Salmo salar (Atlantic salmon): 106562546 Help Entry 106562546         CDS       T04363                                  Name (RefSeq) dmX-like protein 2   KO K24155   rabconnectin-3a Organism sasa  Salmo salar (Atlantic salmon) Pathway sasa04142   Lysosome Brite KEGG Orthology (KO) [BR:sasa00001]  09140 Cellular Processes   09141 Transport and catabolism    04142 Lysosome     106562546  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:sasa04131]     106562546 Membrane trafficking [BR:sasa04131]  Exocytosis   Small GTPases and associated proteins    Rab associated proteins     106562546  Endosome - Lysosome transport   Acidification regulators    Rabconnectin-3 complex     106562546    RAVE complex     106562546 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Rav1p_C WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_WDHD1_1st Beta-prop_EML_2 WDR55 Beta-prop_IFT140_1st EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_EML ANAPC4_WD40 Beta-prop_HPS5 WD40_MABP1-WDR62_2nd Beta-prop_DCAF12 Beta-prop_DCAF4 Beta-prop_LRRK2 Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_Vps41 WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_SPT8 Motif Other DBs NCBI-GeneID:  106562546 NCBI-ProteinID:  XP_013982963 UniProt:  A0A1S3KWA0 LinkDB All DBs Position ssa11:34087734..34190603 Genome browser AA seq 3025 aa AA seqDB search MHLHQVLTGAVNPGDCCYSVGSVNDIPFTAYGSGCDIVILASDFECVQIIPGAQNGNIQV GCVECSHQLGRIAASYGNTVCIFEPFATNPNKRHKQLNYQWQKTGQFFLNAITYNLAWDP QGKRILAATERLQLWAPPSAHTLIEEEDGPMTDDKPHPALNDWKCVWQCMTAMSVHITKW SPDGEYFATAGKDDCLLKVWYPTTGWRSSVVLPDLPDKKGPQVHFSFIYLAHPRSVTGLS WRKTSKYMPKGSVCNVLLTSCEDGVCRLWSETVLPEDSILGGQITDNTYSSSLPGLGGKD KIQHALESMSHLKHLRRGRRRSSALVSHTELLPSQMGTHETHTHRHISHHANALCHFHIS ASINPATDIPAVLAESAVFTPEDGSGGGGFVVHWLNNKDLSFTTSMDLFMLQLRKLSEQQ LDQATDDALDQNGSPIKFDFDLDEMSEKGSSEHGEEGEGGEGSTKASSPGSSSSVPLPSM LLERKMEALTLEWNKSPDMLFTIHPTDGSFLVWHVKYLDEYIQGIFRQVQVSFSSRIPVA FPTGDANSLSKNILMYACSFSNVDISNAGEEQGGRARRLPRSASAGLGSSALSLSLGQAP GIGPAVMMVSKHVDGSLNQWAVTFAERSAFSNVLTVSHTFRYCGHRFHLNDQACHTVLPL LLTSSHHNALLTPPSAPGSIDLDQPPTHTPPPRGRRRKQLRNAATRTFHDPNAIYSELIL WRVDHIGPLSCTGGVSELARINSLHTSAFSNVAWLPTLVPSSVLGTYCNSSSACFVASDG NNLRLYQAVVDARKLLDELSDPETSKLVGEVFNIVSQQSTARPGCIIELDVITNQCGSTT QLLHVFQEDFILGYKPQEDPELYTTSYPSTEEYHPTPFSEKFFLVVIEKDLNMNSVLQMW