Salmo salar (Atlantic salmon): 106565702
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Entry
106565702 CDS
T04363
Name
(RefSeq) nuclear pore complex protein Nup214-like
KO
K14317
nuclear pore complex protein Nup214
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106565702
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106565702
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
106565702
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_NUP159_NUP214
Nup214_FG
Beta-prop_EML_2
Beta-prop_WDR35_TULP_N
WD40_WDHD1_1st
WD40
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
WD40_Prp19
ANAPC4_WD40
Beta-prop_RIG_2nd
WD40_CDC20-Fz
Motif
Other DBs
NCBI-GeneID:
106565702
NCBI-ProteinID:
XP_013988560
UniProt:
A0A1S3LCJ1
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All DBs
Position
ssa01:complement(125352015..125428624)
Genome browser
AA seq
2029 aa
AA seq
DB search
MSEDPDSPPEREMKDFQFRQMKKTRVFDSPDELPKDRSSLLAISNKFGLTFVGLDRKIKV
YLTGDILASDKVDGNSNEIVEGIAALADVHVELPVHNLGLSSDELTLSASGMSEASGLSL
AFYDVRTFINKARPQKLPFATLQPRAGLGIIVQDLKWNPVQVSMLATCLSDGSMMVLEVT
DSVTVQAQLPATEGITCVCWSPKGKQVAAGKMNATVSQYTPGLQEKKVIPCPSFYSSDNP
VKVLDVQWLSTFVFAVAYAAADGCPETPPELVVISLPTKTEKREERYLNFNDPVYGTCTE
RQHHYFLSHIEDWDVVLAASAASIEVSVIAKQEDKTNWELWLLEDASRGELPVSQNNDDT
LPLGLAIDYTSQQEIHITDEKTLPPAPTLLLLSTDGVLCPFSLLNFNPGVKQLVAAPTSL
ALDGERLPPAGSAAPLPPYPTSSLPSAPAAFPPLRLPLATTPNPPPPASSPASVSLFTAA
PAPASSSGFSFSMPPSSSTAPPAFFLGGSTAFSASPALATSGSFSFSSKPLTETPAAASA
FSVSAPKLPVMEMAPVPAPTPKPTPQRLATASPITVLRGTPEPTTPAVKMNLNDRFLAVE
TPAAAPASQPFSFNSTPKAAFSEPSSHPAPLPIVTKSAAMPGPVQTSTPPTVVQKSAPAT
QTSTPTPQAALSVNALEKQLQPRKDSDPVMAGILEEIAHFQKELDDLKARSHKADFRVGT
TEEMKELRKESEDLHIFTLEIKDTTESLHGDISTLKTTMLEGFAGAEDAKAQSELNRHRG
YLQLLYKKPLDPRSEDQLKEIRRLYQYVKFAVEDVNDVLDLEWEKHLENKKKQKHMIVPE
REALFTALANNLDIINQQKQRLDTLVKDLHALRLYNKTAAWSTPAPSQPAATTPTEQSLD
NELESLRDALLKASLETIPKTTSKSPAKMSPMKQSQLRNFLSKRQTPPVRSTAPANLSRS
AFLSPKYYADLDDVSSTSSLSQALDPDYSHYFAEEEPEPEPAPLPMLPLSMPRHPTVVRT
PSIAPGFGAIQSTPFSKVRQGLGLSPIMSPVPTNKINMGGADSTALATKTVKHGAPPTEK
ATPVPLPAQQAAAKAAFLRQMANQKPAVSGSLTESTLKTVPQVVNVQELNDKGPPPPIST
VISSSVPAPVGQVVQQVLATVANTNQAKRNSTQGILKVSAESVCSASPQGFVFGGPPKAD
APVSLPPSSSAPSLGEQSSKAFSFTAASAGGFSFSSVSQGAPPVKDVSKFSFSSAGGGTG
KMMFGSSAGEEPFSFTPKSTSPALGANGSPTPLSSMSGEPVRPTSITPTLRVEPQAPKVV
GGETLGSFSGLRVGQGDEEKPSAATFSFGQPDNGGALGLGTGAAQFSFGSALQQGKLAEA
