Salmo salar (Atlantic salmon): 106564695
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Entry
106564695 CDS
T04363
Name
(RefSeq) collagen alpha-1(XVII) chain-like
KO
K07603
collagen type XVII alpha
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
106564695
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Gene cluster
GFIT
Motif
Pfam:
Collagen
FlgT_N
Motif
Other DBs
NCBI-GeneID:
106564695
NCBI-ProteinID:
XP_013986427
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Position
ssa12:17704996..17734187
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AA seq
1613 aa
AA seq
DB search
MDNLTTTKIVNAGAGGKVVKETVTTTTRLTSLPPTSGGLSSRSALPSTGGGDSTSRAITG
GSSSVLVSSSAAAGSGGGAKSGYGGGSVSKSNTITTIESPSLSSGASGASGAAFRSSGAS
GASFGESKTSGSLSVSGGGLMSSSSSSFFTGSSSGGSSSGFISSSKGAGAGGGGGGFVTG
SSSGSSSGFASSSGTGIGGGDSSSAKMSAGGLGSVTVSKVTRSNYSSLAGAGSGGVKRGG
AQGSASSAVSYSPPAMERKSMTTTMIARSKGYEGRSSGNSSPEYTRREYAAESAAASTHT
RGRSHSRESEIRCRLQSASPTAKRWTELDDVKRLLKGSRSSSISPPRSPTSTLPIPRKAS
VETRTRPNSSQSGQYDSATLDSGMPSYVWSGPTAGGYGYHSNAINRSPTSTLQHSPTTLT
ATGLQNNLALSSTFMNSGLSASSTVHGMQNNLATTTGGILTANGVNAQTVYGVQKNVTST
GVSTTTVAPSSPTSEEVFAKEYKFMLLEKEKAPVKKETERLIMAKDTGKQFSSAGTAIAY
SEDSLKREKKVSSFVETATARTTETNAGSLMKVSTKDKATYAEIHKDESGGGLGFWSCCS
WLKWLLGLLLGLLLLLGLLLGLIALAEEVKRLKARVDALEQASSSSSAHSSRLSSSSAIN
IIDPLESAYIDKTSSPSSTTLLRSDNGINLGVAAGAGPGSANGPGQDPVALQRAVQQIVR
TELQSDTVRATLAHSMKGARGEPGTKGDQGGPGVKGDNGFPGLPGPPGQMGHSGLEGPRG
PKGNAGEAGAEGPPGQKGREGPTGSRGEPGPPGFGEKGDKGSPGEPGGPGPAGTAGPVGP
KGSVGGQGATGIPGTPGPQGFRGEAGAPGPKGEKGPAGPPGNKGDLGEKGLRGTTGDPGQ
RGLPGPDGANGSKGPAGAPGADGEKGSRGDKGLDGLPGPRGPAGPPGDSGLPGIPGLQGP
PGIPGNPGQPGGKGEAGEPGRIINPAGSSSVAIPGPPGSPGPAGVSGSPGLSGPVGPAGL
PGTPGPRGEKGEEGEKGDQGKPGITVQTVETTERRAPVASLPGPPGPPGPPGEPGPQGLL
GKGPPGPEGPQGEPGVPGVGVPGPRGDKGEPGSFVPNSGTFFAGPPGPAGPTGLPGSPGP
QGYQGDPGQPGLPGVPGDPGVGFPGPQGRPGGPGPEGDSGLPGPQGPEGPEGQQGPKGEA
GVPGAPGIPGYSSGGSSRSSPGAPGPPGPPGAPGHDGPPGSGSGTPDILQYITEYLKSDG
VREYMSGPPGPPGVPGPPGGGSVESVDDLASRVIAYIQSGGIASGVPGPPGPPGAPGGGS
TSLDDIISLLQREEVRRYVIGPPGPAGPPGIPGIPWRGGYGFNTHEVAGRVLTLMNDSEY
RGALGAQGPPGPPGVPGPAGPQGPTGPSGQAPYSGSGYRLEEVKDYIQSGLRGRMFGPPG
PPGPPGPQGHKGEQGNSGYSHAFDHRNSEGRRLAETETDFSNIAVRVTDYIKYHGLLRDV
VENRSQLEKSQVVQGPPGPPGPPGAPGFSRVFGSHCNVTDLMEYIRAHGNIVGPPGRPGQ
KGDIGHTGHKGERGLDGIPGRTGLPGLEWKRGGKGEKGEYTLVTNRRKRNVGV
NT seq
4842 nt
NT seq
+upstream
nt +downstream
nt
atggacaatctaacgacaaccaagattgtaaatgctggtgccggtggcaaggtcgtcaaa
gaaacagtaaccacaacaacccggttgacatcactgccgccaacctcaggtggtctctct