HLHLQSVQACVDDPVPERSYQSQLTIPFQQSTADTSSSPLPRSASTANLQSASKLILSSK LVCSHRLDLPVGVEVTRATPSAGHLSSSSIYPVCLAPYLIVTTCSDSRVRFWRCSVEGES RVYHWEPWALLNEEEDNNSAVCVPGRPVAVSCSYTGRLAVSFKQPRPGHIPGQSHGPAGD FSMHVSIFECESTGGSEWVLEQTLHLDDFTRPSSTLDPGVSVDSNLFVYSRSDLYMSRDH HSPNIKHYVHLDWLSKEDGSHILTVGVGSNILMYGRISGVVNEQTASKDGVAIITLPLGG SIKQGIRSRWILLRTVDLLSSVDGTPSLPVSLSWVRDGILVVGMDCEMHVYAQWRQDHKP GEAEGDSLSSEDNIAGGVGGGGGQTDTNATTGGSSSAFKGRARSKSVFEGNVAIDEALQA PAGLQEGGLFEAAHSLSPTLPQYHPTQLLELMDLGKVRRAKAILSHLVKCIAGEVAVVRD VEAGEGGTRRHLSRTISVSGSTAKDTIVAGRDGGRDYTEINSIPPLPLYALLSADLDTSY KGGEEGAKGGKVAEVEGARKTGGDQYTDLFQLQAVTTDDFVSFATEKVEKKSRFINLSQY GPTYFGPEHAQVLSSQLMHSSLPGLTRLEQMFLVALADTVATTSSEVSSSTDKQYTGGEA LDECGLRYLLAMRLHTCLLTSLPPLYRMQLLHQGMVHTHSCFTICPDMLSLSGPCSFQGM VEKVGKAAFQRNNDPLDAALFYLAMKKKAVLWGLFRSQRDEKMTVFFKNNFSEDRWRKAA LKNAFSLLGKQRFEQAAAFFLLAGSLKDAVEVCLEKMEDIQLAMVVARLYEADYESSSTC QAILYEKVLGCQRDGSGYHCTKLHPDPFLRSIAFWIMKDYTKALDTLLECIPKEDDENPD VMVKSCNPVVFSFYNYLRTHPLIIRRHYASPEGAVTSSLGLTSEKSSVDEINLIERKLFF TTANAHFKVGCPVLALEVLSKIPKVTKKSVSSSPLSKGSSMANVSSSLPLENGNQGALDW ASPAPVKANPAWGTEESSATLDWSQPLVKLEDDGLQLDWGDDKNDDEDDDDDGGLTMKKT DVETKADEGSGGVRPPGLQREDSQNHLCSQGESEVDVIAEQLKFRACLKILMTELRTLAT GYEVDGGKLRFQLYSWLEKEIGAMHRICNYKVAGKEESQELERWEDGGGVEDVFEESLGG GGGTEAGAYERHQLGRRRLAAKQLHLQSPLPLPTTLPLLSASIATTKTVISNPVLHLSNH IHDILHTITQMELPPHPELMDDRVNLLHTLAASLSACIYQALCDSHSYSSQAEANQFTGM VYQGLLLSERRRLRTESIEEHATPTSAPAQWPGVSSLIALVQSAQGEDQPKLNVLLCEAV VAVYLSLLIHGLGMHAGNELFRLAAHPLSNKMWAAVFGGGAKIIIKPKRNAEITPAAAGK ARTDSSSSVTSEPDSGTKAKPAVPAPPPAEDVDRLRRRFNMRMLVPGRPVKEVPATPPPV PAERPAYREKFIPPELSMWDYFVAKPFLPLSDSGALYDSDESGAEDDDDDDDDAFLSDTQ MTEHSDPNSYSWSLIRLVMVKLALHNVKTFLPLTGLDFTDLPVTSPLGNAVLKTLENWET ILQERMNKFDGPPPNYINTYPTDLSTGGGPAILRHKAMLEPDNTPFKNKNHISFPARRLW HYLVKQEVLQETLIRYIFTKKRKQSECVEGFMDLLSPNCVSGALRSNKVEGDLGYPGRNA KIIHKESDIIMAFAINRANTNEIVLASTHDVQEVDVSTLLAAQPYTWIGEDFDKESHSSD DVDYRSSHTNVAQASSTPSHFNPKDMAASASMPWLGSGQTSMGACVIMKRNLNNVKRMTS HPIFQYYMTGAQDGSVRMFEWNRPQQLICFRQAGNARVTRLYFNSQGNKCGVSDGEGFLS LWQVNQTSSNPKPYVSWQCHTKTCGDFAFITSSSLIATAGQSNDSRNVCLWDTLVSPSNT MVHAFPCHENGATVLQYAPKQQLLISGGRKGFVCVFDIRQRQLLHTFQAHDSAVKALALD ASEDFFVTGSAEGNMKVWKLAGHGLMHSFSTEHAKQSIFRNIGAGVMQVETRPGNRIFTC GADGTLKMRVLPDRYNIPSSIFDIL NT seq 9078 nt NT seq  +upstreamnt  +downstreamnt atgcatctccaccaggtgctaacgggagctgtgaaccccggtgactgctgctattctgtg gggagcgtcaacgacattcctttcaccgcctatggttcaggctgtgatatagtgatcttg