AFGEADSTLTDLSKAAFKPPEPAALSVTKPVFSTSAATSFSSLLAAPLSSPSTTLEKEHP
KTPTPPADPTPPLEPASSQPSPSVSPPIAEPEVTTSPESSVTPTPTIPEKAPTPPAPPTA
STTSFPPASITPPAQAAPNTSPEPVNESTPAPEASPPAITPTPVAPPLAYPAPSSDKPVS
IFTQPPAVIAVSTTIAVTSLTPVINTAAPASTTPTNSNSVFGQPAPASAAAGGFGSTGFG
APPATGAAAGFGKPVFGQTVGGFGQPAANVAGGFGFGQSAFGANPGFGQPAAASPAAVAS
TAASGGGLFGALSVSNASGFSFGTPSASTASSTGTGLFGQPSATPAFGQQSAGFGQGSVF
GSNTTTTSSTGFSFGQAAAFGSSSTTSVFGQQPSGGSVFGQQPSSGGGLFGSSSATVAGS
QQAGGGFFSGLGGKPSEDAANKNPFGTTAASGGFSQPNQTGGPTLFGNSGAKTFGFGSPA
STFGGGEQTASGTFSTGGGSVAAQGFGSFSTPAKQTGGFGSAPVFGSPPAFGGSPAFGGA
AAFGSAPSFSSPMGSSASKVFGEGTAAANVGGFGFASTQQSTPSFGALANQSAPSFGNLA
QQQQGSGFGAPQPSGFSAFGQQGGGFGSAGGFGSNQSSQMFGASSGWRS
NT seq
6090 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaagaccctgactctcctcccgaaagggaaatgaaggattttcagttccggcaa
atgaagaaaacccgtgtctttgattcacctgatgagctgccgaaggatagatcaagtctg
ctcgccatctccaacaaatttggactgacatttgtcggactagacagaaagatcaaggtg
tacctcacgggggacatcctagcttcagacaaagttgatggaaactccaatgaaatagtt
gaggggatagcagccttagctgatgttcatgtggagttgcctgtgcacaacctgggactc
agcagtgatgagctcaccctgtcagccagtggcatgtcagaagcatcaggcctgtcactg
gccttctacgacgtccgcaccttcatcaacaaggcccgaccgcagaagttgccatttgcg
actctgcaaccgagagccggcctgggcattattgtgcaggacctcaaatggaacccggtg
caggtttccatgctggccacctgtctgtctgacggcagcatgatggtgctggaggtcaca
gacagcgtcacagtgcaggcccagctacctgccacagagggcatcacctgtgtatgctgg
agtcccaaaggaaagcaagtagccgcaggaaaaatgaatgcaacagtcagtcagtatact
ccagggcttcaggagaagaaagtgatcccctgcccaagcttctacagctctgacaaccct
gtcaaagtgctggatgtgcagtggctgagtacgtttgtgtttgctgtggcatatgcagca
gccgacggctgtccggaaacacctcctgaactggtggtgatctccctccctacaaagaca
gagaagagggaggagaggtacctgaacttcaacgacccagtgtacggcacctgcactgag
agacagcatcactacttcctcagccacatagaggactgggatgttgttcttgccgcatca
gcagcctccattgaagtcagtgtcatcgccaagcaagaagataagaccaactgggagctg
tggttgctggaggacgccagcaggggagagctgcctgtctctcagaataacgacgacacg
ctgcctctggggctggccatcgactacaccagccagcaggagatccacatcaccgatgag
aagactttgcccccggcgcccactctgctgctgctgtctacagatggagttctgtgcccc
ttttcactgctcaacttcaaccctggggtcaagcaactggtcgctgcccccaccagcctg
gccctggacggagagagactgccccctgcaggatctgcagctcccctccccccttaccca
acctcctctctcccatcagccccggcggcattccctccgctccgccttcccttggccacc
acaccaaaccctcctccccctgcctcctcccctgcctctgtttcactgttcaccgcagcc
ccagctccagcctcctcatccggcttctcgttctccatgcccccctcctcttccactgct
ccccccgccttctttctggggggctctactgccttcagtgcgagcccagccttggccacc