tcgaggagtgcgctgccctctactggaggaggagattctaccagtagagccatcacagga
ggcagtagctcagtgctagtatcctcctctgctgcagccgggtctgggggtggagctaag
tctgggtacggagggggatcagtcagcaaatcaaacaccattaccactatagagtccccc
tctttatcctccggtgcttcaggggcctctggcgcagcttttcggtcttcaggggcttcg
ggggcatcgttcggggagagcaagaccagcggctccctctctgtttctggagggggtctt
atgtctagctccagttccagttttttcactggttccagttctggtggttccagttctggt
tttatctctagttccaaaggagcaggagcaggaggaggtggaggcggttttgtcactggt
tccagttctggttctagttctggttttgcctctagttctggtaccggaataggaggaggg
gattcttctagtgccaaaatgtcggccggcggcttgggctctgtaaccgtttccaaggtt
accaggtccaactacagctccttggcgggggcgggttcagggggcgtgaagaggggcggg
gcacaggggtctgcatcctctgctgtcagctactccccccccgccatggagagaaagagc
atgaccaccaccatgatcgcccgctccaagggctacgaaggaagatccagtggaaactca
tctccggaatacacaaggagagagtatgctgcagaaagtgcagctgccagtacacacacc
agagggcggagccacagcagagagagtgagatcagatgcagactgcagagtgcctccccc
acagccaaaagatggacggagctggatgatgtgaagcggctgctgaaggggagtcgctcc
agcagcatcagcccccctcgctcccccaccagcaccctccctatccccaggaaggccagc
gtagagaccagaaccaggccaaacagctcccagtcaggccagtacgacagtgccaccctg
gactcaggaatgccttcctacgtgtggtcaggccccactgctggaggctatggttaccac
agcaacgccatcaaccgatcccccacctccaccctccaacactcacccaccacactcaca
gccacagggcttcagaacaacctggctctcagctctacattcatgaactctggactctct
gcctctagtactgttcatggtatgcagaataacctggccaccaccactggcggtatccta
acagctaatggagtcaacgcacaaacagtctatggtgtgcagaaaaatgtcacaagcaca
ggggtgtccacaaccacagtggcacccagcagtcctaccagtgaagaggtcttcgccaaa
gaatacaaattcatgctgctggagaaagagaaagctcccgtcaaaaaggagacggagaga
ctcatcatggccaaagataccggcaaacagttctcctctgctggcactgctattgcctat
tctgaggactcactgaagagggagaagaaggtgtccagctttgtggagacagctacagcc
agaacaacagaaactaacgctggatccttgatgaaagtgtcaacgaaagacaaagcaacc
tatgcagagatacacaaggacgagtctggaggaggtctgggcttctggtcctgctgctcc
tggttgaagtggctgctgggcctcctgctgggtcttctgctcctcctggggctcctcctg
ggactcatcgccctggccgaagaagtcaaacgtcttaaagctcgtgtggacgccttggaa
caagcctccagctcttcctcagcccattccagtcgcctctcctcctcctcagccatcaac
atcatagaccctctggagtctgcatacatagacaagacctcctctccctcctcgaccaca
ctgctccgctctgataatggtatcaatctgggagtggcagcaggagcaggtccaggatca
gctaatggaccaggccaagaccctgtagctctgcaaagggcagtacagcagatagtcagg
actgagctgcagtccgatactgtacgagcaacacttgcacactcaatgaaaggagcgaga
ggagagcctgggaccaaaggtgaccaaggtggtccaggagtcaaaggtgataatggattc
cctggcctaccaggtcctccaggtcagatgggtcacagtggactggagggcccgagggga
cctaaaggaaatgcaggtgaagctggtgcagagggccccccaggccagaagggccgagaa
ggaccaacgggatcacgtggagaacctggtcctccagggtttggagagaaaggggacaaa
ggttctcctggtgaacccggagggcccggacctgctggcactgctggacctgttgggcct
