Salmo salar (Atlantic salmon): 106565517
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Entry
106565517 CDS
T04363
Name
(RefSeq) SWI/SNF complex subunit SMARCC2-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
106565517
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sasa03021
]
106565517
03036 Chromosome and associated proteins [BR:
sasa03036
]
106565517
Transcription machinery [BR:
sasa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
106565517
Chromosome and associated proteins [BR:
sasa03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
106565517
PBAF complex
106565517
GBAF(ncBAF) complex
106565517
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
HEAT_GCN1
TrAA12
Motif
Other DBs
NCBI-GeneID:
106565517
NCBI-ProteinID:
XP_013988219
UniProt:
A0A1S3LCK6
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All DBs
Position
ssa12:complement(58825692..58841016)
Genome browser
AA seq
1059 aa
AA seq
DB search
MAVRKKDGGPNVKYFEASDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTRLPMKSFLDFKSGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPVIYLSSDIEAKLLGKLKDIIKRHQGSVTEDKTSSSHVVVP
IPASLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWISASEVEAAVEEAPSPEKPRKVHAK
WILDLDQFNEWMNEEDYEVGEGGPKRKRISAKTLTDEVTTPGDERRDKKPGSAKKRKRSP
SPSPTPPPQESKKKNTKKGCGPTTPYTKSKRGQREEEPEDLTKDLDEPSPVPAVEEVTLP
KTANTKKDSESTPVKGGTMTDLDEQEDESMETAGKEEEEGSPSVKGEPVKGSDLHEDNVT
EQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQ
EYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTP
SSLVPLQPKASQTPAAQQILSFPDKVKEKQPADLQNFGLRTDMYSKKTGPPKSKTAASAM
RDWTEQETLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDTSSSLGP
LAYQPVPFSQAGNPVMSTVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVRR
VEEAARTSGRQDPLYGLEGSGIAGTSLEEGEKPEESSEESKSDSQSSEEKRETKENKEGA
MEEGEKQGENGKKEEERGREGEGEGETEKTDSEMGDGEKEKEGKEGSEEGQREGESEGER
KAKVERDVGEGNLATAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRH
FEELETIMDREREALEYQRQQLLADRQSFHMEQLKYAEMRARQQHFQQIQQHSQTGGPHS
APAPTGPPPQGPSATQSQPTLSTPAPQPAPSPAPPTSSIPSSVQPAEPQPPPSGPHTSPP
RPPGQPPTAHSSTTPTLHEPSAPLPEDTHHSSAPVPPPQ
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaagacggcggcccgaacgtaaaatatttcgaagcgtctgataca
gtctcgcagttcgacaatgttcgcgtttggttgggcaagaattataaaaagtacatccag
gcggagccccccaccaacaagtctctgtccagcctggtggtccagctgctgcagtttcag
gaggaggtgttcggacgacatgtcagcaacccacctctcaccaggttgccgatgaagagt
ttcctggactttaagtctggcggggctctctgccacattctggctgcagcctacaagttc
aagagtgatcagggctggcgcaggtttgactttcagaatccttctcggatggaccgcaat
gtagagatgttcatgactatcgagaaatctctagtacagaacaactgtctgagtcgacca
gtgatctacctgagctctgacattgaggccaagcttctggggaaactgaaggacatcatc
aagaggcaccagggctcagtgactgaagacaagacgtccagctcccatgtggtggttccc
atccctgccagtctggaggaggaggagtgggtgcgtccggtaatgaagagagacaagcag
