Salmo salar (Atlantic salmon): 106563260
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Entry
106563260 CDS
T04363
Name
(RefSeq) nuclear pore complex protein Nup214-like
KO
K14317
nuclear pore complex protein Nup214
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106563260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106563260
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
106563260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_NUP159_NUP214
Nup214_FG
Beta-prop_EML_2
Beta-prop_WDR35_TULP_N
WD40_WDHD1_1st
WD40
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
WD40_Prp19
Beta-prop_RIG_2nd
ANAPC4_WD40
WD40_CDC20-Fz
Motif
Other DBs
NCBI-GeneID:
106563260
NCBI-ProteinID:
XP_013984157
UniProt:
A0A1S3KZN5
LinkDB
All DBs
Position
ssa11:68409516..68467981
Genome browser
AA seq
2023 aa
AA seq
DB search
MSDDPDSPPEREMKDFQFRQMKKTRVFDSPDDLPKDRSSLLAISNKFGLTFVGLDKKIKV
YHTRDILAADKVDGNSNEIIEGIAALTDVPVELPVHNLGLSSDELTLSVSGMSEESGLSL
DFYDVRTFINKARLQKLPFVTLRPGVGLGIIVQDLKWNPVQASMLATCLSDGSMMVLEVT
DSVTVQAQLPATEGITCVCWSPKGKQVAAGKMNATVSQYTPGLQEKKVIPCPSFYSSDNP
VKVLDVQWLSTFVFAVVYAAADGCPETPPELVVISLPTKTEKREERYLNFNDPVYGTCTE
RQLHYFLSHIEDWDVVLAASAASIEVSVIAKQEDKSNWELWLLEDASRGELPVSQNNDDT
LPLGLAIVYTSQQEIHITDEKTLPPVPTLLLLSTDGVLCPFSLLNLNPGAKQLVAAPTNL
ALDGERLPPAGSAAPPPPYPTTLSSTLGSFPPLRPPSSPTQTPPASLFTTTAPAPAPVSS
SGFSFSMPPSSSTAPPALSLGGYTAFSAAPASGTSAGFSFASKPLTDTPAAASSFSFSAP
KPPVVETTPDPSPTLTPTPQRLATASPITVLRGTPEPATPAVKMNLNDRFLAVETPAPAA
VPASLPFSFTPKPAFFEPTSQPALLPIATRPAAMPVRPVQTSTPPMVAQKPAPATQTSAP
TPQAALSVKALERQLQQRKDSDPVMAGILEEIGHFQKELADLKSRSHKADFRVGTIEEMK
ELRKESKDLHIFTLEIKETTESLHGDISTLKTTMLEGFAGAEDAKAMSELNRDRGYLQLL
YKKPLDPRSEDQLKEIRRLYQYVKFAVEDVNDVLDLEWEKHLEKKKKKQKHMIVPEREAL
FTALANNLDIINQQKQRLDTLVKDLHALRLYNKTAAWSTPGPTQPAAATSTEQGLDNELE
SLRDALLKASLETIPKTSKSSAKMSPVKQSQLRNFLSKRQTPPVRSTAPANLFRSAFLSP
NYYENLDDVSSTSSLSQTLDPDYSHCFEEEPEPEPAPLPVLPTSMPRHPTVVRTPSIAPG
FGAIQSTPFSKVHQGMGLGLSPILSTVPTNKINMRGADSTALATKTVKHGAPPTEKASPV
PLPAQQAAAKAAFLRQMANQKTVVSSSLAESTLKTVPQVVNVQELKDKGPPLPVSTVINS
SVPAPVGQVVQQVLATVANTNQAKRNSTQGILKVSAESIRSASPQGFVFGGPPRPDALVA
LASSSSAPSLGEQSSKAFSSFTTASAGGFSVSSVSQGAPPVKDTSKFFFGSAGATGKMMF
SSSAGEEPFSFIPKSTSPALGSTSSPPPSMSGEPVRPTPTFSQAPKVVGGETLGSFSDLR
VGQGDEEKPSAAAFSFGQPDNGMGLGLGTGTAQFSFGSTLQQGKPAEAAFGEADSTVTDL
SKTAFKPPEPAALSITKPAFSTSAATSFSSLLATPLSSPSPTLEKEPPKAPTPPSDPTPP
