Salmo salar (Atlantic salmon): 106562390
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Entry
106562390 CDS
T04363
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
106562390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sasa03021
]
106562390
03036 Chromosome and associated proteins [BR:
sasa03036
]
106562390
Transcription machinery [BR:
sasa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
106562390
Coactivators
SAGA/TFTC/STAGA complex
106562390
Chromosome and associated proteins [BR:
sasa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
106562390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
106562390
NCBI-ProteinID:
XP_013982729
LinkDB
All DBs
Position
ssa11:complement(<26842151..26905492)
Genome browser
AA seq
1071 aa
AA seq
DB search
MAGTPDPLEDMLFSEVDEKAVSDLVGSLESQLVGRSNPADTQSENRGAGSTVTANHHLGK
TLPAQVGNVTTLVQQQQQQQGQHKAGMHQEMNSNEISSEKTVTSSSLSSIPSFEEASTTL
GTGVNATKSGLRSHGTSSITTLPASGGVATSPLVNSIISSTTSRGSALASGQTSTDSVDH
PRKRITASLRSASAGIQSLNGTGGAVTSRNNPPAAGTDALINNVSTVSSSVSAGNSCRTV
DVTSCVNTTNFTLYSSSISSTQSAIPLDKGTPTIALQRLPSHIVASIAQNGNGTTVSALV
KQGAIGPITSAAVSQVNHKKEGSEAKSDAPVQSKIVMSSPLGVVNSVINSVSSPSAVFNL
AATSTASLVMAKPAVNVVGQTVTTTVGMVRPTSPSVATATQPLFQPGVQAAQRIVAPQLI
VRPPQQQQTTIQLPPGFTIPPGMVLVRTEMGQLVMVPQQALAQAQALAQSQAQNNISPRT
ATPTTGATFRATTPQSPVTSQAIRPCPPPVQAKMVPSPSPTPSPVLQVSSSPAPPSKGPM
APAVAVTAPQQAPMVMAPQAPVVMAPQAQVQAGAQASSQPALPPQTSAPAAPGASVISQE
MQENVKKCKNFLATLIKLASHNSPSPETSKNVKSLVQDLLDAKIEPEEFTNRLQSELKSS
PQPYLVPFLKKSLPALRLSLLNIQHSLIQPLPQATPTTGTSPAVRGRLPNSVSTTGASVG
AQGHTAALGIKQAGTAGCQVRMPMVITPLRTQGTVSKGATFQAGKSPVGFAVKGSGNQKN
KLNDPGGGSFRDDDDINDVASMAGVNLNEESARILATNSELVGTHIRSCKDEAFLHPGLL
HRRILETAKKFGVSEVPMEAVNFISHATQSRLRTVLEKVSSIAQHRMDGGKDEEWYEQSA
DVRSQLKFFEQLERIEKQRKDEQEREILLKAAKSRSRQEDPEQARLKQKAKEVSVLLEII
TLDIFPRLQHINFSCLATYVMPFKGVSPLRAVAVTGVDRRRTWVWGRGADALCAAMTPGS
HVHPAPAPCSRKASSQQRSPPSPQPFSLSAPSPQVRHRSPPSPQPFSLSAP
NT seq
3215 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcacccccgacccactggaagatatgctattttccgaggtggatgaaaaagct
gtgagcgatttagtgggctctttggagtcacaacttgttggacgaagcaaccctgcagat
actcagtcggaaaacagaggtgctgggtctacagtcactgcaaaccatcacttagggaaa
acgctaccagcccaagtgggtaacgttactacactagtacagcagcaacaacaacaacaa
ggacaacataaagctgggatgcaccaggagatgaactctaacgaaattagctcagagaaa
actgttacatcttcttcgctgagttctattccgtcctttgaagaagcttccaccacttta
gggaccggggtaaacgctaccaagagcggtttgcgatcgcatggaacatcatctatcaca
acactacctgcatctggtggtgtagcaacttctccgcttgtcaacagcatcatcagcagc
accaccagccgaggttccgctctggcttcaggtcagacatcaacagacagtgtcgatcat
ccaagaaaacgcataactgcatcgttacggagtgcatccgcgggaatacagagtttgaac
ggtaccggaggagcggtaacgtcaaggaataatccccctgccgcgggaactgatgcgttg
