Salmo salar (Atlantic salmon): 106563783
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Entry
106563783 CDS
T04363
Name
(RefSeq) transcription elongation factor SPT6-like
KO
K11292
transcription elongation factor SPT6
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sasa03021
]
106563783
03036 Chromosome and associated proteins [BR:
sasa03036
]
106563783
Transcription machinery [BR:
sasa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
106563783
Chromosome and associated proteins [BR:
sasa03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
106563783
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HTH_44
Tex_central_region
SPT6_acidic
Tex_N
Motif
Other DBs
NCBI-GeneID:
106563783
NCBI-ProteinID:
XP_013985110
UniProt:
A0A1S3L2S7
LinkDB
All DBs
Position
ssa11:84638275..84653173
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AA seq
860 aa
AA seq
DB search
MGLLRLFTLKSILVISLFFLLSLRNVVAGLDGVLLSTRGSGWTPREKTASHRLGSFLSTG
IQHAAIHQPFLLLQAARKYSIATYPSTFQGFRSSIVAGRSLADMSDFIDSEAEESEEEFE
EKDLKPKKTQAFMDDEEEEEELNTEDQDEHGNLMGLIDDDVDEDEEEEEKKSGGAGSGSD
SEDEVRHRRKKRNYDDYLDDDDLDLIEENLGVKVKRRKKKYDRVKTMDDDEDDEKDQIAD
EIFHRGDDEDGEGELEEGETVDPPLRRHGERLDEEEEEEGEEESDIDDFIVDDDGQPITK
RRSKKFSGYTDAALQEAQEIFGGDFDFAEFDADGAYEQGEEEEEDQDEEGWDRPKKPTKR
RVGRKSIFELYEPSELESSHMTDQDNEIRSTDMPERFQLRSIPVKPAEDDELEEEAEWIY
RNAFSTPTISMQESTDYLDRGATTNFSRKGPSTIAKIKEALNFMRNQHFEVPFIAFYRKE
YVEPELNINDLWKVWQWDEKWCQLKSRKQNLTRLFRRMQGYQYEQISADPDKPLADGIRP
LDTADMERLKDVQSIDELSDVYSHFLLYYGRDIPKMQNAAKAASKKKKKKKKKIEVNEEG
EEEEVEEEEEEEEEEKGPDLKLASRRDMYSICQSAGLDGLAKKFGLTPEQFGENLRDSYQ
RHETEQFPAEPVELAKDYVCSQFNSPEAVLEGTRYMVAMQIAREPLVRHVLRQTFQERAK
INIKPTKKGKKDMDEAHFGYSFKYLKNKPVKELNGDQFLKMCQAEEEGLLTIDICIDLLG
VKGVAGDQTYFDEIKQFYYRDEFSHQVQEWNRQRTLAIERSLTQFLYPQMAKELKNKLIA
EAKENIIKSCCRRLYNWLKV
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atgggtctacttcgtttgtttacgttgaaatcaatacttgttatttcgttatttttcctt
ttatcgttgcggaacgtggtcgcaggacttgacggtgtactattgtccaccagagggagt
ggatggactccacgagaaaaaaccgcttcacacagactcggaagtttcctttccaccgga
attcaacacgccgctattcatcagccatttttattattacaagctgcacgaaaatatagc
atagcaacatatccttctacatttcaaggatttaggtcaagtatcgtcgcagggagaagc
cttgcagacatgtctgacttcatcgatagcgaggctgaggagtcggaggaggagtttgaa
gagaaagacctgaagcctaaaaagacccaggcgtttatggatgatgaggaagaggaggaa
gagttaaacacagaggaccaggatgagcacgggaacctgatggggctcatcgacgatgat
gtggatgaagatgaggaagaggaagagaagaaaagcggaggagcgggaagcggcagcgac
tcagaggatgaagtcagacacagacgcaagaaacgcaattatgatgactaccttgatgat
gatgatctggacctcattgaggagaacttgggagtcaaagtaaagaggaggaagaagaag
tatgaccgtgtgaagactatggatgatgatgaagatgacgagaaggaccagatcgcagac
gagatcttccacagaggagatgacgaggacggagagggggagctggaggagggagagaca
gtcgacccgcccctacgtcgccatggtgaacgcctcgacgaagaagaggaagaggaggga
gaggaggagtcggatattgatgactttatcgtggacgacgatggccagcctatcacaaag
aggagaagcaagaagttctcaggatacacggacgcagccctccaggaagctcaggagatc
ttcggcggcgactttgacttcgcggagttcgacgccgacggtgcttatgaacagggtgag
gaagaggaggaggaccaggatgaagagggctgggaccggcccaagaagcctacgaagagg
agggtggggaggaagagcatcttcgagctctacgagcccagtgagctggagagtagtcac
atgactgaccaggacaacgagatccgctccacagacatgccagagaggttccagctgcgc
tccatcccagtgaagcctgctgaggatgatgagttggaggaagaggctgagtggatctac
agaaacgctttctcaacccccaccatctccatgcaggagagtacagattacctggacaga
ggggccacaactaactttagcaggaagggccccagcaccatcgccaagattaaggaggct
ctcaacttcatgaggaatcagcattttgaggttccgttcatcgcgttctacaggaaggag
tatgtggaaccggagctcaacatcaacgacctgtggaaggtctggcagtgggacgagaag
tggtgccagctgaagagcaggaagcagaacctgacacgtctgttccggaggatgcagggg
taccagtatgagcagatctctgctgaccctgacaagcccctggctgacggcatcagaccc
ctggacactgctgatatggagagactgaaggacgtccagtctatagatgagctgagtgat
gtgtatagtcacttccttctgtactatggccgagacatccccaagatgcagaacgcagcc
aaggccgccagcaagaagaagaagaagaagaagaagaagattgaggtcaacgaggaaggt
gaggaggaagaggtggaggaagaagaggaagaggaggaggaagagaaggggccggacctg
aagctggcatctcgtagagacatgtacagcatctgtcagagcgccgggctcgatggcctg
gctaagaagtttggtctgactccagagcagtttggagagaatctgagagacagctaccag
cgtcacgagacagagcagttccctgccgagcctgtagagttggctaaagactacgtctgc
agccagtttaacagccctgaggccgtgttggaggggacccgttatatggttgccatgcag
attgccagggagcctctggtcagacacgtcctcagacagacgttccaggagagagccaag
atcaacatcaagcccaccaagaagggaaagaaggacatggacgaggcccactttggctac
tccttcaagtacctgaagaacaagccagtgaaggaactgaatggagaccagttcttaaag
atgtgccaggctgaggaggaggggcttctcaccatagacatctgcatcgacctcctaggg
gtcaaaggggttgcaggtgaccagacgtactttgatgagatcaagcagttttactacaga
gatgagttcagtcaccaggtgcaggagtggaacagacagaggaccctggccatagagagg
tccctcacacagttcctctaccctcagatggccaaggaactcaagaacaaactcatcgcg
gaggccaaggaaaacatcatcaagtcgtgttgcaggaggctgtataactggctgaaggtg
tag
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