Salmo salar (Atlantic salmon): 106562962 Help Entry 106562962         CDS       T04363                                  Name (RefSeq) collagen alpha-1(V) chain-like   KO K19721   collagen type V/XI/XXIV/XXVII, alpha Organism sasa  Salmo salar (Atlantic salmon) Pathway sasa04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:sasa00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     106562962  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:sasa00536]     106562962 Glycosaminoglycan binding proteins [BR:sasa00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    106562962 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI Laminin_G_2 Laminin_G_3 Laminin_G_1 Motif Other DBs NCBI-GeneID:  106562962 NCBI-ProteinID:  XP_013983572 UniProt:  A0A1S3KY06 LinkDB All DBs Position ssa11:complement(52567540..52702515) Genome browser AA seq 2002 aa AA seqDB search MDTHIRWKVKRRIKDAQITLAIILLFVTSQASSVEPADLLKILDFPSLPDGVTKTTGFCA HRKSTKGADVAYRVSKEAQLSAPTKQLYPADVFPEDFSILATVKPKKGSQSFLLSVYNEQ GIQQLGVEVGRSPVFLYEDHTGKPSPEDYPLFRGLNLADGKWHRVAISVHKQSITIILDC KKKTTQKLSRSPHPIIDTKGIVVFGTRILDEEVFEGDIQQLMIVADHRAAYDYCEHYSPD CEVPVPEQPQAQDPNTDEYNTEEDSYYYEYPYYEDTDGKPSETETDEAAGPATEDVKVSV PESGRVVTSVKEVVSSVRETASQGAEGKVLTSTANAEAAAAAGAGEDTSRYDNYDTESYG NYETYYDESTALPDVTRRVTISSSSMGTGAGVELDLGSKVDLGTGAEIEKVITTSGGVTM TRNKTSVATAYDENYGEGYDLSYGEGEEDEYGVGGGGHGSRTSSSSTVEIGAGGGSVSVG GSSVSVGGGSVSVGGSASAGGGAASAGGGAGGAGAGAGGSVARGAGGQGVDIEGDYTDLD GVGFKEESISEYGEEDYGYGDPDYGGQEEKVLPAERDEYYGQVDGSRGEKGQKGEPAIIE PGMLVEGPPGSEGPTGLPGPPGSSGPPGSPGDAGERGPNGRAGLPGADGLPGPPGTVLML PFRFSSGGDSGQKGPQVSAQEAQMQAIMQQARLAMRGPTGPMGLTGRSGPLGSPGVAGLK GDSGETGPQGPRGPMGSHGPPGKPGRRGRAGSDGARGMPGQTGAKGDRGFDGLAGLPGEK GHRGEAGPHGPPGPTGEDGERGDDGEIGPRGLPGEPGPRGLLGPKGPQGPPGQLGVTGMD GHPGPKGNIGPQGEPGPSGQQGNPGAQGLPGPQGAIGPPGDKGPTGKPGLPGMPGADGPP GHPGKEGPNGEKGHLGPTGSQGPIGYPGPRGVKGADGVRGLKGGKGEKGEDGFPGFKGDM GIKGDRGELGPAGPRGEDGPEGPKGRSGLPGDAGPLGPNGEKGKLGVPGLPGYPGRQGPK GSQGFQGFPGANGEKGARGLAGKAGPRGQRGPTGPRGERGPRGPTGKAGPKGTSGSDGPP GPPGERGLPGPQGPTGFPGPKGPPGPAGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQ GPTGETGPMGERGHPGPPGPPGEQGLPGSAGKEGAKGDPGPAGPAGKDGPPGLRGFPGER GLPGPVGAHGLKGNEGPNGPPGPAGSPGERGPAGTAGPTGLPGRPGPQGPPGPAGEKGGP GEKGPQGPAGRDGVQGPVGLPGPAGPLGAPGEDGDKGEIGEPGQKGSKGDKGEHGPPGPT GPQGPVGAPGPAGADGEPGPRGQQGLFGQKGDEGARGFNGPPGPVGLQGLPGPGGEKGET GDVGQMGPPGPPGPRGPSGPPGADGPQGPPGGIGNPGAVGVKGDSGESGEPGLQGELGGP GPRGERGEKGEGGPAGSAGPPGPKGPPGDDGPKGSPGPSGFPGDPGPPGEIGQAGLDGPP GDKGDDGEAGQPGSPGPTGESGPSGPPGKRGPHGTVGPEGRQGEKGAKGESGLEGPQGKT GPVGPQGAPGKQGSEGLRGIPGPVGEQGLPGSSGPDGPPGPMGPPGLPGLKGDSGIKGEK GHPGLIGLIGPPGEQGEKGDRGLPGPQGTSGPKGDNGIAGPSGPLGPLGPPGLPGPPGPK GAKGSSGQTGPKGETGVPGQPGPPGPPGDVIHPLPMQSNPKRSRRNIDASQMMDEANADA NYKDYDDGMEEIFGSLNSLKLEIEQMKHPLGTQGNPARTCKDLQLCHPDFPDGEYWIDPN QGCSRDSFKVHCNFTAGGESCIYPDKKSEGTRLTSWVKEIPGSWFSEFKRGKLSKMAKWP KDAPGSWYSRYKRGSMLSYVDAEGNPIGVVQMTFLRLLSAAARQNLTYNCYQSVAWHDQD GDSYDKAIRFLGSNDEEMSYDNNPYIRAVVDGCALKKGYEKTVLEINTPKVEQVPFVDIM FNDFGGAAQKFGFEVGPVCFIG NT seq 6009 nt NT seq  +upstreamnt  +downstreamnt atggatacccatataagatggaaagtaaaacggaggataaaggacgcgcaaatcacttta