attaataacgttagcactgtgtctagcagtgtaagtgcaggaaactcatgtcggaccgtt
gacgttacatcttgtgtgaatacgacgaatttcactttatatagctccagcatttcttca
actcaatcagcgattcccctggataaggggactcctactattgctttgcaaagactacca
agtcacattgtagcgagcatcgcgcagaatggaaatggtactaccgtctcggccttggtt
aaacaaggcgcgataggaccgatcacctctgcagcagtttcgcaagtgaaccacaaaaaa
gagggttctgaagcgaagtcggacgctcccgtgcagtccaaaatagtcatgtccagtccg
ttaggtgttgtcaattccgtaataaactctgtttcctctccctctgctgttttcaactta
gcagcgacttctactgcaagtcttgtcatggcaaagcctgctgtcaatgttgttggacaa
actgtcactacaacggttggaatggtaaggccaacgtcaccgtctgtggccacagctaca
cagcctctgtttcaaccgggagtccaagcagctcaaaggattgttgccccccagctgatt
gtcagacccccccaacaacaacagacgaccattcaactgccaccagggtttaccatccca
ccgggaatggtgttggtgcgcactgagatgggtcagctggtgatggtcccacagcaggcc
cttgcccaggcacaggcccttgcccagtcccaggcccagaacaacatctccccccgaact
gccacccccactacaggggccaccttcagagcaactaccccacagtctcctgtgacctct
caggctattcggccatgtcctccacctgtccaggccaagatggtgccgtctccctctccc
actccaagtcctgtcctccaggtctcctcctcccctgcgccaccttctaagggccccatg
gcgccggctgtggcagtgacggctccccaacaggcccccatggtgatggccccccaggcc
cccgtggtgatggccccccaggcccaggtccaggctggggcccaggcctcctcgcagcca
gccctgcccccacagaccagcgcccctgcagccccaggagcctctgtcatctcccaggag
atgcaggagaatgtgaagaagtgtaagaacttcttggccaccctgataaagctggcttcc
cacaactctccgtcacctgagacctccaaaaatgtcaagtcactggtccaggatctactg
gatgctaagattgagcccgaggagttcaccaacagactgcagtcagagctcaagtcgtct
cctcagccctacctggtccccttcctcaagaaaagcctcccagccctgcggctgtctctg
ctcaacattcagcattccctgatccagcctctgccgcaggccacccccaccacaggcacc
agccctgctgtccgcggccgcctccccaacagcgtcagcaccacgggggccagtgtcggg
gcccagggacacacagctgccctgggtatcaagcaagcgggcaccgctggttgccaggtc
aggatgcccatggtgatcacaccattaagaacacaaggcactgtcagcaagggagccacg
ttccaagcaggcaaaagtcctgtgggttttgccgttaagggctctggaaatcagaaaaac
aagctgaacgatcccggaggcggttctttcagggatgatgatgacattaacgatgtggcg
tccatggcgggggtgaacctgaatgaagagagcgcccgtatcctggccaccaactctgag
ctggtgggaacacacatccgctcctgtaaagatgaggctttccttcacccgggcctgtta
cacagacgcatcctagagacagctaagaagtttggcgtgtcagaggttcctatggaagcg
gtgaacttcatctcccacgctacccagtcccgactccgcactgtgctggagaaggtctcc
tccatcgcacagcacaggatggacggcggtaaggatgaggagtggtatgagcagtcggca
gacgtgcggtcgcagctaaagttctttgagcagctggagaggatagagaagcagaggaag
gatgaacaggagagagagatcctactcaaagcagctaaaagtcgctccaggcaagaggac
ccagagcaggctcggctgaaacaaaaagctaaggaggtaagcgttctgctggagatcatt
acccttgacattttcccaagacttcaacatataaatttttcatgccttgctacatatgta
atgccatttaaaggcgtttctcccctccgtgctgtggctgtgactggagttgataggaga
cgcacatgggtgtgggggagaggagctgatgccctctgtgctgccatgaccccaggctct
cacgtccaccctgccccagccccatgtagcagaaaggccagctcccagcaacgctcccct
ccctcccctcagcccttctccctctcagcccccagcccccaggtcagacaccgctcccct
ccctcccctcagcccttctccctctcagcccccag
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