tctggtagcttctccttctcctccaagcccctgacagagaccccagccgcagcttcggcc
ttctccgtcagtgcccccaaacttccagtgatggaaatggctccagttccggcccccact
ccaaagcccaccccccagcgcctggccaccgcctcccccatcacggtgctccgaggcacc
cccgagccaaccactcccgctgtgaagatgaacctcaatgacagattcctggcagtagaa
acccccgctgcagctccagcctcccagcccttctccttcaactccacacccaaagctgcc
ttctctgagcctagcagccatcccgctcctctgcccatagtcaccaagtctgcagccatg
ccaggcccagtccaaaccagtacaccccccacggttgtacagaaatctgccccagccacc
cagacaagtacacccactccacaggctgcgctgagtgtgaatgccctggaaaagcagctg
cagccgaggaaggactcagacccagtcatggctggaatactggaggagatcgcccacttc
cagaaggagttagatgacctgaaggcacgcagccacaaggcagacttcagagtgggcacc
acagaggagatgaaggagctgaggaaggagtctgaggacctccacatcttcaccctggag
atcaaagacaccactgagtctctccacggggacatcagcactctgaagaccaccatgctg
gagggctttgccggggcggaggacgcaaaggcccagagtgagctcaacagacaccggggc
tacctgcagctgctgtacaagaaaccactggacccacgcagtgaagaccaactcaaggag
attcgcaggctgtaccagtatgtaaagtttgctgtggaggatgtgaacgacgtgttggac
ctggagtgggagaaacatctggagaataagaagaaacagaaacacatgattgtcccagag
agggaggctctattcacagccttggccaacaacctggacatcatcaaccagcagaagcag
aggctggacacactggtcaaagacctccatgccctgcggctctacaacaagactgcagcc
tggagcactcctgcccccagccagcctgctgctaccacccccaccgaacagagtttggac
aacgagctggagagtttgagggatgcactcctgaaagccagtctggagaccattcccaag
accacttcgaaatctccagccaaaatgtctccgatgaagcagtctcagctgcgtaacttt
ctctccaagaggcagacaccaccagtccgctccaccgctccagccaacctgtcccgctcg
gccttcctctctcccaaatactacgcggacctggacgatgtgagctccacctcctccctg
tctcaggccctggacccagactactcccattattttgcggaggaagaaccagagcctgag
cctgcccccctccccatgctccccctctctatgccccgccaccccacggtggtacgcacc
ccctccatagccccggggtttggggccatccagtccactcccttcagtaaggtgcgccaa
ggactgggcctcagccccatcatgagcccagttccaaccaataagatcaacatgggaggt
gccgacagcacggcactagccactaagacggtgaagcacggagccccgcctactgagaag
gccacacccgtcccccttcctgcccaacaggctgctgctaaagccgctttcctcagacaa
atggccaatcagaaaccagcagtcagtggctctctgacagagtccaccctgaagactgtt
ccccaggtggtcaacgtacaggagctcaatgacaaaggaccgccaccgcctatctccact
gtgatcagctcctcagtcccagccccggtcggtcaggttgttcagcaagttttggctaca
gtggccaacaccaaccaggccaaacgaaattctactcaaggcatactgaaggtgtccgct
gagagtgtctgctcagcttccccccagggttttgtgtttggcggaccccctaaagctgac
gccccagtctccctgcccccctccagctcagccccatcactgggggagcagagcagcaaa
gccttctccttcaccgcagcgtctgccgggggcttcagtttctcctctgtgtcccaagga
gctccaccagtaaaggacgtgagtaaattctccttcagcagcgctggcggcggcacagga
aagatgatgttcggctcctctgccggggaggaacccttctccttcacccccaaatccacc
