Salmo salar (Atlantic salmon): 106565830
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Entry
106565830 CDS
T04363
Symbol
tmf1
Name
(RefSeq) TATA element modulatory factor 1
KO
K20286
TATA element modulatory factor
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sasa04131
]
106565830 (tmf1)
Membrane trafficking [BR:
sasa04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
106565830 (tmf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMF_TATA_bd
TMF_DNA_bd
ATG16
Motif
Other DBs
NCBI-GeneID:
106565830
NCBI-ProteinID:
XP_013988874
UniProt:
A0A1S3LEE4
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All DBs
Position
ssa12:complement(68396503..68406281)
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AA seq
1170 aa
AA seq
DB search
MSWFSSTQLSSFAKQALTTAQKSIDRVLDIKEDEWGDTVVMPYDDLPGKTPLSGGWGMTQ
WDSPPEECTTTLPPSSEAITTPVTRMVVDETENFFSAFLPSGELQSVMDTQVVSVPPTKS
HRRPQEKDEEDKDTVVKDDVDPHKTGLTETNRLEDQEATENQAVLTESSSLWSSSEIVLV
QTPDPPVLAQGDSPDDTDSPLISESWIESTVDDTTAVSEDAQTERPFTPSETQPDFDDHI
SEPAVNTELEPPFNPSPPTPPREILLEAKDPKAGDRQSDTPSPKSEDRQSNTPSPPVSAF
SSGTSTTSDIEVLDHESVQSESSASSRQEIAEAKAGLHLMQGSFQLLSASACGDFPRLED
YPKLTESCGSSSDAFERIDSFSMQSLDSRSVSEVNSDDDIPGSRTLASVTAGPTPSPPVR
VATTAQVREEEEKQQQQEEEEDEEGLTETMKDQSLDENEMEESGRSATPVNSEQPEDLIE
QESEADVTLSGPTPDHEEQLPPPITEEKRGVSTCQILELQKVIDELSSRLEKRELQLLSV
SKDKARLEEECDNLKDEVIGLKEESSSVQSLKEEFTQRIADTERKAQLACKERDIAKKEI
KGMREELSTRLNSNETMEIIREKEEQIRELLEEGEKLSKQQLQHSNIIKKLRVKEKESET
KITKQNKKLKEQEEELKHLQQVLDEKEEVEKQHRDNIKKLNVVVERQEKDMTKLQSDSEE
LLENNRSLQAALDNSYKEMAALHKAKASHASEAQEAALSRETQAKEELVLALVKAQEEAR
MQQDALVNQVADLRLALQRAEQQQARKEDYLREEISDLQQRLQGAETRNQELSQSVTSAT
RPLLRQIENLQASLGGQTASWEKLEKSISDRLVEAQAQLAVAVEKERAATEELMAIKAQL
ASLESQNSLLRQEKGRLHGQLDAEKTRREKLEDDSSREHVELENLRGAHTRTQEEAKKEK
LLLTNQLEMEKMKVEQEKKKCYLAQEALKEKERKVLVHSVGEPPASSTPSLSRSSSISGV
DHAGLHSSFSQEDSLGHSLGTMTMSMSGTNLYEAARLSGGSSIIENLQSQLKLREGEIAQ
LQLEIASLERTRSSMAEEMVRLTNQNEEMEDSVKEIPTLKVQLQELEQRHNTILQMYGEK
AEEAEELRLDLEDVKNMFKTQIDELLKNQK
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgagttggttcagttctacccaactgtcaagctttgccaaacaagctttgacaacggct
cagaagtccatcgaccgagtgctggacattaaagaagacgaatggggtgacacagtggta
atgccttatgacgatctaccagggaagactccattgagcggtggatgggggatgacacaa
tgggactctcccccggaggaatgcaccacaactctccccccatcatctgaggccatcacg
actcctgtcacccgcatggttgtggatgaaacagagaacttcttcagtgcttttctgccc
tcaggagagctccagagtgtcatggacacccaggttgtctctgtgccgcccaccaagtcc
cacaggcggccacaggagaaggatgaggaggacaaggatactgtggttaaggacgacgtg
gaccctcacaagacaggcctgacagagaccaacagactggaagaccaggaagctactgag