PEPVPSQPSPAVAEPEVTTSPVSSVIPSPTIPEKAPTPPASAPSPAPPIASTTPVPPAST
SPPAQAAPSTTPDPAPEAPPPTITPTPEAPPPAYPAPSSDKPGSIFTQPPAITTDSTTIA
VTSLTTVINTAAPAATTTTTPTDSNTAALATGSVFGQPAPAAAGGFSSTGFGAPPAGAGA
GFGKPVFGQTVGGFGQPVANAAGGFGFGQSAFGASPGFGQPAAATTAAAASTAASGGGLF
GAPSASNASSFSFGTPSASTAGSTGTGLFGQPSATPAFGQQSAGFGQGSVFGSNTTTTSS
TGFSFGQPAAFGSSSATSVFGQQPSTGSVFGQQQPSSGGGLFGSGSAPAAGSQQAGGGFF
SGLGGKPSEDAANKNPFGTAAATGGFGQPNQTGGTTLFGNSGAKTFGFGSPASTFGGGEQ
TASGTFSTGGGSVAAQGFGSFSTPTKQTGGFGSAPVFGSPPAFGGSPAFGGSAAFGSAPS
FSSPMGSSASKVFGEGTAAANVGGFGFASTQQSTPSFGALANQSAPSFGNLAQQQQGSGF
GAPQPSGFSGFGQQGGGGFGSAGGFGSNQSSSQTFGAGPGWRS
NT seq
6072 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacgaccctgactctcctcccgaaagggaaatgaaggattttcagttccggcaa
atgaagaaaacccgggtatttgattcacctgatgaccttccaaaggatagatcaagtcta
cttgccatctcaaacaaattcggactgacatttgttggactagacaaaaagatcaaggta
taccacacgcgggacatcctagctgcagacaaagttgatgggaactccaatgaaataatt
gaggggatagcagccttgactgatgtacctgtggagttgcctgtgcacaacctgggcctc
agtagtgatgagctcaccctgtcagtcagcggcatgtcagaagagtctggcctgtcattg
gacttctacgacgttcgcaccttcatcaacaaggcccgactgcagaagttgccgtttgtg
actctgcgacctggagtcggcctgggcataattgtgcaggacctcaaatggaacccggtg
caggcgtccatgctggccacctgtctgtctgacggcagcatgatggtgcttgaggtcaca
gacagcgtcacagtgcaggcccagctccccgccaccgaaggaatcacctgtgtatgctgg
agtcccaaaggaaagcaagtggcagcaggaaaaatgaatgcaacagtcagtcagtacact
ccagggcttcaggagaagaaagtaatcccttgcccaagcttctacagttctgacaaccct
gtcaaagtacttgatgtgcagtggctgagtacgtttgtgtttgccgtggtgtatgcagca
gccgatggctgtccagaaacaccccctgaactggtggtgatctccctccctacaaagacc
gagaagagggaggagaggtacctgaacttcaacgaccccgtctacggcacctgcacagag
agacagctgcactacttcctcagccacatagaggactgggatgttgttcttgccgcatcg
gcagcctccattgaagtcagtgtcattgccaagcaagaagataagtccaactgggagcta
tggctgctggaggacgccagtaggggagagctgcctgtttcacagaataacgacgacacg
ctgcctttgggcctggccattgtctacaccagccagcaggagatccacatcaccgatgag
aagactcttcccccggtgcccactctgctgctgctgtctacagacggagtgttatgcccc
ttttcactgctcaaccttaaccctggggccaagcagctggttgctgcccccaccaacctg
gctctggatggagagagactgccccctgcgggttctgcagctcccccgcccccttaccca
accacactctcatcaacccttgggtcgttccctcctctccgccccccctcgtcccccacg
cagactccccctgcctccctgttcaccaccacagcccctgccccagctccagtctcctca
tccggcttctcattctccatgcccccttcctcttccactgctcctcccgccttgtccctc
gggggctacacggccttcagcgcggccccagcctcgggcacctccgctggtttctccttt
gcctccaagcccctgactgatacccccgccgcagcctcctccttctccttcagtgccccc