gcaataattctactttttgtcacatcgcaagccagttcagtggagccagcggacctcttg aagattttagattttcccagtttacctgacggcgttacgaaaacgacaggtttctgcgcg cataggaagtcaacaaaaggagccgatgtggcctacagagtatccaaagaagcccagctc agcgcccccaccaaacaactgtaccctgctgatgtgttccctgaggacttctccatcctg gctacggtgaagcctaagaagggctcccagtccttcctcttgtctgtgtataacgagcag ggcatccagcagctgggggtagaggtgggacgctcccctgtcttcctgtatgaggaccac acaggcaaacccagcccagaggactaccccctcttcagaggactcaacctggctgacgga aagtggcaccgagtggccatcagtgttcacaaacagagcatcaccatcatcctggactgt aaaaagaagaccacccagaaactatccaggagcccacaccccatcatcgacaccaaagga attgtggtctttgggactagaatactcgatgaagaagtctttgagggagacatccagcag ctgatgattgtagccgatcaccgtgctgcctatgattactgtgagcactacagccccgac tgtgaggtccctgtcccagagcagccccaggcacaggaccccaacacagatgaatacaac acagaggaggacagctattactatgagtatccttactatgaggacacggatgggaagcct tctgagactgagacggacgaagcagctggacctgccacggaagacgtaaaggtgtccgtg ccagagagcggccgtgtcgtcacctccgtcaaagaggtggtatcttcagtaagggagaca gccagtcagggagccgagggcaaagtgttgaccagtaccgccaacgctgaagccgccgct gctgctggagctggggaggataccagccgttacgacaactacgatacggaaagttacggc aactacgagacgtactacgacgagtccacggccctgcccgatgtcactcgcagggtcacc atcagcagtagcagcatggggacgggcgcaggggtggagctggacttggggtcaaaggtt gacctgggcacgggggcggagattgagaaggtcatcaccactagtggaggagtcaccatg acacgcaacaagacctcagtagcaacagcctacgatgagaactatggcgagggctatgac ctgtcctatggagagggagaggaggatgagtacggagtcggcggaggtggccacggcagc agaaccagcagcagcagtactgttgaaatcggtgctggtgggggatccgtatcagtcggg ggcagttctgtttctgttggtggcggttccgtctctgtgggtggatctgccagcgccgga ggcggggcggcgagcgccggaggcggggcggggggagccggagccggagctgggggttcc gttgctaggggagcagggggccagggtgtggatattgagggagattacactgatctggat ggtgttgggtttaaggaggagtccatctctgagtacggggaagaagattatggctatgga gacccggactacggtggacaggaggaaaaggtgctgccggcagagagagacgaatactat ggacaggttgatgggtctcgaggagagaaaggacagaagggagagcctgctatcattgag cctggaatgctggtggagggtccacccgggtctgaaggcccaacaggtctccctggaccc ccaggttcctccggccccccgggcagccccggagatgcaggagagaggggtccgaatggt cgtgctggtcttcctggtgcggatggtctgccaggacctccagggactgtcctcatgctg cctttccggttcagttctggaggagactctggacagaagggacctcaggtgtctgctcag gaggctcagatgcaagccatcatgcaacaggccaggcttgcgatgcgtggtcctactggc cctatgggtttgactggtagatctggtcctctgggttctccaggtgtggctggactgaag ggagattctggagagaccggtcctcagggacctcgtggaccaatgggttctcatggaccc cctgggaagcctggtagaaggggacgtgctggatctgatggagccagaggcatgcctggt cagaccggagccaagggagacagagggttcgatggtttagccggacttcctggtgagaag ggacacagaggcgaagctggtccccatggacctcccggacccacaggagaggatggagag agaggagacgatggagagattgggccacgtggtctgcctggtgagccaggacctcgtggt ttgctgggaccaaagggacctcagggacctcccggacaacttggtgtgactggaatggat ggccaccctggacccaaaggaaacattggaccccaaggagagcctggccccagtggacag caaggaaaccctggtgctcagggacttccaggtcctcagggagccatcgggccccctgga gataagggtcctaccggaaaaccaggactgccaggaatgcccggagctgacggacccccg ggtcaccctggaaaggaaggacccaacggagagaaaggacatttgggtcccactggctct caaggcccaatcggttatcccggtccccgaggcgtgaagggagccgatggagtacgaggc ctgaaaggaggaaagggtgaaaagggagaagatggattccctggcttcaagggagatatg ggaatcaagggtgacaggggtgagctgggacctgcaggacccagaggagaggacggacct gaggggcccaagggtcgctccggtctccctggagatgctggccctctcggacccaacggc gaaaagggcaaactgggtgttccagggttgccaggataccctggaagacaagggccaaag