Salmo salar (Atlantic salmon): 106561926
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Entry
106561926 CDS
T04363
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1-like
KO
K10610
DNA damage-binding protein 1
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03420
Nucleotide excision repair
sasa04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
106561926 (DDB1)
09124 Replication and repair
03420 Nucleotide excision repair
106561926 (DDB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sasa04121
]
106561926 (DDB1)
03400 DNA repair and recombination proteins [BR:
sasa03400
]
106561926 (DDB1)
Ubiquitin system [BR:
sasa04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
106561926 (DDB1)
DNA repair and recombination proteins [BR:
sasa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
106561926 (DDB1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
106561926 (DDB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Beta_propel
Motif
Other DBs
NCBI-GeneID:
106561926
NCBI-ProteinID:
XP_013981804
UniProt:
C0H9K5
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All DBs
Position
ssa11:complement(8364934..8396930)
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AA seq
1139 aa
AA seq
DB search
MSYNYVVTAQKPTAVNACITGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQNGESIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRENRELKAFNIRLEELQVIDVHFLYGCQAPTVCF
IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGAVVLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNDSGSYVAVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSEAGRE
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNLQTFYCGNVAHQQLIQITSGGVRLVM
QDSKALVSEWKEPQGRNISVAACNSSQVVLAVGRALYYLQILSGELKQISTVEMEHEVAC
LDITPLGEDGDSPLCAVGLWTDISARVLKLPCFTALHKEMLGGEIIPRSILMTTFEASYY
LLCALGDGALFYFGLDLTSGVLSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIYS
SNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESP
RRICYQEVSQCFGVLSSRVEMQDASGTTAAVRPSASTQALSSSVSSSKLFPSSTSPHETS
FGEEVEVHSLLVVDQHTFEVLHAHQFLQSEYALSMVSCRLGRDLSVYFIVGTAMVYPEEA
EPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMMEFNGKLLASINSTVRLYEWTAEKELRT
ECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILD
DDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGVFHLGEFVNVFSHGSLVLQNLGESS
TPTQGSVLFGTVNGMIGLVTSLSEGWYSLLLDLQNRLNKVIKSVGKIEHSFWRSFHTERK
TEQATGFIDGDLIESFLDLGRAKMQEVVSTLQIDDGSGMKREATVDEVIKIVEELTRIH
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtataattacgtggtaacagcgcagaaaccgacggcagtcaatgcctgcatcacc
ggccacttcacctctgccgaggacctgaatctgctcatagctaaaaacacacgcctggag
atctatgtggtcacagcggaagggctccggcctgtcaaagaggtgggcatgtacggcaag
atcgccgtcatggagctcttcaggccaaagggcgaaagcaaggacctgctgttcattctc
actgccaaatacaacgcctgcatcctggagtacaaacagaatggggagagcatcgacatc
atcacccgtgcccacggcaacgtgcaggaccgcatcgggcgtccctcggagacgggcatc
atcggcattgtagaccctgagtgccgcatgatcggcctgcggctgtacgacggcctattc
aaggtgatcccgttggaccgggagaaccgagaactcaaggccttcaacatccgcctggag
gagctgcaggtcatcgacgtccacttcctgtacggctgtcaggcgcccacagtctgcttc
