Salmo salar (Atlantic salmon): 106562002
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Entry
106562002 CDS
T04363
Symbol
vps35
Name
(RefSeq) VPS35, retromer complex component
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
106562002 (vps35)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sasa04131
]
106562002 (vps35)
Membrane trafficking [BR:
sasa04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
106562002 (vps35)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
FerA
Motif
Other DBs
NCBI-GeneID:
106562002
NCBI-ProteinID:
XP_013981990
UniProt:
A0A1S3KTR4
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Position
ssa11:12176321..12190854
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AA seq
798 aa
AA seq
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MPTTQQSPQDEQEKLLDEAVQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSP
KSYYELYMAISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVR
SFPQSRKDILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDDGEQLEGEDAMTGDIND
SIDFVLLNFAEMNKLWVRMQHQGHSRDREKREKERQELRILVGTNLVRLSQLEGVNVEKY
KQIVLSGVLEQVVNCRDSLAQEYLMECIIQVFPDEFHLQTLNLFLRSCADLHQHVNVKNI
IIALIDRLALFAHREDGPGIPAEIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLA
MKCYPDRVDYVDKVLESTVEIFNKLNLEHIATSSAVSKELTRLLKIPVDTYNNILTVLQL
KHFPPLFEYFDYESRKSMSCYVLSNTVDYNTTIIAQEQVDAILTLVSTLIQDQPDQPAED
PDPEDFAEEQSLVGRFIHLLLSDDPDQQYLILNTARKHFGAGGNQRIRYTLPPLVFAAYQ
LAFRYKENSSSDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFEN
HETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERTKCFSEENHEPLRTQCALAAS
KLLKKPDQCRAVSICAHLFWSGRNTEKNGEEIRDGKRVMECLKKALKIANQCMDPSLQVQ
LFIEILNRYVCFYERENDAVTVQVLNQLIQKIREDLPNLEASEETEQINKHFHNTLEHLR
LQRESPEAEGPAYEGLVL
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atgcctaccacacagcagtcaccccaggacgagcaggaaaagctacttgatgaagccgtg
caggctgtcaaggtccagtcatttcagatgaaacgttgcctggacaagaacaagctgatg
gatgcattgaaacatgcatctaacatgctgggggaactcaggacctccatgttatcgcca
aagagctactatgaactctacatggccatctcggacgagctccactacctggaggtgtac
ctgacagatgagtttgccaagggcaggaaagtggctgacctctatgagctggttcaatat
gcagggaacatcatccccagactttacctgctgatcactgtgggggtggtgtatgttcgc
tccttccctcagtcgcgtaaggacatcttgaaggacctggtggagatgtgtcgtggggtg
cagcacccgctgagaggcctgttcctcagaaactacctgctacagtgcacccgcaacatc
ctgcctgatgacggggagcagctagaaggggaggatgcgatgacgggagacattaacgac
tccattgactttgtgctgctgaattttgctgagatgaataagctgtgggtgcgcatgcag
caccagggccacagccgagacagggagaagagggagaaggagaggcaggagctgcgcatc
ctggtcgggaccaacctggttcgactcagccagctggagggggtcaatgtggaaaagtat
aaacagattgtgctgtccggtgtcctagagcaggtggtaaactgccgagattccctggct
caagaatatctcatggagtgcatcattcaggtttttcctgatgagttccaccttcagaca
ctgaacctattccttcgttcctgtgccgacctgcatcagcacgtcaatgtcaaaaacatc
atcattgctctcattgacagactggctttgtttgctcaccgagaagatggacctggaatc
cctgctgaaatcaaactgtttgatattttctcccaacaagtagccacagttatacagtcc
cgccaggacatgccttcggaggatgtggtctcactacaggtgtccctcatcaacctggcc
atgaagtgctaccctgaccgggtggactatgtggacaaggtgttggagagcacagtggag
atcttcaacaagctcaacctggagcacattgcaaccagtagcgcggtctcgaaagagttg
actaggctgctgaagatcccagtggacacctacaacaacattctgactgttctgcagctc
aagcacttccctccgctcttcgagtactttgattatgagtcccgcaaaagcatgagctgt
tacgttctgagcaacactgtggactacaacaccaccattatagcccaggagcaggtggat
gccatcttgaccctggtgtcgacactgatccaggaccagccagaccagcccgctgaagac
ccagacccagaggactttgctgaggagcagagccttgtgggtcgctttatccatctgctg
ctttccgacgaccccgaccaacagtatctgatcctgaatacagccaggaagcactttggt
gctggggggaaccagaggattcgctacactcttccaccgctggtgtttgctgcctatcag
ctggctttccgctacaaagagaactcttcatcagatgataaatgggagaagaagtgccag
aagatcttttcgtttgcccaccaaaccatcagtgctctgatcaaggctgagctggctgag
ctgcctctcagactcttcctacagggggcgctggccgcaggagagattggcttcgagaac
cacgagactgtggcctacgagttcatgtcacaggccttctccctgtatgaggatgagatc
agcgactccaaggctcagctagcagccatcacgctgatcatcggcacgtttgagagaacg
aaatgcttcagcgaggagaaccacgagcctctgaggacgcagtgtgcgctcgccgcctcc
aaactgctcaagaagccagaccagtgtcgggccgtcagcatctgtgcacacctcttctgg
tccggacgcaacactgaaaagaatggagaggagattcgtgacgggaagagggtgatggag
tgcttaaagaaggccctgaaaatcgccaaccagtgcatggacccgtcactgcaagtgcag
ctcttcattgagatcctgaacagatacgtctgtttctacgaaagagagaatgatgcggtg
acggtccaggttctgaaccagctgatccagaagatccgagaggacctgccaaacctggag
gccagcgaggagacggagcagatcaacaaacacttccacaacacactggagcacctgcgt
ctgcagagagagtcgccggaggccgaggggcctgcttatgagggcctggtgctgtag
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