Salmo salar (Atlantic salmon): 106561998
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Entry
106561998 CDS
T04363
Name
(RefSeq) thrombospondin-4-B-like
KO
K04659
thrombospondin 2/3/4/5
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04145
Phagosome
sasa04510
Focal adhesion
sasa04512
ECM-receptor interaction
sasa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106561998
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
106561998
09144 Cellular community - eukaryotes
04510 Focal adhesion
106561998
09142 Cell motility
04820 Cytoskeleton in muscle cells
106561998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sasa04131
]
106561998
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sasa04147
]
106561998
00536 Glycosaminoglycan binding proteins [BR:
sasa00536
]
106561998
Membrane trafficking [BR:
sasa04131
]
Endocytosis
Phagocytosis
Opsonins
106561998
Exosome [BR:
sasa04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
106561998
Exosomal proteins of colorectal cancer cells
106561998
Exosomal proteins of bladder cancer cells
106561998
Glycosaminoglycan binding proteins [BR:
sasa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106561998
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_3
EGF_CA
EGF
EGF_MSP1_1
cEGF
DUF7630
KASH_CCD
Motif
Other DBs
NCBI-GeneID:
106561998
NCBI-ProteinID:
XP_013981988
UniProt:
A0A1S3KTG9
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All DBs
Position
ssa01:complement(113433596..113452579)
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AA seq
939 aa
AA seq
DB search
MGLWTMLIVASQLILNLCSDVGAQGSVYDLLNTPDCLPDLLQGGLVEQGVNEAFILTTFK
LQPKTGTTVFGLYNPRDNSKYFEFTVLGKLNRAVLRYLRSDRRMSSVTFNNIQLADGQRH
RLLFHLKGMLQGPRAVELHLDCRLVETVRDLPSVFQGLPAGYGVVELKSMQGKAEEELEE
LKLVVGDTFENVASLQNCHQQGDSVQTLGVNTKQLSNQMLELTQVINELKDVLIQQVKET
SFLRNTISECQACGLDGSEVMKPKCAPGVCFRDDMCIETEESVECGPCPDGYTGDGFSCN
DVDECQFNPCFAKVKCVNTAPGFRCDACPLGYTGLAVEGVGVVYAQTNKQVCDDIDECKG
PNNGGCTADSLCHNSAGSYVCGGCKTGYIGGQVKGCKPERSCGNSRTNPCDVNAQCIQER
DGSITCQCGIGWAGNGYLCGKDTDIDGYPDEKLKCKDMVCKKDNCMRVPNSGQEDADEDG
QGDACDNDADGDGILNEQDNCWLKPNVDQRNSDKDNHGDACDNCRMVENPDQRDTDSDRK
GDACDDDMDGDGLKNFLDNCQRVVNRDQLDRDGDGVGDACDSCPDIPNPNQSDIDDDLVG
DSCDTNQDSDGDGHQDTKDNCPNVINSSQLDTDKDGLGDECDDDDDNDSIPDFLPPGPDN
CRLVPNPDQLDENNDGVGDVCESDFDQDKVIDRIDNCPENAEVTLTDFRAYQTVVLDPEG
DAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFSGVDFEGTFHVNTVTDDDYAGFIFGY
QDSSSFYVVMWKQTEQTYWQATPFRAVAEPGIQLKAVKSKSGPGEHLRNSLWHTGDTNDQ
VRLLWKDPRNVGWKDKVSYRWYLQHRPQVGYIRARFYEGTELVADSGVTIDTTMRGGRLG
VFCFSQENIIWSNLKYRCNDTIPEDFQAFSTQHGVNDRL
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atggggctgtggacgatgctgatcgtggcttcgcagctgatcttaaacctgtgctcagac
gtgggagcccagggctcagtctatgatctcctaaacaccccggactgtctgccagacctg
ctgcagggcggcctggtggagcagggagtgaatgaggcattcatcctcaccacctttaaa