ggatctcagggattccaaggcttccccggagccaacggagagaaaggagcaaggggactt gcagggaaggctggcccaagaggacagagaggaccaacgggacctcgtggagagagggga ccaaggggaccaacaggaaaagctggaccaaagggtacctcaggaagtgacggacctcca ggacctcccggtgagaggggtcttccagggcctcagggaccaacaggattccccggacca aagggcccacccggccccgctgggaaagatggtctgcccggacaccctggacagagagga gagactggtttccaaggcaagactggcccacctggacccccaggagtggtcggacctcag ggccccacaggtgagactggtccaatgggagaacgtggccaccccggacccccaggccca cccggtgaacagggtcttcctggatctgctggtaaagagggagctaagggtgacccaggt cccgctggcccggctggtaaggacggtccccctggtctgagagggttcccaggagagaga ggtctacccggaccagtgggggctcatggcctgaaagggaatgaaggccccaacggccca cctggacctgctggttcccctggtgagcgtggtcctgctggcacagccggacccaccgga ctccccggacgaccaggacctcagggacccccaggacccgcaggagagaagggtggaccg ggagagaaaggaccccaaggccccgctggtagagacggtgtccagggaccggtgggtctg cccggccccgctggacctcttggagccccaggagaggatggagacaagggggagattggc gagccaggtcagaagggaagcaaaggagacaaaggagaacatggtccacctggtcctact ggtccccaaggcccagttggagcgcctggtcctgctggagctgatggagagcccggtccc agaggtcagcagggtctgtttggccagaagggagatgaaggagcccgaggattcaacgga cccccaggcccagtgggactgcagggattgcccggtcccggcggcgagaagggagaaacc ggagacgttggtcagatgggtcctcccggtccccctggccccagaggcccctccggaccc ccaggagctgatggccctcagggaccccctggtggtattggaaaccccggtgctgttgga gtgaagggtgattcaggtgaaagcggagagcctggtcttcagggagaacttggcggacct ggcccaagaggagagcgaggagagaagggagagggtggtcccgctggctctgctggaccc cccggccctaaaggtccccctggagacgacggtcctaaaggaagtcctggtccaagtggt ttccctggtgatcctggtccccctggcgagatcggacaggccggtttagacggtcctcct ggtgacaagggagacgacggagaggctggtcaacccggttcccctggacccaccggagag tctggtccttctggcccaccagggaagagaggcccccatggaacagttggacccgagggc aggcaaggagagaagggagccaagggagagtctggtctggagggcccacagggaaagaca ggcccagttggtcctcagggagcacctggcaagcaaggttctgaaggtctcagaggtatc cctggcccagttggggaacaaggtcttccgggttcttcaggccctgacggaccccctgga cctatgggtcctccaggattacccggtttgaagggagactctggtattaagggtgaaaag ggccaccctggtcttatcggtttgatcgggcccccaggtgagcagggagaaaagggtgac agaggtctgccaggcccccagggaacatcaggacccaaaggagacaatggtattgctggc ccctcaggtcctcttggtcccctgggacccccaggattacccggtcctcctggacctaaa ggagctaagggatcatcgggtcaaactggtcccaagggagagaccggtgttcctggacaa ccagggcctcctggtcctcccggtgatgtcatccacccgctacccatgcagtcgaatccc aagaggagccgcaggaacatcgacgccagccagatgatggacgaggccaacgccgatgcc aactacaaggactacgacgacggcatggaggagatcttcggatccctcaactccctcaag ctggagatcgagcagatgaagcacccgctgggaacgcagggcaaccctgcccgcacctgc aaggacctgcaactctgccaccccgacttccccgatggtgaatactggatcgaccccaac cagggttgctcgagggactcgttcaaggtccactgcaatttcacagcaggaggagagagc tgcatctaccctgacaagaagtctgaagggactaggctcacatcctgggtaaaggagatc cctggctcctggttcagtgaattcaaacgtggtaaactgagcaaaatggcaaaatggccc aaagacgccccaggctcttggtatagtcgctacaagcgaggttccatgctctcgtacgtg gacgctgagggcaaccccatcggtgtggtccagatgaccttcctgcggctgctgagcgca gccgcccgccagaacctaacctacaactgctaccagtcggtggcctggcacgaccaggac ggggactcgtacgacaaggccatccgcttcctggggtccaatgatgaggagatgtcctac gacaataacccctacatcagagccgtggtggacggctgtgcgttgaaaaagggctatgaa aagacagtacttgagatcaacacaccaaaggtggaacaggtgccttttgttgacatcatg ttcaatgatttcggcggagccgcgcagaagtttggattcgaagtgggtcctgtctgtttc atcggctaa

DBGET integrated database retrieval system