aagcctccagtggtggagactactccagacccctcccccactttgacgcccaccccccag
cgcctggccaccgcctcccctatcacggtgctccgaggtacccccgagccagccactccc
gctgtgaagatgaacctcaatgacaggttcctggcagtggagacccctgctccagctgca
gttccagcctctctgcccttctccttcacccccaaacctgccttctttgaacccactagc
cagcccgccctgctgcccattgccaccaggcctgcagccatgccagttcgcccagtccaa
accagtacaccccccatggttgcacagaaacctgccccagccacccagacaagtgcaccc
actccacaggcagcgctgagtgtgaaggccctggagagacagctgcagcagaggaaggac
tcggacccagtcatggctggaatactggaggagatcggccatttccagaaggagctggct
gacctgaagtcgcgcagccacaaggcagactttagagtgggcaccatagaggagatgaag
gagctgaggaaagagtctaaggacctccacatcttcaccctggagataaaagaaaccact
gagtctctccatggggacatcagcactctgaaaaccaccatgctggagggctttgccggt
gcagaggacgccaaggccatgagtgagctcaacagagacaggggctacctgcagctgctg
tacaagaaaccactggacccacgcagtgaagaccaactcaaggagatccgcaggctgtac
cagtatgtgaagtttgctgtggaggatgtgaacgacgtgttggacctggagtgggagaaa
catctggagaagaagaagaagaaacagaaacacatgattgtcccagaaagggaggctctg
ttcacagccctggccaacaacctggacatcatcaaccagcagaagcagagactggacaca
ctggtcaaagacctccatgccctgcggctctacaacaagactgcagcctggagtactcct
ggccccacccagcccgctgcagccacctccacagaacagggtttggacaacgagctggag
agtttgagagatgcactcctgaaagccagtctagagaccattcctaagacctcaaagtct
tcagccaagatgtctccagtgaagcagtctcaattgcgtaacttcctctccaagaggcag
acaccaccagtccgctccaccgctccagccaacctgttccgctcggccttcctctctccc
aattactacgagaatctggacgatgtgagctccacctcctccctgtctcagaccctggac
cctgactactcccattgttttgaggaggaaccggagcccgagcctgcccccctccccgtg
ctgcccacctctatgccccgccaccccacggtggtacgcaccccttccatagccccaggg
tttggtgccatccagtcgactcctttcagcaaggtgcaccagggcatgggcctgggactc
agccccatcctaagcacagttccaaccaataagatcaacatgagaggtgcggacagcacg
gcactagccactaaaacggtgaagcacggagcccctcccactgagaaggcctcacccgtc
cccctccctgcccaacaggctgctgctaaagccgctttcctcaggcaaatggctaatcag
aaaacagtggtcagttcctctctggcagagtctaccctgaagactgttccccaggtggtc
aacgtccaggagctcaaggacaaaggaccgccactgcctgtatccactgtgatcaactcg
tcagtcccagccccggtcggtcaggttgttcagcaggttttggcgacggtagccaacacc
aaccaggccaaacgaaattctactcaaggcatactgaaggtgtctgctgagagtatccgc
tcagcttccccccagggttttgtgtttggcggaccccctagacctgacgccctagttgcc
ctggcctcctccagctcagccccgtcactaggggagcagagcagcaaagccttctcctcc
tttaccacagcgtctgccgggggcttcagtgtctcctctgtgtcccaaggagctccacca
gtgaaggacacaagtaaattcttctttggcagcgctggcgccaccggcaagatgatgttc
agctcctctgccggggaggaacccttctccttcatcccaaaatccacctcccccgccctg