atctatcaggaccctcagggacggcatgtgaagacctacgaggtgtcgctgagggagaag
gagttcaacaaggggccgtggaaacaggagaatgtggaggctgaggcttctatggtcatc
ccagtcccagaaccatttgggggggctataatcattggacaagaatccatcacctaccac
aacggggataaatacttggccatcgcacctcccaccatcaagcaaagcaccattgtctgt
cacaaccgggtggatcccaacggctcgcgctacctgctgggggacatggagggccgtctg
tttatgctgctgctggagaaggaggagctgatggacggggccgtggtgctcaaggacctc
cgcgtcgagctgcttggagagacgtccattgcagagtgcttgacctacctggacaacggt
gtggtgtttgtgggttccagactgggcgactcccagttggtcaagctcaatgtggacagt
aacgactcggggtcgtacgtggcggtgatggaaaccttcaccaacctggggcccatcgtg
gacatgtgtgtagtggacctggagagacagggacagggccagctggtcacctgctctgga
gcattcaaggagggctccctcaggatcatccggaatggtatcggaatccacgagcacgcc
agcattgacctgccagggatcaaaggtttgtggccccttcgctcagaggctgggagggag
acagacgatatgctggtcctgtctttcgtgggccagacaagggtgctgatgctaagcggg
gaggaagtggaggagactgagctgcctggctttgtggacaacctgcagaccttctactgt
ggcaacgtggcccaccagcagctcatccagatcacgtcgggcggtgtgcgtctggtaatg
caggacagcaaggccctggtgtctgagtggaaggagccgcagggccggaacatcagcgtg
gccgcatgtaactcctcccaggtggtgctggccgtgggccgagccctctactatctccag
atcctctctggggaactcaaacagatcagcacggtggagatggagcatgaggtggcctgc
ctagacatcacgcccctgggggaggacggagattcgcccctctgcgccgtgggcctgtgg
acggacatatcggcccgggtcctcaagctgccctgcttcaccgccctgcacaaagagatg
ctcggaggagaaattatccctcgctccatcctgatgacgacattcgaggccagctactac
ctgctgtgtgccctgggagacggagcgctcttctacttcggcctggacctgacctcaggc
gtgctgagcgagcgtaagaaggtgactttgggcacccagcccacggtgctgaggaccttc
cgctccctgtccacctccaacgtgtttgcctgctccgaccggcccaccgtcatctactcc
tccaaccacaagctggtcttctccaatgtcaacctcaaggaggtcaactacatgtgtccg
ctcaactccgagggctaccccgacagtctggctctggccaacaacagcactctcaccatc
gggaccatcgacgagatccagaagctccacattcgcacggttcccctctacgagtctccc
aggaggatctgttaccaggaagtatctcagtgttttggggtgctatccagccgcgtggag
atgcaggacgccagcgggaccacggcagcagtgcgccccagcgctagcactcaggctctg
tctagcagtgtgagctccagtaagctgttccccagcagcacctccccacatgagacctcc
ttcggggaggaggtggaggtgcacagcctcctggtggtcgaccaacacaccttcgaagtg
ctccacgcccaccagttcctccagagtgagtacgcccttagcatggtgtcctgccgtctg
ggcagggacctctcggtctactttatcgttggcacggcaatggtctacccagaggaggcg
gagcccaagcaaggccgcatcatcgtcttccactacactgatggtaagctgcagacggtt
gcagagaaggaggtgaagggagccgtctactccatgatggagttcaatggcaaactgctg
gccagcatcaacagcacagtgcgtctgtacgagtggaccgctgagaaggagctgaggaca
gagtgtaaccactacaacaacatcatggctctctacctaaagaccaaaggagacttcatc
ctggtgggagacctgatgaggtctgtgctgctgctggcctataaacccatggagggcaac
tttgaggagatcgcccgtgacttcaatcccaactggatgagtgctgtggagatcctggac
gatgacaacttcctgggggcggagaatgccttcaacctctttgtgtgtcaaaaagacagc
gcggccacgacagacgaggagcgacaacatctgcaggaggtgggtgtgttccacctgggg
gagtttgtcaatgtcttctcccatgggtcactggtgctgcagaacctgggcgagagctcc
acccccacgcagggctccgtgctcttcggcaccgtcaacggcatgatcggtcttgtgacc
tctctgtccgagggctggtacagcctgctgctggacctgcagaaccgactcaacaaggtc
atcaagagcgtgggcaagatcgagcacagcttctggaggtccttccatacggagcgtaag
actgagcaggccacgggcttcatcgacggggacctcatcgagagcttcctggacctgggc
cgcgccaagatgcaggaggtggtcagcacgctacagattgatgacggcagcggcatgaag
cgcgaggccaccgtggacgaggtcataaagattgtggaggagctgacaaggatccactag
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