Salmo salar (Atlantic salmon): 106565294
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Entry
106565294 CDS
T04363
Name
(RefSeq) dihydropyridine-sensitive L-type skeletal muscle calcium channel subunit alpha-1-like
KO
K04857
voltage-dependent calcium channel L type alpha-1S
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04010
MAPK signaling pathway
sasa04020
Calcium signaling pathway
sasa04260
Cardiac muscle contraction
sasa04261
Adrenergic signaling in cardiomyocytes
sasa04270
Vascular smooth muscle contraction
sasa04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
106565294
04020 Calcium signaling pathway
106565294
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
106565294
09153 Circulatory system
04260 Cardiac muscle contraction
106565294
04261 Adrenergic signaling in cardiomyocytes
106565294
04270 Vascular smooth muscle contraction
106565294
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sasa04040
]
106565294
Ion channels [BR:
sasa04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
106565294
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
CAC1F_C
Motif
Other DBs
NCBI-GeneID:
106565294
NCBI-ProteinID:
XP_013987715
UniProt:
A0A1S3LA60
LinkDB
All DBs
Position
ssa12:46044085..46081683
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AA seq
1826 aa
AA seq
DB search
MAESGGEPNLQSYIMDEETLKRKQKEKLKKLLATGGNPRPTRSLFFLTLKNPFRKAAINI
VEWKPFEIIILLTIFANCVALAVFLPMPEEDSNNTNSNLESLEYIFLIVFSIECFLKIIA
YGFLFHENAYLRNCWNILDFVCVSVGLFAVIGDFITYISGVEAQPGDKGGGFDMKALRAF
RVLRPLRLVSGVPSLQVVMNSILKSMLPLFHISLLVFFMVTIYAIVGLELFKCKMHKTCY
YTGTNIIATVENEKASPCAQAGNGRRCTINGTECRAGWAGPNNGITHFDNLGFAMLTVYQ
CITTQGWTDVLYWVNDAIGMEWPWMYFLTLILVGSFFVLNLVLGVLSGEFTKEREKGKAR
GEYTEMRETQQLDEDLKGYMEWITQAEVMDADGEGQGLLTLEDGESEAGSLKDMDTMQKI
MYYYKLARKWNIFFRRKCLVYVKSRMFYWWVILLVFLNTLAIATEHHQQTQQLTEWQDTA
NKVLLSLFAIEMFMKMYALGLQQYFMSLFNRFDCFVVSTGILELILVRMDVMTVMGISVL
RCIRLLRLLKVTKYWTSLSNLVVSLLNSTPSIACLLLLLFLFIVIFSLLGMQVFGGKFNF
PNVPKPRSTFDSFPQALISVFQILTGEDWNSVMYDGIMAHGGPTMPGILVSIYFIILFVC
GNYILLNVFLAIAVDNLAEAESLTMAQKEKSEEKKRKKLLRANMPDKATEEKALLAKKLA
AERAKIEGIPTTAKLRVDEFESNVNEIKDPFPPADFPGDDEEEEPDIPDTPRPRPMADLQ
LKEEVVPIPEASSFYIFSSDNKIRKLCHRIINATAFTNIILLFILLSSISLAAEDPIDPM
SFRNQVLASADVVFTSVFTVEVVFKMTVYGAIMHPGSFCRNSFNILDLIVVSVSLLSMLM
ESSAISVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIKTIGNIVLVTMLLDFMFACI
GVQLFKGFKIVYSDVWGNYIRYQEGAIHPMTIHKREWINAELNFDNILEGMLALFTVSTF
EGWPKLLYKAIDSNMEDVGPVYNNRIAISIFFIVYLILIAFFMMNIFVGFVIVTFQEQGE
QEYKNCELDKNQRACVEYALNARPLRCYIPKNQYQYNVWYIVTSCYFEYLMFLLIMLNTM
CLGMQHCNQSTHVTDLSDMLNVIFTVLFTVEMILKLMAFKAKGYFGDPWNVFDFVIVIGS
VVDVILSEVDAALASSGGLYCLHGCAEVNPMQAIADSENARVSITFFRLFRVMRLVKLLN
RSEGIRNLLWTFIKSLQALPYVALLILMLFFIYAVVGMQIFGKIALIDGTYINRNNNFQT
FPHAVLLLFRCATGEAWQEVMLACLYGKRCDPKSDYLPGEEMTCGASFAIIYFMSFYMLC
AFLIINLFVAVIMDNFDYLTRDWSILGPHHLDEFKKIWAEYDPEATGRIKHLDVVTLLRR
IQPPLGFGKFCPHRVACKRLVSMNMPLNSDGTVTFNATLFALVRTALKIKTEGNFEKANE
ELRAIIKKIWKRTSMKLLDQVIPPIGDDEVTVGKFYATFLIQDYFRKLKKRQEEYYGFRP