gccagtgattttgagtgtgttcagatcatccctggagctcaaaatggcaacatccaggtg ggctgtgtcgagtgctcccaccagctgggcaggattgcagcgtcctatgggaacacagtg tgtatctttgaaccattcgctaccaacccaaacaaacgccacaagcagcttaactaccag tggcaaaagacaggacagttcttccttaatgctatcacctataacctggcctgggaccca caagggaagcgtattctggcagctacagagcgcctgcagctgtgggcccctccgtcagca cacacactgatagaggaggaggatggacccatgaccgatgacaaacctcaccctgccctc aacgactggaagtgtgtctggcagtgcatgactgcaatgtctgttcacatcaccaagtgg tctcctgatggggaatactttgcaacagccggcaaggatgactgtctgttgaaggtgtgg taccccaccactgggtggcgctcttctgtggtgctcccagacctcccagataagaaaggc cctcaggtccacttctccttcatatacctggcccacccccgctctgtcaccggcttgtcc tggaggaagaccagcaaatacatgcccaagggtagtgtgtgtaatgtgctgttgacgtcg tgtgaggacggtgtgtgtaggttgtggtctgagacggtcctgccagaggacagtatcctg ggtggtcagatcactgacaacacatacagttccagcctgccaggcctggggggcaaggac aagattcaacacgccctggagtcgatgagccacctgaagcacctgcgtcgtggtcgtcgg aggtcgtctgccctggtgtctcacactgagctgctgccgtctcagatggggacccacgag acacacacacaccgccacatctctcaccacgctaacgctctctgtcacttccacatctct gccagcatcaaccctgccacggacatcccagcggtgctagcggagtctgccgtgtttact ccggaggatgggagtggaggaggagggtttgtggtccactggctcaacaacaaggacctg tccttcaccacctccatggacctgttcatgctgcagctccgcaagctctcagaacagcag ctggaccaagccaccgacgacgccctcgaccagaacggctcccccattaagtttgacttt gacctagatgagatgtcagagaagggttcatcagagcatggtgaggagggtgagggtggt gagggcagtaccaaggcgtcgtccccaggctccagtagctcggtgcccctgccctccatg ttgctggagaggaagatggaggcgttaactctggagtggaataagagtcctgacatgctg tttaccatccaccccaccgacgggtccttcctggtctggcacgtcaaatacctggacgag tacatccaagggatcttcagacaggtgcaggtgtcgttctcgtcccgtatcccggtggcg ttccctacaggcgacgccaactccctgagtaagaacattctgatgtacgcctgctccttc tccaacgtggatatctccaacgccggggaggagcagggggggagggcccgccgtttgccc cgttctgcctctgctgggctgggttcctcagccctcagcctctctctgggccaagctcca ggcatcggccccgctgtcatgatggtgtccaaacatgtggacgggtctctaaatcagtgg gcggtgacgttcgccgagcgctcggcgttctccaacgttctaaccgtgtctcatacgttc cgttactgcggtcaccggttccacctcaacgaccaggcgtgtcacaccgtcctcccccta ctgctgacctcctcccaccacaacgctctcctcacccccccctccgcccccggcagcatc gacctcgaccagccacccacacacacacctccccccagaggacggcgcaggaagcagctg cgtaacgcggccaccaggaccttccatgacccgaacgccatctacagtgagctgattctg tggagggtggaccacataggacccctgtcctgcactggaggggtgtcagagctggcccgc atcaactccctacacacatcagccttctctaatgtagcatggctgcctaccctggtaccc agctctgtgctaggtacgtactgtaacagttccagtgcgtgcttcgtagcgtcagacggt