Salmo salar (Atlantic salmon): 106565801
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Entry
106565801 CDS
T04363
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
106565801
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sasa03021
]
106565801
03036 Chromosome and associated proteins [BR:
sasa03036
]
106565801
Transcription machinery [BR:
sasa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
106565801
Coactivators
SAGA/TFTC/STAGA complex
106565801
Chromosome and associated proteins [BR:
sasa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
106565801
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
106565801
NCBI-ProteinID:
XP_013988822
UniProt:
A0A1S3LCY7
LinkDB
All DBs
Position
ssa12:69405354..69417847
Genome browser
AA seq
1042 aa
AA seq
DB search
MIANTRHTTCTIESIFSPLAVVVQCCFSPYILRNVSQEPFVPPFITGKRPITALWNLCGV
TLHVVCACARHFRCSIACSSVKMAAGSDLLDEVFFNAEVDEKVVRDLVGSLESELSGHES
PEASSQTVAKHMASSGTGFNANVQQNKRGLAQEVAKAGAGVQGGVIISNTRSQGSAMDAS
SSESDSSAGHGQGKTVAVSASIITPLPNHGGKVSSSATQTLNGGSLLNCHNSGSAVSLSG
TPLSSSCTSSGNASVAVTVVNNGPGLSKGHASAVMPPSLNTTIIQASFVNSQNVVTSSHA
ASLGTGPAISHIVRPSMQTAGSGTAMNGPNAGLPFDCLNNGQSPTSVAVSSGSHIIMAEA
PKTIIQTAPGAVTNPSFQSAPRASTPVTVAASPGGSRSIAQQVLAPRHPQTSPNQPNVQN
IQLPPGMVLVRSESGQLLMIHQQTLAQMQSQSQSQGVMAPRPATPTSTPPFQITSVQAPG
TPILTRQVTPTTIIKQGSPVPTSAPVTTTLQKPPVTTTLQRPPVLQSPMIVVGAAAGTSM
GTALPGATQRTVTASPGTTVTFATETMENVKKCKNFLSTLIKLASSGKQSSETAANVKDL
VKDLLEGKIEVEDFTNRLYRELNSSPQPYLVPFLKRSLPALRQLTPDSAAFIQHSGLQQQ
APATTPTTVVLDSPALRPAAQTIRPHLQPVISKQGQTTPMVLQPQQQGAMVRPLQMTPMV
TLRGPPPHSRIMLGQPQVQLKQLQTVPVVKPGVLTGSKSSPGAASLATAVQKNKLKEAGG
TFRSAMDDDDINDVASMAGVNLSEESARILATNSELVGVVTRSCKDEAFLHTSTLTRRIL
EIGKKFGVSDLGPEVVNYVSHASQTRLQNLLEKVSEVAQQRNINFKEDSRYEQTSDMRAQ
IKFFEQLDQMEKQRKEEQEREILMKAAKSRSRQEDPEQLRLKQKAKEMQQQELFQLRQKE
ANLTALAAIGPRKKRKMEAAAAAAGAEGSGSSPSASGSGSSGASRQFIRQRITRVNLRDL
LFCLENERDTSHSHLLYKGFLK
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgatcgcaaatacgcgtcatacaacatgtactatcgagtcgattttctccccactagct
gttgttgttcagtgttgtttcagcccttacatccttcgtaatgtcagtcaggagccattt
gtcccgccctttatcaccgggaaacgaccaatcacagcactttggaatctctgtggggtg
acgttgcatgtagtctgcgcatgcgcgcgtcactttcgatgctccatagcttgcagcagt
gtgaagatggcggcaggctccgatttgctagatgaggttttctttaacgctgaggtggac
gagaaagtagttcgtgatcttgtggggtctcttgagtccgagctttcgggtcacgagagc
cctgaggcaagtagccagacagtcgctaaacacatggccagttccgggacagggtttaat
gctaatgtccagcagaacaaacggggacttgctcaagaggttgcaaaagcaggggctgga
gtgcaagggggtgtcattattagtaatacgaggtcccagggttcagctatggatgcctca
tcgagtgagtcggactcatcggcaggacacggccaaggaaagactgttgctgtcagtgcc
agtataataactcctctcccaaaccacggggggaaagtatcctcttccgcaactcaaacg