TKKNAKNEIQAGLRSIEEEAAPELQRAISGDLMNEEEMDRAMEDAAEEGIFRRAGGLFGN
HVDSFTMEEGTRNPNATQVTSQRPLQMSRSDDGEATSSPAYHANEDFFPSTPNKTNNNNV
NNNAGESFSYGIYDRVQVYTISNSRSPPDRDWQLQTVAGPSQDPETHREPLSPQQAQAQA
PDSAFDTLIQEVLINGGLESLARDPRFVSVTKREMTEALNFDPVDMESSATELMNGRRGC
VATPPIKPPRRSQRKANQSTTPRDVV
NT seq
5481 nt
NT seq
+upstream
nt +downstream
nt
atggcggagagtggcggcgagcctaacctgcagtcctacattatggacgaggaaactctg
aagaggaagcagaaggagaagctgaagaagctcctggccacggggggaaaccctcggccc
acacgctccctcttcttcctcacactaaagaaccccttccgcaaagctgccatcaacatt
gtggaatggaaaccgtttgagatcatcatcctgctgaccatctttgccaactgtgtggcc
ctggctgtgttcctgcccatgcctgaggaggacagcaataacaccaacagcaacctggaa
agtctggagtacatcttcctcatcgtcttctccatagagtgctttctaaagataatagcc
tatggatttctatttcacgagaacgcgtatctgcggaactgttggaacatactggatttt
gtctgtgtgtctgtggggctgtttgcagtcatcggggacttcatcacctatatcagtggt
gtggaggctcaaccaggggacaagggaggaggcttcgacatgaaggccctcagggcattc
agggtgctccggcccctcaggctggtctctggagtccccagcctgcaggtggtgatgaac
tccatcctgaaatccatgctacctctgttccacatctccctgctggtcttcttcatggtc
accatctacgccatcgtcggactggagctgttcaagtgcaagatgcataaaacctgctat
tacacaggcacaaatatcatagccacagtggagaatgagaaggcatctccgtgtgcccag
gccggtaatggtcggcgctgcaccatcaacgggacagagtgtagggcgggatgggccgga
cccaacaacggcatcacacactttgacaacctgggcttcgctatgctcactgtctaccag
tgcatcactacccagggctggaccgacgtgctctactgggtgaatgatgccatcggtatg
gagtggccgtggatgtactttctgacgctcatcttggttggctccttcttcgtactcaac
ctggttctgggcgtgctcagtggtgaattcactaaggagcgagagaagggtaaggcgcgt
ggagagtacacagagatgagggagacccagcagctggatgaggatctgaagggctacatg
gagtggatcacacaggccgaagtcatggacgccgacggggagggacagggcctgctaaca
ctggaggatggagaatcggaggcagggagcctaaaggacatggacaccatgcaaaaaatc
atgtactactacaagctggctcgtaaatggaacattttcttccggcgtaagtgtcttgtg
tatgtgaagtcccgtatgttctactggtgggtgatccttctggtgtttctgaacacgctg
gccatcgctactgaacaccaccagcagacccagcaactcaccgagtggcaagacacggcc
aacaaggtgctgctgtctctgttcgccattgagatgtttatgaagatgtacgccctgggt
ctccagcaatacttcatgtctctgttcaaccgcttcgactgcttcgtggtctccaccggg
attctggaactcatcctggtccgcatggacgtcatgaccgtcatggggatctctgtgctg
cgctgcattcgactacttaggctgctcaaagtaaccaagtactggacgtctctcagtaat
ctggtggtgtccctgctgaactcaaccccctccatcgcctgcctgctcctcctcctcttc
ctcttcatcgtcatcttctctctgctgggcatgcaggtgttcggggggaagttcaacttc
cccaatgtgcccaaaccccgcagcaccttcgacagcttcccccaagctctcatcagtgtc
ttccagatcttgacgggggaggactggaactctgtgatgtatgatggcatcatggcgcat
ggcggtcccaccatgcccgggatcctcgtcagcatctacttcatcatcctcttcgtctgc
ggaaactacatcctgctgaatgtgttcctggccattgctgtggacaacctggcagaggct
gagagtctgaccatggcccagaaggagaagtctgaggaaaagaaacgcaagaagctgctc
agggcgaacatgcctgacaaggccacagaggagaaagccctcctggccaagaagcttgca
gcggagagagccaaaatagagggcatcccaaccacagccaagctgagagtggacgagttt
gagtccaacgtgaacgaaatcaaggaccccttccctcctgctgacttccctggtgatgat
gaggaggaggagcctgatatccctgacaccccgaggccacggccaatggcagacctgcag
ctgaaggaggaggtggtgcctattccagaggccagctccttctatatctttagctctgat
aacaagatccgtaagctgtgccaccgcatcatcaacgccaccgccttcaccaatatcatt
ctcctcttcatcctcctcagcagcatctccctggctgccgaggaccccatcgaccccatg
tccttcaggaaccaggtgctggcctccgctgatgtggtcttcacctcagtgttcactgtg
gaagttgtcttcaagatgaccgtatacggcgccatcatgcaccccggctccttctgccgg