aacaacttgcgtctctaccaggctgtggtggacgccaggaaactactggacgaactgtca gaccctgagacctcaaaactagtaggagaggtatttaacatagtgagccagcagtcgaca gccagaccaggctgcatcatagaactagatgtcatcactaaccagtgtggatcgaccacc cagctccttcatgtcttccaggaggactttattttggggtataaacctcaggaggaccca gagctctacactacatcctacccttctaccgaggagtaccaccctactccgttctctgag aagttcttcctggttgtcatagagaaggacctgaacatgaactctgtgctgcagatgtgg cacctgcacctacagtccgtgcaggcctgtgtggatgatccggtcccagagaggtcgtac cagtctcagctgacgatcccattccaacagagtacagctgacacatcctcctcccctctc ccccgctcagcctccacagctaacctgcagtcagccagcaaactgatcctcagctccaag ctggtctgtagccaccgcctggacctgcctgttggggtggaggtgaccagggctacgccc tccgcaggtcacctgagttcgtcgtccatctaccctgtgtgtctggccccctacctgatc gtcaccacctgctctgactcccgcgtccggttctggcgctgctctgtggagggggagagc agggtctatcactgggagccctgggctctactcaacgaggaggaggataacaacagtgct gtgtgtgtcccgggacgtcctgtagccgtgtcctgttcctacactggacgactggctgtg tccttcaaacagccccggcccggacacatcccgggacagagccatggtccagcaggggac ttctccatgcacgtgtccatctttgagtgtgagtctacgggggggtctgagtgggtgttg gagcagaccctccacctggatgacttcactaggccctcctctaccctggaccctggagtc agtgtagactccaacctctttgtgtacagcaggtctgacctgtacatgagtcgcgaccac cactctcccaacatcaaacactacgtccacctggactggctgtccaaagaggacgggtct catatcctcacggtgggggtgggatccaatatcctcatgtacggtcgcatctcgggcgtg gtcaatgaacagaccgcaagcaaggacggggtggcgatcatcaccctacctctagggggc agcatcaaacagggtatccgttcacgctggatcctgctgcgcactgtggacctgctctcc tctgtagacggcaccccctccctgcccgtgtccctgtcctgggtgagggacggcatcctg gtggtgggtatggactgtgagatgcacgtgtacgcccagtggcgccaggaccacaagccc ggcgaggccgagggggacagcctctcctctgaagataacatcgccgggggggttggaggg ggcggggggcagacggacaccaatgcaaccacggggggatcctcgtcggcgttcaagggg cgcgcccggtccaagagtgtgtttgagggcaacgtggcaatcgacgaggctctccaggcg ccggcggggctgcaggaggggggtctgttcgaggcagcccactccctgtcccccaccttg cctcagtaccatccaacacagctgctggagctcatggacctggggaaggtccgccgcgcc aaggccatcctgtcccacctggtgaagtgtatcgctggggaggtggctgtggtgagggac gtggaggcaggtgagggtggaaccagacgccacctgtcccggacaatcagtgtgagcggc agtacggctaaagacaccatcgtggccggtcgcgacgggggacgagattacacagaaatc aactccattccccctctacccctctacgctctgctctctgctgacctggacacctcctat aagggaggagaggagggggcgaagggagggaaggtggccgaggtagagggggcgaggaag acaggaggagatcagtacacagacctgttccagttgcaggcggtgacgacagatgacttt gtgagcttcgctacagagaaagtagagaagaagtctagattcatcaacctgtctcagtac ggacccacctacttcggaccagaacacgcacaggtgttatctagtcagctgatgcattcc agtcttccaggtctgaccaggttggaacagatgtttctggtggctctagctgatactgta