ttgaatggaggcagtttattgaactgtcacaattcaggaagcgctgtctctctcagtggg
acaccgctgtcaagtagttgcacgagtagcggcaatgcctcggtagctgtcacagttgtc
aacaacgggccggggttgtcaaaaggacatgcgagtgcagtaatgccaccttcattgaac
accactatcatccaggcatcattcgtgaactctcagaatgttgtcacctcgtctcacgct
gcgagtctgggcactggacctgctatatcacatattgtgaggccatctatgcaaactgcg
ggatcgggtacagcgatgaatggtcctaatgcgggattgcctttcgattgcctgaacaat
ggtcagtcgcccacttctgtggctgtcagttcggggtcgcacatcatcatggcagaggcg
cccaaaacaatcatacagactgctcctggtgctgtaacgaacccgtcgttccagagcgca
ccgagggcttccactccggtgacagtagctgcgagcccgggagggagccgttctatcgcg
caacaggtgttggcgcctcggcacccccagacatctccgaaccagcccaacgttcagaac
atccagcttcccccaggtatggtcctggtgcgcagtgagagtgggcagctgttgatgatc
caccagcagaccctggctcagatgcagtcccagtcccaatcccagggagtcatggccccc
cgcccagccacccccaccagcactcctcctttccagatcacctcagtccaggctcctgga
acgcccatcctcactaggcaggtgactcccaccactatcatcaagcagggctcgcctgtg
ccaacctctgcacctgtcaccaccaccctccagaagcctcctgtcaccaccacactccag
aggcctcctgtcctacagagtcccatgattgtggtaggggctgctgcaggcacttctatg
gggacagcgctaccaggggccacccagaggaccgtcaccgcatcacccgggaccactgtc
acctttgcaacggagacgatggagaatgtgaagaaatgcaagaacttcctgtctacatta
atcaagctggcgtccagcgggaagcagtcctcagagactgccgccaacgttaaagacctg
gtcaaagatctcctggaagggaagattgaagtcgaggacttcaccaacaggttatacaga
gagctcaactcctcacctcagccttacctcgtgcctttcctcaagaggagccttcctgcc
ctgcggcagctcaccccagactcggcagccttcatccagcacagtgggctccagcagcag
gcccctgccaccacccccaccacggtggtactggacagcccagccctgcgccctgcagcc
caaaccatcagaccacacctccagcctgtcatcagcaaacaggggcagactaccccaatg
gtgctccagcctcagcagcagggggcaatggtaaggcctcttcagatgacccccatggtg
accctcagaggtccgcccccccacagtcgcatcatgctgggacagccacaggtgcagctc
aaacagctacagacagtccctgtggtgaagcctggagtgttgactggatctaagtcgtct
cctggtgctgcctctctggccactgcagttcagaagaacaagctgaaggaagctgggggc
acgttcaggtcagctatggatgatgatgacatcaatgatgtggcatctatggctggggtt
aacctgtctgaggagagtgcccgtatcctggcaaccaactccgagctggtgggagtggtg
acacggtcctgtaaggacgaggccttcctccatacctccacactgaccagaagaatactg
gaaataggtaagaagtttggtgtgagtgatctggggccggaggtagtgaactacgtgtcc
cacgcctcccagaccaggctgcagaacctgttggagaaagtctctgaggtggcccagcag
aggaacatcaacttcaaggaggacagtcggtacgagcagacgagcgacatgcgtgcccag
atcaagttctttgagcagctggatcagatggagaaacagaggaaagaggagcaggagaga
gagattctgatgaaggcagcaaagtctcgttctcgtcaagaagaccctgagcagctgcgg
ttgaaacagaaggccaaagagatgcagcagcaggagctgtttcagttgagacagaaggaa
gctaacctgacggcgctggcagccatcggccccaggaagaagaggaaaatggaggctgca
gccgctgcagctggagctgagggctcagggtccagtccctctgcgtctggtagtggtagt
tcaggagcatccagacagtttatccgccagcgcatcacgcgtgtcaacctcagggacctg
ctcttctgtttggagaatgagagagacaccagtcactcccatctcctctacaaaggcttc
ctcaaatag
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