gtgctgctccactggggatactatcctgacagctatgacacctggatctcagccagtgag
gtggaggctgctgtggaagaagcgcccagcccagagaaacccaggaaggtccatgccaag
tggatcctggacctggaccagtttaatgagtggatgaatgaggaggactatgaggtgggg
gagggggggcccaagaggaagaggatctcagctaagaccctgacggatgaggtcaccacc
ccaggggacgagcgtcgtgacaagaagcccggcagtgccaagaagaggaagcgctcgccc
tccccctcgcccaccccaccaccccaggagagcaagaagaagaacaccaagaaagggtgt
gggcccaccaccccgtacactaagtctaagcgaggccagagagaggaggagccggaggat
ctgactaaagatctggatgaaccatcacctgtacctgcagtggaggaggtcaccctacct
aagacagccaacactaagaaagactctgagtcaacaccagtaaagggaggtaccatgaca
gacctggatgagcaagaggatgaatccatggaaactgcaggaaaggaggaggaggagggc
tctccgagtgtgaagggagagccggtgaaagggtcggaccttcatgaggacaacgtgacc
gagcagacgcaccacatcattatccccagctatgctgcctggttcgactacaacagtgtc
catgctatcgagcgtagagccctcccagagtttttcaacggcaagaacaaatccaaaacc
cctgagatttacctggcctataggaacttcatgattgacacttacaggctgaacccgcag
gagtacctcacctctaccgcctgtcgtaggaacctggccggagacgtgtgcgccatcatg
agggtgcatgcgttcctggagcagtggggtctgatcaactaccaggtggactccgagagc
cggcccacccccatgggccccccgcccacctcccacttccacgtcctggctgacacccct
tccagcctggtgcccctgcagcccaaggcctcccagactccggcagcccagcagattctg
tccttcccagacaaggtgaaggagaagcagccagccgacctgcagaactttggcctgagg
acagacatgtacagcaagaagactgggcctcctaagagtaagactgctgccagcgccatg
cgagactggaccgaacaggagacactactgctgctagagggtctagagatgtacaaggat
gactggaacaaggtgtcggagcatgtgggctcacgcacccaggacgagtgtatcctgcac
ttcctgcgtctgcccatcgaggacccatacctggaggacacgtcctcgtccctgggcccc
ctggcctaccagcccgtccccttcagccaggcaggcaaccccgtcatgagcaccgtggcc
ttcctggcgtccgtggtggacccccgcgtggcctccgcagccgccaagtctgccctggag
gagttttcccgtatgaaggaggaggtcccagcagcactggtggaggcccatgtgaggagg
gtggaggaggcagcgcggaccagtggcagacaggaccccctctacggcctggaaggcagc
ggcatcgcaggcaccagcctggaggagggagaaaaacctgaagagagcagtgaggagagt
aaaagtgacagccaatccagtgaggagaagagggagaccaaggagaacaaagagggagcc
atggaagagggggagaagcaaggagaaaacgggaagaaggaggaggagagagggagagag
ggagaaggagagggagagactgagaagacagactcggagatgggtgatggagagaaggag
aaggaagggaaggagggctctgaggagggccagagagaaggagagagtgagggagagagg
aaggcgaaggtggagcgggatgtgggagaggggaacctggctaccgctgctgcctccgcc
ctggctgctgctgccgtcaaagccaagcacctggctgcggtggaggagaggaagatcaag
tctctggtggctctgctggtggagactcagatgaagaagctggagatcaaacttagacac
tttgaagagctggagaccatcatggaccgagagagggaggcgttggagtaccagaggcag
cagctgctggcagaccgtcagtcgttccacatggagcagctgaagtatgcagagatgagg
gcgcgtcagcagcacttccaacagatccagcagcacagccagactggaggcccacactcc
gccccggcccccactggccctccaccccagggcccctcagccacccagtcccagccaacc
ctcagtacccctgcaccacagccagctcccagcccagcaccccctaccagctccatccct
tcctctgtccagcccgcggagccccagccgccccccagtggtcctcacacctcacctccc
cgcccgccaggccagccccccacggcccactccagcaccaccccaacactccacgagcct
agtgcccctctacctgaggatacacaccactcctcagccccagttccccctccacagtga
DBGET
integrated database retrieval system