tcccccgccctgggggccaacggctcccccacccctctttccagcatgtcaggcgagcct
gtgaggcccacctccatcacccccaccctcagagtggagccccaggcccccaaggtggta
ggaggagagaccctggggagtttctcaggtctacgtgtgggccaaggggacgaagagaag
ccctcagcggccacgtttagctttgggcagccggacaacggaggggcgctagggttaggc
acgggggcagcccagtttagttttgggtcggccctccagcaagggaagctagccgaggct
gcatttggtgaggcggattctaccttgacagacttatccaaggctgcatttaagcctccc
gaaccagccgccctgtctgtcactaagcctgtgttctccacgtcagcagccacctccttc
agcagcctcctagcggcacccctctcttccccctcaaccaccctggagaaggagcacccc
aaaacccccacccccccggcagaccccactccacccctagagcctgcttcctcacagccc
agcccctccgtcagcccccctatcgctgagcctgaggttactacctcgccagagtcctca
gtcacccccacccctaccatccctgaaaaagccccaacgcccccagctccccccaccgcc
tcgaccacctctttcccccctgcctccatcaccccaccagcccaggcagccccaaacacc
agcccagagcctgtcaatgagtccacgcctgcccctgaggcctcaccacccgcaatcacc
cccaccccggtggccccaccactagcctacccggcccccagctcggacaaacctgtctcc
atcttcacccagccaccggccgtcatcgcagttagcacaactatagccgtcaccagtctc
accccggtcatcaacactgcagcccccgcctccaccacccctaccaactccaactccgta
tttgggcagcccgctccagcctcagcggctgccggcggctttggttccaccggcttcggt
gctccccctgctacaggcgcagcagctggcttcgggaagcccgtattcggacagacagta
ggcgggtttggccagcctgctgctaatgtagccggtggttttggttttggccagtctgca
tttggggccaaccccggatttggacagcccgcagcggcctcccctgctgcagttgccagt
accgctgctagtggaggtggtttgtttggagccctcagtgtcagcaatgcaagcggcttt
tcctttggcacccccagcgccagtacggccagcagtacaggcacaggcctgttcgggcag
ccgagcgccaccccggccttcgggcagcagagtgccgggtttggacaaggctctgtgttt
ggaagcaacaccaccactacatcctccactggtttcagctttggacaggctgcagctttc
ggaagctcctccactacctcagtgtttggtcaacagcccagtggtgggagtgtctttgga
cagcaaccatccagtggtgggggtctgtttggttctagctctgccacggtagcaggctcc
cagcaggcagggggaggcttcttcagtggcctgggggggaaacccagtgaggacgccgcc
aacaagaaccccttcggcacgaccgccgcctccgggggcttcagtcagcccaaccagaca
ggaggacccaccctgtttgggaacagcggggccaaaacctttggctttggctctccagca
tcaacattcggagggggggagcagacggccagtgggacctttagcacgggaggcgggagc
gtggctgctcaggggttcggctccttctccacccctgccaaacagacaggtggttttggg
agcgcccctgtgttcggtagcccccctgcttttgggggctccccggcttttgggggggca
gcagcgtttggctcggcaccctcttttagcagtcccatgggctcctcagccagcaaagtg
tttggagagggaacggcagccgccaacgtgggaggattcggctttgcctccactcaacaa
agtacaccgtcgtttggtgcactggccaaccagagtgccccatcgtttggtaacctggcc
cagcagcagcaggggtcagggttcggagctcctcagcccagcggcttctctgcgttcgga
cagcagggaggaggctttgggtctgctggtggctttgggtccaatcaatcttctcaaatg
tttggagccagttcgggttggagaagctag
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