KEGG   Salmo salar (Atlantic salmon): 106564729
Entry
106564729         CDS       T04363                                 
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    106564729
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sasa03021]
    106564729
   03036 Chromosome and associated proteins [BR:sasa03036]
    106564729
Transcription machinery [BR:sasa03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     106564729
   Coactivators
    SAGA/TFTC/STAGA complex
     106564729
Chromosome and associated proteins [BR:sasa03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     106564729
    STAGA complex
     106564729
    TFTC complex
     106564729
    SAGA complex
     106564729
    SLIK complex
     106564729
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st Beta-prop_WDR5 WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_CDC20-Fz WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd EIF3I TFIID_NTD2 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_SCAP WD40_MABP1-WDR62_1st NBCH_WD40 WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_Aladin ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_WDR41 Beta-prop_HPS5 Beta-prop_IFT140_1st RMC1_N Beta-prop_DCAF4 Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_Vps41 Beta-prop_WDR19_1st Tricorn_2nd Beta-prop_VPS8 PEP5_VPS11_N WD40_like PROPPIN WD_LRWD1 Nbas_N Beta-prop_ELP1_1st
Other DBs
NCBI-GeneID: 106564729
NCBI-ProteinID: XP_013986498
UniProt: A0A1S3L6C6
LinkDB
Position
ssa12:complement(22150746..22154627)
AA seq 607 aa
MKRVRTEQIQYTVAQYLKRRQYVDTESSLKGAKLSHSAEEMAANLTVQTELGCANIVSAA
PCQADPQQYETQFSRLRNFLSEAVLPWGQEVSCIMYPLFVYLHLDMVRCSLKGAVDGFYS
RFHGLFLGDAEQRSTVEQLRHVLTQQDVTANPKLLAFLDHKYVVNLTEPAYSYLLRYLQS
EDNSTLCRALSTHVQVEVTSSPRTDYQLYGTTGAGATGAATTAPNSTSSWSGTDGPERGE
VAGVEVPTGIPQSEAALEALQDCIKKVREGPPSLTTVCFYAFQHTEQLLNTAEVSADSKL
LAAGFDSSAVKLWSLRARKLKARPHRTDVSHIRLACDVLEEEADEEDGSGSEIKTLRGHS
GPVFRTAFLTDSSGLLSCSEDTSIRYWDLGSFTNTALYQGHAYPVWDVDVSPCSLYFASG
SHDRTARLWTFSRTYPLRLYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGASVR
LFTGHRGPVLSVAFAPNGKYLASAGEDQRVKLWDLASGALVKDLRGHTDSVTSLSFSPDS
SLVASSSMDNSVRVWDIRNSHGTTHVDGSSSELVGLYTGNTSNVLNVQFMACNLLLVTGT
AQEKHGQ
NT seq 1824 nt   +upstreamnt  +downstreamnt
atgaagcgggtacgcacggagcagatccagtacactgtagctcagtacctgaagcggagg
cagtatgtggacactgaaagttccctgaagggggctaaactgtcccattccgcagaggag
atggctgccaacctcacagtgcagacagagttggggtgtgcaaacattgtctctgctgcc
ccttgccaagctgaccctcaacagtacgagacccaattttccagacttcgcaattttctc
tcagaagcggtgttgccatggggccaggaggtgagctgcatcatgtacccgctcttcgtt
tacctccacctggacatggtgcgctgcagcctgaagggggcggtggatggcttctacagc
cgcttccacggcctcttcctgggggacgccgagcagcgctccaccgtggagcagcttcgc
catgtcctcacccagcaggatgtcaccgccaaccccaagctcctggccttcctcgaccac
aagtacgtggtgaacctgacggagccggcctacagttacttgttacgctacctgcagagc
gaagacaacagtaccctctgcagggccctcagcacccacgtccaggtagaggtcacctcc
tcaccacgcaccgactaccagctgtacgggacgacgggtgcgggagctaccggggccgcc
accacggcccccaactctacctcctcgtggtcgggcacggatggccctgagcgaggagag
gtggcgggggtggaggtccccacagggatcccgcagagcgaggcggccctggaggcactg
caggactgcattaagaaggtgcgtgaggggccgccgtcactcaccaccgtgtgcttctac
gccttccagcacacggagcagctactgaacacggcagaggtgtcggccgacagcaagctg
ctggccgccgggttcgacagctcggccgtcaagctatggagtcttagggccaggaaactg
aaggccaggccacaccggaccgacgtgtcacacatccgcctagcatgcgacgtgctggaa
gaggaggcagatgaagaggatggctcgggcagcgagatcaagaccctgcgtggccacagc
ggtccggtgttccgcacagccttcctgacagacagctcgggcctgctatcctgctcggag
gacacgtccattcgctactgggacctgggcagcttcaccaacacggccctctaccagggc
cacgcctaccccgtctgggacgtggacgtcagcccctgcagcctctactttgccagcggc
tctcacgaccgcactgcccgcctctggaccttctccaggacctaccccctgaggctctac
gccggccacctagcggacgtggactgcgtcaagttccaccccaattcaaactacctggcc
acaggctcaacggataaaaccgtccgcctctggagtacccagcagggggcgtcagtgcgc
ctgttcacaggccaccgcggccctgtgttgtccgtagccttcgcgcccaacgggaagtac
ctggcgtcggcgggcgaggaccagcgggtgaagctgtgggacctggcctcaggggctctg
gtcaaggacctgaggggccacacggacagtgtcaccagcctgtcgttcagccccgacagc
agcctggtggcctcctcttccatggacaactcagtcagggtgtgggacatccgaaactcc
cacgggacgacccacgtggatggctcatccagcgagctggtggggctctacacaggcaac
accagcaacgtgctcaacgtccagttcatggcctgtaacttgctcctggtgacgggaaca
gcgcaggagaaacatggacagtag

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