aactcctttaatatcctggatctgattgtggtcagcgtatccctcctctccatgctcatg
gagtccagtgctatctctgtggtaaagatcctcagggtgttgagggtgctgaggccccta
agggccatcaacagggccaagggcctcaagcatgtggtccagtgtgtttttgtggccatc
aaaaccatcggcaacatcgtgctggtcaccatgctgctagacttcatgttcgcctgcatt
ggagtccagctcttcaagggatttaagatcgtttatagcgatgtatggggtaactacatt
aggtaccaggaaggtgccatccatccgatgaccatccataagagagaatggatcaatgca
gagctcaactttgataacatcctcgaaggcatgctggctctcttcactgtctccaccttc
gagggctggccaaagttgctctacaaggccatagactctaacatggaggatgtgggtcca
gtgtacaacaaccgcatcgccatctccatcttcttcatcgtctacctcatcctcatcgcc
ttcttcatgatgaacatctttgtgggtttcgtcatcgttacatttcaggagcagggagag
caggaatacaagaactgcgagctggataagaaccagcgtgcgtgtgtcgagtacgccctg
aatgcccggccgctgcgctgctacattcctaagaaccagtaccagtacaacgtgtggtac
atcgtcacctcctgctactttgagtacctgatgtttctgctcatcatgctgaacaccatg
tgtctggggatgcagcactgtaaccagtcaacccatgtgaccgacctgtcagacatgctg
aacgtgattttcactgtgctcttcactgtggagatgatcctcaaactcatggccttcaaa
gctaagggttactttggagacccatggaacgtctttgactttgtcatcgtcatcggcagc
gttgttgacgtcatcctgagtgaagtcgatgcagccctggcctcctctggaggactatac
tgtctccacggctgcgctgaggtgaacccaatgcaagcgatagcagactctgaaaatgcc
cgtgtgtcaatcaccttcttccgactgttccgtgtgatgcgtctggtgaaactgctgaac
cgttctgaagggatccggaaccttctgtggaccttcatcaagtccttacaggccctgccc
tacgtcgccctgctcatcctcatgctgttcttcatctatgctgtggttgggatgcagata
tttgggaagatagcgctaatagacgggacgtacatcaacaggaacaacaacttccagaca
ttcccccatgctgtgctgctgctcttcaggtgtgcgacaggtgaggcgtggcaggaagta
atgttggcgtgtctgtatgggaagaggtgtgaccctaagtcagactacctgcctggggag
gagatgacctgtggagccagcttcgccatcatctacttcatgagcttttacatgctctgt
gccttcctgatcatcaacctgtttgtggcggtcatcatggacaactttgactaccttaca
cgtgattggtccatcctgggtcctcatcacctggacgagttcaagaagatctgggcagag
tacgacccagaggccacggggcgtattaagcacctggacgtggtgactctactgcgtagg
atccagcctcctctgggttttggaaagttctgcccccatagagtagcctgcaagagactg
gtgtccatgaacatgccactcaacagtgacggaacggtcacctttaacgctacgctgttc
gcactggtcaggaccgcactgaagatcaagactgaaggcaactttgagaaggccaatgag
gagctgagggccatcatcaagaagatctggaaacggaccagtatgaagctgctggaccag
gtcatcccaccaatcggagatgatgaggtgaccgtggggaagttctacgccaccttcctg
atccaggactacttcaggaagttgaagaagagacaggaggagtattatggcttccgaccc
accaagaagaacgccaagaacgagatacaggcgggtctgaggagcattgaggaggaggcg
gctccagagctgcagcgagccatctccggagacctgatgaacgaggaggagatggacaga
gccatggaggacgcagcggaggagggtatcttcaggcgggcgggcggtctgtttgggaac
cacgttgattccttcaccatggaggaaggaacccgtaaccctaacgctacacaggtgacc
agccagcggcccctgcagatgagcagatcagacgacggggaggctaccagttcacctgcc
taccatgcaaatgaggacttcttcccctcaacgcctaacaaaaccaacaacaacaatgtc
aacaacaatgccggggagagcttttcttatggaatatatgaccgggttcaggtctatacc
atctcaaacagcagaagtcccccagacagagactggcagctgcagacagtagctggaccc
agccaggaccctgagacccacagagagcccctcagcccccagcaggcccaggcccaggcc
ccagacagcgccttcgatacacttatacaggaggtcttgataaacggggggttggagagc
ttggccagggaccctcgttttgtgtcggtgacgaaacgggaaatgactgaagcgttgaac
tttgaccctgtggacatggaaagttccgccaccgagcttatgaatggtcgcagagggtgc
gttgccacccctccaatcaagccccctcgcagatcacagagaaaggccaaccaatcaaca
acacccagagatgttgtgtag
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