KEGG   Salmo salar (Atlantic salmon): 106564930
Entry
106564930         CDS       T04363                                 
Symbol
THOC4
Name
(RefSeq) THO complex subunit 4-A-like
  KO
K12881  THO complex subunit 4
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa03013  Nucleocytoplasmic transport
sasa03015  mRNA surveillance pathway
sasa03040  Spliceosome
sasa05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106564930 (THOC4)
  09122 Translation
   03013 Nucleocytoplasmic transport
    106564930 (THOC4)
   03015 mRNA surveillance pathway
    106564930 (THOC4)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    106564930 (THOC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sasa03019]
    106564930 (THOC4)
   03041 Spliceosome [BR:sasa03041]
    106564930 (THOC4)
Messenger RNA biogenesis [BR:sasa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     106564930 (THOC4)
    TREX complex
     106564930 (THOC4)
Spliceosome [BR:sasa03041]
 Complex C
  Other components
   EJC/TREX
    106564930 (THOC4)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    106564930 (THOC4)
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_occluded
Other DBs
NCBI-GeneID: 106564930
NCBI-ProteinID: XP_013986937
UniProt: B5XE82
LinkDB
Position
ssa12:complement(23355435..23358343)
AA seq 272 aa
MADKMDMSLDDIIQQSKKGGGGRGNRGGRSRGSSGRGGSGGRPGGAGSGGRTGGSGPMRS
RQNFSGDRSDSRPTPYSRPRELPDKWQHDMFEGGFGSNAGGGGGAGGGGVETGGKLLVSN
LDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSQGTADVHFERRADALKAMKQYNNVPLD
GRAMSIQHVTSQIRDDNQRRPSQSSNGGSGGFNRDRIGRPNFSDRRGGGDRRAGGGSRGR
GRGGRGGGKPQQLSAEELDAQLDAYNAKMETS
NT seq 819 nt   +upstreamnt  +downstreamnt
atggctgataagatggatatgtctttggatgacattattcaacaaagtaagaaaggtgga
ggtggccgcggaaatcgaggaggccgcagccgaggatcatcgggtcgaggtgggagtgga
ggccgacccggtggcgctggctctggaggccggaccggcggatccgggcccatgaggagt
cgacagaacttcagtggcgatagaagcgacagcagacccacgccatacagcaggcccaga
gagctgccggacaaatggcaacacgacatgttcgaaggtggcttcggcagtaatgctggt
ggtggtgggggagcaggtggtggcggtgtggagactggcggcaagctccttgtctcaaac
cttgacttcggtgtctctgacgctgatatccaggagttgtttgcggaattcggtacattg
aagaaagcggctgtgcactatgaccggtctggccgcagccagggaactgctgacgtccac
tttgagaggagggctgatgcactcaaagccatgaaacagtacaacaatgtaccactcgat
ggccgcgccatgagcattcagcatgtcacctcacaaatccgagatgataaccagagacga
ccatcacagagttcaaacggaggcagtggtggattcaacagagacagaattggacgccca
aatttctcagacaggcggggaggtggagacaggcgggccggcggaggctccaggggcagg
ggtagaggtggacgtggtggaggcaaaccgcagcagttgtctgctgaagagctggatgcc
cagttggatgcttacaatgctaagatggagaccagttag

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