Salmo salar (Atlantic salmon): 106563688
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Entry
106563688 CDS
T04363
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04137
Mitophagy - animal
sasa04140
Autophagy - animal
sasa04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
106563688
04137 Mitophagy - animal
106563688
04148 Efferocytosis
106563688
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sasa03000
]
106563688
Transcription factors [BR:
sasa03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
106563688
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAS_11
PAS_3
bHLH_HIF1A
PAS
HIF-1
PAS_4
HIF-1a_CTAD
PAS_9
HLH
Lipocalin_2
Motif
Other DBs
NCBI-GeneID:
106563688
NCBI-ProteinID:
XP_013984964
UniProt:
A0A1S3L334
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Position
ssa11:complement(81421292..81435473)
Genome browser
AA seq
725 aa
AA seq
DB search
MFPHLGNSLEDACDQKLHKTKRQKDRINGQKRSRVSTERLRAQSRVAAKSRRERESRLFG
ELAAWLPLPSGLTGHIDKASIVRLTLEYLRLRALLDHRDNVTPETRVCSDTVHFTMHGRY
PMAGIFSVETVLESAVGGFMLLVSQNGQVIFTTRDIRTHTGINQMDLIGRSLFDFMHHCD
QREVRDILSKMIATERQQQCDFLLRVKSTLTSQGRAVNQRHTCWKVIHCVGIKKQSHLPE
SACLVLLCRPLPISQCIIRDASLNHKTFLSGHRPDMRFTYCHSGVKELTGYTETELLGQS
VYQYYHTSDCQHIHKAHQSLLSKGQATIGRYRLLLKGGGYVWAETDASVVYNNQTGQPQS
VVCINYILSEVELSEIVFSLQQTEPLLRPCYSELEVGPTLQNEAYPAAETAVHLRNTKIP
TPEHNNEIQTYEGYAELNLEDQMNMNSLSELCELDLDSLAPYIPMDGEDFLLTPVLDGIL
AMIEGPVLPLGLEGHCSVGKFPISAGSFTTHQIKTLQIEPPCDSRGSHTVKESEFGDHMK
LVYRGGSAVFKEGPDHAGLEGLVPNEQWSEKHTSCRHPQALMAAAARLPYRTVEYFPIHP
QDGSTCLCGSPSRQVLWKYTQQPKIPSTGLQPPTNHIDEMSTCHVPFSLPVLSRLDCEVT
LGPTSCLLQGSEITSVLDQAPSRFLHMTTWGINQLSTQYAHPCYAPRSAIEVSSGTSTSY
ADWIT
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgtttcctcatttaggaaattctctggaagatgcttgtgatcaaaagctccataaaaca
aagagacagaaggacagaattaatggccagaagagaagcagggtgagtacggagcggctg
cgggcccagtcccgtgttgcagctaagagcaggagggagagagagagccgtttgtttggg
gagctggcagcatggctacctctgccctctggtctgactggccacatagacaaggcttct
atcgtcagactcacactggagtacctgcgtctgagagcgctgctagaccatcgagacaat
gtcacaccagagaccagggtctgctctgacacagtccacttcaccatgcacggccgatac
ccaatggctgggattttctctgtggagacagtgctggagtctgctgttgggggtttcatg
ctcttggtgtctcagaacggccaggttatcttcactacaagggacataaggacacacact
ggcatcaaccagatggatctgattggtaggagtctgtttgacttcatgcaccactgtgac
cagagggaagtcagagatatcctctcaaaaatgatagctactgagagacaacagcagtgt
gacttcctccttcgtgtgaagagcactctgacctctcagggtcgagctgtcaaccaaaga
cacacatgttggaaggtgattcactgcgttgggattaagaaacaatctcaccttccagag
tcagcctgtcttgtcctattgtgccgacccttacccatctcacaatgcatcatcagggat
gccagcttgaatcacaagaccttcctgagcggacatcgcccggacatgaggttcacctac
tgccattcaggtgtcaaggagctgactggatatacagaaacagaacttctgggccagtct
gtgtatcagtattaccacacatctgactgccagcacattcacaaagcacaccagagcttg
ctctctaagggacaggctaccataggcaggtaccgtctgctgctgaaaggtggtggttat
gtgtgggcagagacagatgcatcggtggtgtacaacaaccagactgggcagccccaaagt
gttgtctgcatcaactacattctaagtgaggtggagctatcagagatagtgttctcactg
cagcaaacagaaccgctactgaggccctgttactctgaacttgaggtggggcccaccctg
cagaatgaggcctatcctgcagcagagacagctgttcatctacgcaacacaaaaatacca
actccagaacacaacaatgagatccaaacctatgagggatatgcagagctcaacctagag
gatcaaatgaacatgaactcactctctgaactatgtgagctggacctggactcattggct
ccatacatacccatggatggagaagacttcctcctcactccagttttagatgggatcttg
gccatgatagaaggtcctgttcttccacttggtttggagggccattgttccgtggggaag
ttccctatatctgctggttctttcaccacacatcaaataaaaaccttgcagatagagccc
ccttgtgactcaagggggtcacatacagtcaaagagtcagagttcggggaccatatgaag
ttagtctatagaggaggcagtgctgtattcaaggagggccctgaccatgccggattggag
ggtcttgtcccgaacgaacagtggagtgagaaacacacgtcctgtagacatccacaggca
ctcatggctgctgctgctaggctgccttaccggaccgtagaatatttccccattcaccca
caagatggatccacttgcttgtgtggatcaccatcaaggcaagtgttgtggaaatacaca
cagcagcccaaaatcccaagcactggccttcagccacctaccaatcatatagacgagatg
tcaacatgccatgttcctttcagcctgccagtactgagcaggctggactgtgaggtcact
ctggggccaaccagctgtctgcttcaggggtcagagatcacctctgtcctggaccaggcc
ccctccagattcttacacatgacaacatggggcataaatcagctctccacccaatatgcc
catccttgttacgcacccagatcagctattgaagtcagctctggcacatcgacatcgtat
gctgactggataacatga
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