ctgcagcccaagactggcaccactgtgttcggtctgtacaacccccgggacaacagcaag
tactttgagttcaccgtgctggggaaactcaacagagctgtgctgcgttacctgaggagt
gatcggaggatgagctctgtgaccttcaacaacatccaactggcggacggtcagcgccac
cgcctcctcttccacctgaaggggatgctgcagggacccagggcggtggagctacacctg
gactgcagactggtggagacggtcagggacctcccctccgtgtttcagggcctgcctgca
ggctacggcgtggtggagctgaagagcatgcagggcaaagcagaggaggagctggaggaa
ttgaaactggtggtgggagacacgttcgagaacgtagcctctctacaaaactgccaccaa
caaggagactcagtgcagactctgggggtcaacacaaagcagctctccaatcaaatgctt
gagctcacccaggtgataaatgagctgaaagatgtccttattcagcaggtcaaagagaca
tcttttctcagaaacaccatctctgagtgccaggcttgtggactggatggaagtgaggtc
atgaagccaaagtgtgcccctggtgtttgtttccgtgacgacatgtgtattgagacggag
gagagtgttgagtgtggaccctgtcctgatggatacacaggggatggcttcagctgtaat
gatgtggatgagtgtcagtttaacccttgcttcgccaaggtaaagtgtgtgaacacagct
ccagggtttcgctgtgacgcatgtcctctgggctacactggtctggctgtggagggggtg
ggagtggtctacgcacagacaaacaaacaggtctgtgacgacattgacgagtgcaaagga
cccaacaacggagggtgcactgctgactctctctgtcacaactctgcgggttcatacgtc
tgtgggggctgtaaaacaggctacatagggggccaggtgaagggctgtaagccagagagg
agctgtggtaacagtcggaccaacccctgtgatgtcaacgcccagtgtatccaagaaaga
gacggctccatcacctgtcagtgtgggattggctgggctggtaatggctacctatgtggg
aaggacacagacattgatggataccctgatgagaaactcaagtgcaaggatatggtctgt
aaaaaggataactgcatgcgtgttcccaactctggccaagaagatgctgacgaggacgga
caaggggacgcttgtgacaatgacgctgatggagacggtattctgaatgaacaggataac
tgctggctgaagcctaacgtggaccagaggaacagtgacaaggacaaccatggtgacgcc
tgtgacaactgtcgtatggtggagaaccccgatcagagggacactgacagtgacaggaaa
ggagacgcctgcgatgatgacatggatggagatggcttgaagaacttcctggataactgc
cagcgggtggtgaaccgggaccagttggaccgggatggagacggagtgggagatgcctgt
gacagctgccccgatattcctaatcctaaccagtccgacatcgatgatgacctggttggg
gattcttgtgacacaaaccaagacagtgatggtgacggtcaccaggacaccaaggacaac
tgtcccaacgtgatcaacagctcccagctggacacagacaaagacggcctgggggatgag
tgtgacgatgatgatgacaacgacagcatccctgacttcctgccaccaggacccgacaac
tgcagactggtgcccaaccccgaccagctggatgagaacaatgacggtgttggggatgtg
tgtgagtcagactttgaccaggacaaggtgattgacagaatagacaactgtccagagaac
gctgaggtcactctgacagacttcagagcctatcagacggtggtgctggaccccgagggt
gacgcccagattgaccctaactgggttgtcctcaatcagggaatggagattgtgcagacc
atgaacagtgaccccggactggctgtgggttacaccgcgttcagtggggtggactttgag
gggacgttccatgtaaacacagtgactgacgatgactacgcaggcttcatctttggctac
caggactcctcctccttctacgtggtcatgtggaaacagacagagcagacctactggcag
gccacacccttcagagctgtggccgagcctggcatccagctcaaggctgtgaagtctaag
tcgggtccaggtgagcacctgaggaactccctttggcacacaggtgacaccaacgaccag
gtgcgtctgttgtggaaggaccccaggaacgtgggctggaaggacaaggtttcctaccgc
tggtacctgcagcaccggccccaggttggatacatcagggcccgtttctatgagggtaca
gaactggtggctgactctggtgtgaccattgacaccaccatgagaggagggcgactgggc
gtattttgtttctctcaggaaaacatcatctggtccaacctaaagtaccgctgcaatgac
accatccctgaggacttccaggcgttcagcacgcagcacggtgtcaacgacaggctctaa
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