gctaccaccagttcagaggtcagcagctccactgacaaacagtacacaggtggtgaggcc ctggatgagtgtgggttgaggtacctgttagccatgcgtctacacacctgtctcctcacc tctctacccccactgtaccgcatgcagttgctgcaccaaggtatggtacacacacactcc tgcttcacaatctgtccagatatgttgtctctctctgggccctgttccttccaggggatg gtggagaaggtgggtaaagcagcgttccagaggaacaacgatcctttagatgcagctctg ttctacctggccatgaagaagaaggctgttctctggggcctgttcaggtctcagcgtgat gagaagatgacggtattctttaagaataacttcagtgaggaccgctggcgtaaagcagct ctgaagaacgctttctctctgctggggaaacagcgctttgaacaggctgctgccttcttc ctgctggctggctccctgaaagacgccgtcgaggtgtgcttggagaagatggaggatatc cagttggccatggtagtagccaggctgtacgaggctgactatgagagcagttccacctgt caagccatcctgtatgagaaggttttgggctgtcagagggacgggtcgggctaccactgc accaaactacacccggacccattcctacgcagcatagccttctggatcatgaaggactac accaaggccctggacacgctgctagagtgcatccccaaagaggatgatgagaacccagat gtgatggtgaagtcgtgtaacccagtggtatttagtttctataactacctgaggacacac cccctgatcatccgccgccactacgcgtccccagagggtgctgtgacatcatcactaggc ctcacctcggagaagagcagcgtcgacgagatcaacctcatcgaacgcaaactcttcttc accaccgccaacgcacacttcaaggtgggctgtccagtgcttgccctggaggtgctctct aagatccccaaggtgaccaagaagtcagtctcctcgtcccccctaagtaaaggctcttcc atggccaacgtcagctctagcctgcccctggagaatgggaaccaaggggccctggactgg gcctctcctgccccagttaaggccaatcctgcctggggtacagaggagagctcagccaca ctggactggagtcagcctctggtcaaattggaggacgatggactccagctggactgggga gatgataagaacgatgatgaagatgatgatgatgatggtggtctgacaatgaagaagact gatgtggagaccaaagctgacgaggggtctgggggggtgagaccacctgggctgcagaga gaggactctcagaaccatctctgctctcagggtgagtctgaggtggacgtgatcgcagag cagctgaagttccgagcgtgtctgaagattctgatgacagagctcaggacgctagctaca ggctatgaggtggatggagggaagctgcgctttcagctctacagctggttagagaaggag ataggagccatgcaccgcatctgtaactacaaggtggcggggaaggaggagagccaggag ctggagagatgggaggatggaggaggagtagaggacgtgtttgaggagtccctggggggt ggcgggggtacggaggcgggggcgtatgagcgccaccagctggggcgtaggcgtcttgca gccaagcagcttcatctccagtcccccctgcccctccccaccaccctccccctcctctca gccagtatcgccaccaccaagacggtgatctccaaccctgtcctccacctcagcaaccac atccatgacatccttcacaccatcacacagatggagctgcctccacaccctgaactcatg gacgacagggtgaatctcctgcacaccctggctgcctctctgtctgcctgcatctatcaa gccctgtgtgacagccatagctacagcagccaggcagaggccaatcagtttacagggatg gtgtaccagggtctgctgctgagtgagaggagacggctacgcaccgagagcatcgaggag cacgctacacccacctctgcccccgcgcagtggccaggtgtgtcctctctgattgctctg gtccagtcagcccagggcgaggatcagcccaagctcaacgtgttgctgtgtgaggctgtg gtggcagtttacctgtccctgctcatccacgggctgggcatgcacgctggcaacgagctg