Salmo salar (Atlantic salmon): 106561829
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Entry
106561829 CDS
T04363
Symbol
ighmbp2
Name
(RefSeq) immunoglobulin mu binding protein 2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sasa03009
]
106561829 (ighmbp2)
03012 Translation factors [BR:
sasa03012
]
106561829 (ighmbp2)
Enzymes [BR:
sasa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
106561829 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
106561829 (ighmbp2)
Ribosome biogenesis [BR:
sasa03009
]
Eukaryotic type
Other ribosome biogenesis factors
106561829 (ighmbp2)
Translation factors [BR:
sasa03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
106561829 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
Viral_helicase1
DEAD
UvrD-helicase
nSTAND3
Helicase_RecD
ResIII
AAA_22
AAA_16
SLFN-g3_helicase
IstB_IS21
HEM4
ABC_tran
T2SSE
PhoH
AAA
DnaB_C
ATPase
AAA_25
Zot
NPHP3_N
AAA_31
AAA_18
UvrD_C_2
Flavi_DEAD
ATPase_2
Herpes_ori_bp
SRP54
AAA_33
Motif
Other DBs
NCBI-GeneID:
106561829
NCBI-ProteinID:
XP_013981567
UniProt:
A0A1S3KSE8
LinkDB
All DBs
Position
ssa10:complement(114199836..114231808)
Genome browser
AA seq
1010 aa
AA seq
DB search
MEVECFVSKTLELLQEEREAEIEETKLWQENISLKDLQSKGVCLLKLQIGSQSTGLYGRS
LLLLEPRKHMGVSVLPSNNFGPGDIVGLYDLDGCKPSSQLCTGVVTRISQSAVTVACEDS
PDGLNLDTDALYNLMKLANDVTYKRMKKALNTLNGYSSGPAADLISVLFGYSEPGSISQP
NDLSFLNTGLDESQRQAVSFALSQREVAVIHGPPGTGKTTTVVEIILQAVKQGQKVLCCA
GSNVAVDNLVERLAKAKAKVLRLGHPARLLESIQKHSLDAVLAHSDNTNIIADIRKDIDK
AFMGMKKMNDKRDRIHLKREVGELRKELRTREATAIAEVLKRADVVLATNTGANDGGPLK
NLPVDHFDWVVIDECAQALESSCWIALLRGRKCILAGDYKQLPPTIKSHTAASKGLSVSL
MERLIQKYGDSVVRMLTVQYRMNSNIMTWASEQMYQGQLTAHSSVEKHLLKDLPGVASVE
ETSTPLLLIDTAGCGLSEMEVTDEQSKGNQGEVDIVELHIKALTEAGVKPKDIAVIAPYN
LQVDLLRQRLSARHPDLEIKSVDGFQGREKEAVVLTLVRSNRKGEIGFLAEDRRINVAVT
RARRHLALVCDTQTVQTHGFLKTLIDHMTQHGDVRTAFEYLQDIVPQNYTRDHRDIKSNN
TKATASSSSSISNKQKDRGQAGSKVEPGHKKTSGGNKTQGVEHQTGSGPSTHSQARRSTP
TEEEQRLTQIKYLEIKGQVEWFLQDPDQTALRFPSSLNSHGRLLVHQVAEELGLNHESQG
EGKDRCITVSRPPTGPNEAGEEEEQQALQPAAVLEEDSVTGPPVEQPAAPVDLKTLHMER
MKREQEKREQKRKQEKHLDTVRTAGQTQTAKKAKAKGKTKKTKAGACEIAAAATADVDFD
TLIDAVVKAERVCSFVRCKTLVIHLGQLCLFCNRQYCLGHHIPEVHGCGDLAKANARMRI
SKEGVLYAGSGHKDKSVDPNKKAYLHRKLDSKLKDMEKQRKTKPKESDNN
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atggaggtggaatgctttgtgtccaagaccctagagctccttcaggaggagagagaagca
gagatcgaggagacaaagctatggcaggagaatatctctctgaaagatctccagagtaaa
ggcgtttgtcttctgaagctgcagataggaagccagtcgactggcctttatggacgatca
ctcctccttctagaacccagaaaacacatgggcgtctctgtgctgcctagcaacaacttt
ggacccggagacatagtgggtctgtatgacctggatggctgtaagccgtcctcccagctg
tgtactggtgtcgtgacccgcatcagtcagtcggctgtaaccgtggcctgtgaggactcg
ccagacgggctcaacctggacacggacgctttgtacaacctcatgaagctggctaacgat