aaagggtcagtaggtggtcagggtgctacaggtatcccaggaactcctggtccacagggt
ttccgaggtgaagcaggcgctccaggaccgaaaggagagaagggaccagctggacctcca
ggaaataagggcgatctaggagagaaaggactccgcggaacaacaggtgacccaggtcaa
agaggacttccaggaccagacggagcgaatggatccaaaggacctgcaggtgctcccggg
gctgacggtgaaaaaggctctagaggtgacaagggattggatgggttgccaggtcccaga
ggaccagcaggacctccaggagattcaggcctcccaggcattcccgggcttcaaggtcca
ccaggtataccaggtaatcctggtcagcctggaggtaaaggcgaagctggagaacctggt
agaatcatcaatccagctggttccagttcggttgccatccctggacctccaggcagccct
ggacccgctggtgtttccggatcccctggactctcaggtcctgttggccctgctggtctt
cctggaacgcctggtcccaggggagaaaagggagaggaaggagagaagggagaccaggga
aagcctggcattactgtacagactgtggaaaccacagagagacgtgcacctgtggctagt
cttcctggcccacctggccctccagggcccccaggagaaccaggtccccagggtcttcta
ggtaagggtcccccaggtcctgaaggtcctcaaggagagccaggtgtaccaggtgttggt
gtgcccggcccccgaggagataagggagagccaggtagcttcgtgcccaactcaggaacc
ttcttcgctgggcccccaggacctgctggcccaactggtcttccgggatcaccaggaccc
cagggttaccaaggtgacccaggtcagcccggtttaccaggagttcccggagatcccggt
gtcggtttccctggaccccagggacgacctggaggtccaggaccagaaggggacagtgga
cttccagggccccaaggtccagagggccccgaggggcaacagggtccaaaaggtgaggct
ggagttccaggtgctccaggaatccctggctactccagtggtggatcatccaggagttcc
cctggagcaccaggtccacctggacctcccggggcccccggccatgatgggccacctggg
tctgggtctggaacaccggacattcttcaatacatcacagaatacctcaagagtgatggt
gtcagggagtacatgtcgggtcctccgggtcctccgggtgtaccggggccccctggtggc
ggatcagtggagtcagtggacgatcttgctagtcgcgtcattgcgtacattcagagtgga
ggtattgctagtggggtgcctggacctccaggcccgcctggcgctcccggtggaggcagt
acatcgctagatgacatcatcagccttctacagagggaggaagtgcgacgctacgtcatc
ggtcctcctggccctgctggacctcctggcatcccagggatcccatggagaggtggctat
ggctttaatacccatgaggtggctggacgagtcctcactctaatgaatgattctgaatac
agaggtgccttgggcgctcaggggcctccgggtccacctggtgtcccaggccctgctggc
cctcaaggtcccaccggtccttcaggacaggccccctacagcggctctggatacaggctg
gaggaggtcaaggactacatacagagtggtctaagagggcgaatgtttgggcccccaggc
cccccaggtccccctggaccccagggacacaagggagagcagggtaactctgggtacagc
cacgccttcgaccacaggaacagcgagggaagaaggctggctgagactgagacagacttt
tccaatatagcggttcgagtgactgactacatcaagtaccatggtctgttgagggacgtg
gttgagaaccggtctcagctggagaagtcacaggttgttcaaggacccccaggaccccct
ggccctcctggtgcgccaggattcagccgtgtgtttggttcccattgtaacgtcactgac
cttatggaatacatcagagcccatggaaacattgtgggaccccctggaaggccaggacag
aaaggggacataggacatacaggtcacaaaggcgagagaggactggatggcatcccagga
aggacaggcctccctggtctggagtggaaaagggggggaaagggggagaaaggagaatac
acacttgtgaccaacagaagaaagaggaatgttggtgtttga
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