ttccgcctcgctgctcaccccctcagcaacaagatgtgggcggccgtgtttgggggtggt gctaaaatcatcatcaaacccaaacggaacgccgagatcactccagcagcagcaggtaaa gctagaacggactcgtcatcgtcagtgacctctgaacctgactcagggactaaggctaaa ccagccgtgccagcccctcccccggcagaggatgtagacagactcagacgaaggtttaat atgaggatgctggttcctggtcgtccagtaaaggaagtccctgccaccccccctcccgtc cctgcagagagacccgcctacagggagaagttcattcctccagagctcagcatgtgggac tactttgtggccaaacccttcctgcccctgtcagacagtggagctctgtatgactcagat gagagcggagcggaggatgacgatgacgatgatgatgatgccttcctctctgacacgcag atgactgaacactctgaccccaactcatacagttggtctctgatccgtctggtcatggtg aaactggctctacataacgtcaagaccttccttcctctcactggactggacttcacagac ctgccggtgacgtctcctctggggaatgctgtactgaagacactagagaactgggagacc atactccaggagaggatgaacaagtttgatggtcctcctcccaactacatcaacacctac cccactgacctcagcacaggaggggggcctgccatactgagacacaaggccatgctggag cctgacaacacacctttcaagaataagaaccacatttcgttccctgcgaggcgtctctgg cactacctggtgaaacaggaagttcttcaggagactctgattcgctatatcttcactaag aagaggaagcagagcgagtgtgttgaaggctttatggatctcctcagcccaaactgtgta tctggagctctcaggtccaacaaggtggagggagacttaggctacccaggaaggaatgct aagatcatccacaaggagtctgacatcatcatggccttcgccatcaacagggctaacacc aatgagatagtgctggcgtccactcacgatgtgcaggaggttgatgtgtccactcttcta gctgctcagccctacacctggataggagaggactttgacaaggagtcacacagttctgat gacgtggactaccgttcttcccacactaacgttgcccaggcctcctctaccccgtcccac ttcaaccccaaagacatggcagcctctgcctccatgccctggctggggagtgggcagacc agcatgggggcttgtgtgattatgaagaggaacctgaacaatgtgaagagaatgacctcc caccccatattccagtactatatgactggggctcaggacggcagtgtccgtatgtttgag tggaacaggccacagcaactcatctgcttcagacaggcaggcaacgccagagtcacacgc ctctacttcaactcacagggaaacaagtgtggtgtatcagatggagaaggcttcctcagt ctgtggcaggtcaaccagacctcctccaaccccaagccctacgtgagttggcagtgccac actaagacctgtggtgattttgccttcatcacttcctccagtctcatcgcaacggcagga cagtccaacgacagcagaaatgtatgcctgtgggacactcttgtttcacctagtaacacc atggtgcatgccttcccgtgccatgagaacggtgcaacggtgttgcagtacgctcccaag cagcagctgttgatctcgggaggcaggaagggctttgtgtgtgtgtttgacatccgacag agacagctgctacacaccttccaggcccacgactcagccgtcaaagccctggcgctcgac gcctctgaagacttcttcgtaaccggctcagctgaggggaacatgaaggtatggaaactg gcaggccatggcctcatgcactcgtttagcacagagcatgccaagcagtccatcttccgg aacatcggagcgggcgtcatgcaggtggagacccgccccggcaaccgcatattcacctgc ggcgccgacggaaccctcaagatgagggttctacccgaccgctacaacatcccctctagt atcttcgacattctgtag

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