Salmo salar (Atlantic salmon): 106563615
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Entry
106563615 CDS
T04363
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106563615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106563615
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
106563615
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
106563615
NCBI-ProteinID:
XP_013984816
UniProt:
A0A1S3L1H8
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Position
ssa11:complement(78831205..78845270)
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AA seq
529 aa
AA seq
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MATELTISESAVPLSEPHQVEDEEHWLYGGENTNKQNAPEGLPGPGDSLQLTSMGNTEEK
DAASQEAKGTEGEEEEDSDSDDDDDVKVTIGNIKTGAPSYMGTGMNLSLKPARGYASAAI
KLQSKGIDIETLGAFNGAPVVEVEMDIFEDKPWRKPGADLSDYFNYGFNEETWKGYCERQ
RRLQLGLEPSAPLSFENKITVQQGRATTLEKDTEPSSIKPDYKPDFLPASVLALAANRLK
AGPPPNRKLGGTIDVIGGQTGAIRRVEGRRREMQEQNPIQVLGDHGNKVQPLVPPSGPPP
PLPLPMGMPPPHFLHPPPPVSGMPPPLHPPGIPPPSITGLFPPPLAPPPTLMMPPVDSSR
APLPFGYNSGESSFISYPPVSSSHMPWGSVLEKGGEDRGRGHWEYQGSHRERDRERDQER
DHTPTTSEYNEDDRYHYYSHDRESEREFEHSYLHVHDSSGGRSREREEHQRDRRHRDKEE
SGKHKSSKRKQHDDEGEGHRRHKHKKSKRSKEDKDVPEDMVGRGEEHKD
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggctactgagttgaccatttcagaatcagcagtcccgttgagtgagccccatcaggtt
gaagacgaagaacactggctgtatgggggggaaaacaccaataaacaaaatgcccccgag
ggtttgcctgggcctggtgactcccttcagctgacttcaatgggcaataccgaagagaag
gatgctgcatcacaggaagccaaaggtactgaaggtgaagaggaggaggacagtgacagt
gatgacgatgatgatgtcaaggtcaccattggtaacatcaaaactggtgcaccttcctac
atgggaacgggcatgaacctgagcttgaaaccagctcgtggctatgcctcagcagccatt
aagctgcagtccaaagggatagatatagagacactaggggccttcaatggtgcaccagtt
gtggaggtggaaatggacatctttgaggacaaaccatggagaaagccaggtgccgacctc
tcagactacttcaactatggttttaatgaggaaacgtggaagggatactgtgagagacag
cgcagactacagcttggcctggagcccagtgctcctctcagttttgaaaacaagataaca
gttcagcagggaagggcaaccactttagaaaaggatacagaaccgtcttccatcaagcct
gattacaagccagactttctccctgcttcagtcctggccctcgccgccaacagactgaag
gcaggacccccacctaacaggaaattgggtggaactattgatgtgattggtggacagaca
ggagccattcgccgggttgaaggccgaaggagggaaatgcaggaacagaatccgatccag
gtgctcggagaccatggtaacaaggtacaacccttggttccaccatcaggacctccccct
cctcttcctcttccaatgggtatgcccccaccacacttcctgcatcctcctccaccagta
tctggtatgcccccacctcttcaccccccaggtatacccccaccttccattacaggcctg
ttcccacctccccttgctcctccccctaccttgatgatgccacctgtggatagcagtaga
gcccctcttccttttggatacaatagtggagagtcaagcttcattagctaccctccagtc
tcatcatcacacatgccttggggctctgtgctggagaaggggggggaagacagaggacga
gggcattgggagtaccaaggaagtcatagagaaagagacagagagagggatcaagagaga
gatcatactccaaccaccagcgaatataatgaggatgaccgttaccactactacagccat
gatcgagagagtgagcgagaatttgagcacagttaccttcatgttcacgacagcagcggt
ggacgtagcagggagagggaggagcatcagcgagacagacgccatcgtgacaaggaggag
agtggtaaacacaagtcttccaaacgcaagcagcatgatgatgagggggaggggcatcgc
agacacaagcacaagaaaagcaaacgcagcaaagaggacaaggatgtcccagaggatatg
gtggggcgtggggaagagcacaaggactga
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