gtcacatacaaacgcatgaaaaaggccttgaacactctgaatgggtacagcagtggacca
gctgccgatttgatcagcgttctctttggctattcagaacctggctctatatcacaacca
aatgatctgtctttcctgaacactggtctggatgagtctcagagacaggcggtgtcgttt
gctctgtctcaaagagaggtagctgtaatacacggaccgccaggcaccggcaagacaacc
actgtggtggaaatcatcctgcaagcggtcaaacagggacagaaggtcctgtgctgtgct
ggttctaacgtggcggtggataacctggtagagcgcctggctaaggccaaagctaaggtc
ctgagactgggccaccctgcccgcctgctagagtccattcagaaacactcgctagacgcc
gtcctcgctcacagtgacaacaccaacatcatcgctgacatacgcaaagacattgacaaa
gcttttatggggatgaagaagatgaatgacaaacgagatcggatccacctgaagagggag
gtaggagagctgaggaaagagctgaggaccagggaagctacagccattgctgaggtcctc
aaacgtgctgatgttgttcttgctactaacacaggtgctaatgatggtggccctctgaag
aacctacccgtggaccattttgactgggtggtgatcgatgagtgtgcccaggcgctggag
agctcttgctggatcgctctgctcagaggcaggaagtgtatcctggctggagactacaag
cagctgccacccaccatcaagtctcacacggctgcatctaaaggcctgtctgtcagcttg
atggagagattgatccagaagtatggagactccgtagtcaggatgctgaccgtacagtac
cgtatgaacagtaacatcatgacctgggcctcagaacagatgtaccagggccaactcacc
gcacacagctcagtggagaaacatctgctcaaagatctcccaggagtagccagtgttgaa
gagaccagcactcctctcctcctcatagacacagcaggctgtggacttagtgagatggag
gtgacagacgaacagtccaaaggaaaccaaggtgaggtcgacattgtggaactacacatc
aaagcgttgactgaagctggggtgaaaccgaaagacatcgctgtcattgccccttacaat
ctgcaggtggatctcctgcgtcagcgtctctcagcgagacatcctgatctggagatcaag
tctgtagacggctttcagggcagagagaaggaggctgtggttctgaccttggtcagatct
aacaggaaaggtgaaatagggttcttagctgaagacaggaggatcaacgtggcggtgact
cgagccagacgtcacctggccctggtgtgtgacacgcagaccgtccagacccacggcttc
ctcaagaccctcatcgatcacatgacccagcacggagacgttcgcaccgcctttgagtac
ctgcaggacattgtgccccagaactacaccagagaccacagagatattaagtctaacaac
actaaagctaccgctagcagctcttcatccatctccaacaagcagaaggacagaggccag
gctgggagcaaggtggagccaggacacaagaagacctctggggggaacaagacccaggga
gtagagcaccagacaggttcaggtcccagcacacacagccaagccagacgttccaccccg
acagaagaggaacagagactgacccagataaaataccttgagatcaagggccaggtggag
tggttcctacaggacccagaccagacggcgctacgctttccctcgtccctcaactcccac
ggccgcctgcttgtacaccaggttgcagaggaactgggcctgaaccatgagagccaggga
gaaggaaaggaccgatgcatcactgtctccagacccccaacagggcctaacgaggctggg
gaagaagaggagcaacaagccctgcaaccagcagccgtcctggaggaagacagtgttaca
gggcctcctgtagagcaaccggcagcacctgtagatctcaagactttacatatggaacga
atgaaacgggagcaggagaagagggagcagaagaggaagcaggagaagcatctagatact
gtccgtacagcaggacagactcagactgctaagaaggccaaggcaaaaggaaagaccaaa
aagaccaaagcgggtgcctgtgagatcgctgcggctgcgacagctgacgttgattttgac
accctaatagatgctgtggtgaaggcagaacgcgtctgtagtttcgtcaggtgtaaaacc
ttagtaattcacctgggacaactctgtctgttctgcaacagacaatactgcctcggtcac
cacatacctgaggtccatgggtgtggagacctagccaaggccaatgccaggatgaggatc
agtaaagaaggggttctgtatgctggtagtggacacaaggacaagtctgtagatcctaac
aagaaggcctatctacacaggaagctggactccaaactcaaagacatggaaaagcagcgg
aagaccaaacccaaagagagtgacaacaattga
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