Salmo salar (Atlantic salmon): 106561532
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Entry
106561532 CDS
T04363
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
106561532
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sasa03021
]
106561532
03036 Chromosome and associated proteins [BR:
sasa03036
]
106561532
Transcription machinery [BR:
sasa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
106561532
Coactivators
SAGA/TFTC/STAGA complex
106561532
Chromosome and associated proteins [BR:
sasa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
106561532
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
106561532
NCBI-ProteinID:
XP_013981067
UniProt:
A0A1S3KR18
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All DBs
Position
ssa10:102606682..102623477
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AA seq
999 aa
AA seq
DB search
MAGASDPLEDMLFNEVDEKAVSDLVGSLESQLVSQKTSPATYSNIKREGTTGAVSQFSGK
LRDQAGSLEPPQQGHPKAALNAEPIANQAMSNKIISASTSSIATGGVLNAGTNLQTYGAA
SQTISTAPPGSVTLPAQSTSFNRGTVLGPAGTSVVTVPNPNITTTTTTTTIRTASPGSQS
FNGNTGAVKLVNSPAASQVGSGSSTVVSTVSAGNSNIIVSMTSQPPSLPNFTGPQQSAVA
TTPTIALQRQPSPMAIASQNGVIDPKVSAVVTQGAGSLGATTSQVMNHSNTLMHTKMVAP
NQPVSAGQSIILGGSPPPVVVNSPISQAQSVASPTLTTGVKPTVNGVGQPTVTIVRPPGT
PVMATPVPQQRPGLLASTTRTAAPQLAVRPPQKTTIQLPPGFTIPPGMVLVRTDTGQLVM
VTQQVLAQAQAKTQQGQAAVSNISPQPGIPTAGANIRVSTPSQAPGTPQAVRLASPFQAR
MAQSPSSSSPAIQKAITVAPAGASVSVKMTTPQKAQSVITGGQALVKPGAVRPTITLNTA
AASASGTPIATVSQEMQENVKKCKNFLSTLIKLASHNSPSPDTSKNVKTLVQDLLDAKIE
PEEFTTSLQAELKSSPQPYLIPFLKKSLPALRLSLLNNQQSLLASTSASALAVPSTSTIR
PRLPTTISPATGIVRTPTTALGVRRPGVQGVQTRMPMVITQTIRPQGVVTRGPAIIPGRS
PVGIGAQASANQKKLNEPGGGTFRDDDDINDVASMAGVNLNEENARIMATNSELVGTKIR
SCKDEAFLPPGLLHRRIMEAAKRFGVTEVPAETVNYISHATQARLRSMLEKVSTIAQHRT
DGGKDEEWYEPSTDVRAQLRFFEQLERMEKQRKDEQEREVLLKAAKSRARQEDPEQARLK
AKAKEMQQAEQAQIRQREANLTALAAIGPRKKRKMDSPGGSTSGTEVASGSGDGSSTAAS
SRQQLRQRITRVNLRDFIFCLEQERATSRSLLLYKALLK
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagcctccgacccactggaggacatgctcttcaatgaggtagacgaaaaagct
gtaagcgacttagtgggctctttggaatcgcaacttgtcagccaaaagacttcgcccgcc
acatattctaatatcaagcgagaaggaactacgggcgctgttagccagttctcagggaaa
ctgcgtgatcaagcggggtctctggagccgccacaacaaggacacccaaaagcggcgtta
aacgcggaacccatcgcgaatcaggcgatgtccaataagattatcagcgcttctacctct
tccatcgctactgggggtgttttaaacgctggtaccaatctacaaacatatggagccgca
tctcaaaccatttccaccgcaccaccaggatcggtaactttgcctgctcagtcgactagc
ttcaacagagggactgttttgggtcctgctggcacatcggtggtgactgttcccaatcca
aacatcacaacaacaacaacaacaacaactatcaggactgcttcacctggttcacagagt
tttaacggtaacactggagctgtgaagttggtcaactcgccagcagcttctcaagtcggg