gggagcaccagctcccctcctcccagcatgtcaggggagcctgtaaggcccacccccacc
ttcagccaggcacccaaggtggtcggaggagagaccctggggagtttctcggatctacgc
gtgggccagggggacgaagagaagccctcagcggccgcgtttagctttggccagccggac
aatggaatggggctaggtttaggcacggggacggcccagtttagtttcgggtcgaccctc
cagcaagggaagccagctgaggctgcgtttggtgaggcggattctaccgtgacagactta
tccaagactgcattcaagcctcccgaaccggcagccctgtcgatcaccaagcctgcgttc
tccacgtcagcagccacctccttcagcagcctcctagctacacctctctcttccccgtcc
cccaccttggagaaagagccccccaaagcccccacccccccatcagaccccactccaccc
ccagagcctgttccctcacagcccagccccgctgttgctgagcctgaggttactacctcc
ccagtgtcctcagtcatcccctcccctaccatccctgaaaaagccccaactccccctgcc
tcggccccctccccagctccccccattgcctccaccacccctgtcccccctgcctctacc
agcccaccagcccaggcagcccccagcactaccccagaccctgcccccgaggccccacca
cccactatcacccctaccccggaggccccaccaccagcctacccggcccccagctctgac
aaacctggctccatcttcacccagccaccggccatcaccacagatagcaccactatagct
gtcaccagtcttacgacggtcataaacaccgcagcccccgccgccaccaccaccaccacc
cctactgactccaacaccgcagccctggccacaggctcagttttcggacagcctgctcca
gcggctgccggcggctttagttccaccggctttggtgctccacctgcaggtgcaggggct
ggctttggaaaacctgtattcgggcagacagttggcgggttcggacagcctgttgctaac
gcagccggtggcttcggttttggccagtctgcgttcggggccagccctggatttggacag
cctgcagcagccaccactgctgcagctgctagtaccgctgctagtggaggtggtctgttt
ggagcccccagtgccagcaatgccagcagtttttcttttggcacccccagtgccagtacg
gccggcagtacgggcacgggcctatttgggcagccgagcgcaaccccggccttcgggcag
cagagtgctgggtttggacaaggctctgtgtttggaagcaacaccaccaccacatcctct
actggcttcagctttggacagcctgcagctttcggaagttcctccgctacctcagtgttc
ggtcaacagcccagtactgggagtgtctttggacagcagcagccatccagcggtgggggt
ctgtttggatctggctctgccccggctgcaggctcccagcaggcagggggaggcttcttc
agtggcctggggggcaaacccagtgaggacgccgccaacaagaacccttttggcactgcc
gctgccaccgggggcttcggacagcccaaccagacaggaggaactaccctgtttgggaac
agcggagccaaaacctttggctttggctccccagcgtcaacattcggagggggggagcag
acagctagtggaaccttcagcacgggaggggggagcgtggccgctcaggggttcggctcc
ttctccacccccaccaaacaaacaggtggttttgggagcgcccctgtgttcggtagcccc
cccgctttcgggggctccccagcgtttggggggtcagcagcgtttggctcggccccatcc
ttcagcagtcccatgggctcctcagccagcaaggtgtttggagagggcacggcagccgcc
aacgtgggaggattcggctttgcttccactcaacaaagcacaccgtcgtttggtgctctg
gccaaccagagtgccccatcatttggtaatctggcccagcagcagcaggggtcagggttc
ggagctcctcagcccagcggcttctctgggttcggacagcagggaggaggaggcttcggg
tctgctggcggttttggatcaaatcaatcatcttctcaaacgtttggagccggtccgggt
tggagaagctag
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