tcaggcagcagcactgttgtaagtactgtcagtgcgggcaattccaatatcattgtgtcc
atgacttcacaacctccttctctgccaaactttactggacctcaacaatctgcagtggct
actactcccactattgcattgcaaagacagcccagccccatggccattgcctcacagaat
ggagtaatagaccccaaggtttctgcagtggtcacacagggtgcaggttccctaggggcc
accacctctcaggtcatgaaccacagcaacactctcatgcacactaaaatggtggcaccc
aaccagccagtctctgctggccaatcaataattctcggagggtctccccctcctgttgtt
gttaactcaccaataagccaggcacagagtgtggcgagtcccactctcacaactggggtg
aaaccaactgttaatggagttggtcagcccacagtgaccatcgtgaggccccccggtacg
ccggtgatggctacccccgtaccgcagcagagacctgggctgttagcaagtaccacgagg
actgctgcaccacagctggccgtcagaccaccacaaaagaccaccattcagttaccccct
ggatttaccataccacccggtatggtgctggtgcgtacggacacgggccagctagtgatg
gtgactcagcaggttctagcccaggcccaggctaagacccaacaaggccaggctgctgtc
tccaacatctccccccagcctggaatccccaccgctggggccaacatcagagttagcact
cccagccaggcccctggtacgccccaggctgtccgtctggcgtcccctttccaggcaaga
atggcccagtccccctcttcctctagccctgctatacagaaggccataaccgtggcacct
gcgggtgcgtctgtgtcagtgaaaatgaccacccctcagaaggcccagtctgtgatcaca
gggggccaggccctggtcaagcctggtgctgtacggcccactatcaccctgaacactgca
gcagccagtgcctctggaacccctattgcaacagtctcccaggaaatgcaagagaatgtg
aagaagtgcaagaacttcctgtccaccctgatcaagctggcgtcccacaactccccctcc
cctgacacatctaagaacgtcaagaccctggtgcaggatctactggatgctaaaatcgag
cctgaggaattcaccacgagtctgcaggctgagctgaaatcctctccacagccgtacctc
atccccttcctcaagaaaagcctccctgctctgcggctgtcccttctcaacaaccagcag
tctcttctggcctccacctccgcttctgccctggccgtcccctccacctccaccatcagg
ccccggctccccaccaccatcagccccgccacgggcatcgtcaggacacctaccactgcc
ctgggtgtgagaagaccaggggtccagggggtccagacccgcatgcccatggtcatcact
cagaccatacgaccgcaaggcgtagttacaagaggacccgctattatcccgggcagaagt
cctgtgggcattggtgcccaggcctctgccaatcagaagaagctgaatgagcctggaggt
gggacgttcagagatgacgatgacatcaatgacgtggcgtccatggcgggggtaaacctg
aatgaggaaaacgcccgcatcatggccaccaactctgagctggtgggcaccaagatccgc
tcctgtaaggacgaggccttcctcccaccaggtctgctacacagacgcatcatggaggct
gccaagaggtttggggtgaccgaggtcccagctgagacagtgaactacatctcccatgct
acccaggccaggctgagatccatgctggagaaagtgtccactattgcccagcaccgcacc
gacgggggcaaggatgaggaatggtatgagccgtcgacagacgtcagggcccagctccgc
ttttttgagcagctggaaaggatggagaaacagaggaaggacgaacaggagagagaggtc
ctactcaaggctgccaagagtcgcgccagacaggaggacccagaacaagctcggttgaag
gcgaaagctaaggagatgcagcaggcagagcaggcccagatccgacagcgtgaagccaac
ctcactgccctggctgccatcgggccccgtaagaaacgcaagatggactcgccagggggc
tccacatcgggcacagaggttgcttcgggttcaggggatggctcttccacagctgcctcc
tcccgccaacagctccgtcagcggatcacgcgagtcaacctcagggactttatcttctgc
ctggagcaggagagggccacatccaggtccttattgctttataaggctctcctgaagtag
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