aaccaggctgtcctgactgagtcctcaagtctatggtcttcctctgaaattgtcctcgtt
cagacaccagaccctccagtcctggctcagggtgattctcctgatgacactgacagtcca
ctaatcagtgagagctggatagaatcaactgtggatgatacaactgctgtttctgaggat
gcacaaaccgaacgaccatttactccctcagaaacccaacctgattttgatgatcacatc
tctgaacccgccgtcaacactgaactggagccccccttcaatccatctcctcccacaccc
cctagggaaatcttattggaggccaaagaccccaaagcgggggacaggcagagtgacaca
ccctcccctaaatcggaggacagacagagcaacaccccctcccctcctgtcagtgccttc
tcctcaggcacctccaccaccagtgatattgaggttttggaccatgagagtgtacagagc
gagagttcagccagttccaggcaggagatagcagaggccaaagcaggcctccacctgatg
cagggctccttccagcttctctcagcctctgcctgtggggacttcccccgcttggaggac
taccccaagctgactgagagctgtggatcctcctcagatgcctttgagcgcattgactcg
ttcagcatgcagtccctggacagccgcagtgtcagcgaagtcaactctgatgatgacatc
ccagggagccggacgctggcatctgtcaccgcagggcccacgccttcgccgcctgtcaga
gtggcaaccactgcacaggtacgggaagaagaagagaagcagcagcagcaggaggaggaa
gaagacgaggaggggctaacagaaacaatgaaggatcagtctctggatgagaatgagatg
gaggagagtggtcgcagtgccacgcctgttaacagcgagcagcctgaggacctaatagaa
caggaatcagaggcggacgtcacgctgtcaggtcccacccctgaccatgaggaacagttg
cccccaccaataacggaagagaaaagaggagtgtcaacatgtcagattctggagcttcaa
aaggtaattgatgagctgtcaagccgccttgagaagagggagttacagctgctgtcagtc
agcaaagacaaggccaggctggaggaggagtgtgacaaccttaaagatgaggtgattggt
cttaaggaggagagttccagtgtgcagtctctgaaggaggagtttacccagcgcatcgca
gacacagagaggaaagcccagctagcgtgcaaggagagggatattgccaagaaggagata
aaggggatgagggaagagctgtccaccagactcaactccaacgagactatggagatcatc
agagaaaaggaggagcagatccgcgaactgctggaggagggtgagaagctgtccaagcag
cagctgcagcactccaacatcatcaagaagctgcgtgtgaaggagaaggagagcgagacc
aaaatcaccaaacagaacaagaagctgaaagagcaggaggaagagctcaaacacctacag
caggttctggatgagaaggaggaagtggagaagcagcacagggacaacattaagaagctg
aacgtggtggtggagcgccaggagaaggacatgaccaaactccagagtgactcagaggag
ctcctggaaaacaacaggagcctgcaggctgccctcgacaactcctacaaggaaatggct
gcactgcacaaagccaaggctagccatgccagcgaggcccaggaggctgctttgagcagg
gagacccaggccaaggaggagctggttctggccctggtgaaggcccaggaggaggcccgc
atgcagcaggatgctctggtcaaccaggtggctgatctgcggctggctctgcagagggct
gaacagcagcaggccaggaaagaagactacctgagagaggagatcagtgacctgcagcag
agactgcagggggcggagaccaggaaccaagagctgagtcagagtgttacctctgcaacg
cggccgctgctcagacagatcgagaacctgcaggcctcgctggggggccagacagcatca
tgggagaaactggagaagagcatctcagatcgactagtggaagcacaggcccaactggct
gttgctgtggaaaaggagcgtgcagcaactgaggagctgatggccattaaggcccagctg
gcctcactggagtcccagaattccctgcttcgacaagagaaagggcgtctccacggtcag
ctggacgcagagaagaccaggcgggagaaactggaggatgacagcagcagggagcatgtg
gagctggagaatctgaggggagcgcacactcgaacacaggaggaggccaagaaggagaag
ctcctcctgaccaatcagctggagatggagaaaatgaaggtggagcaagagaagaagaaa
tgctacctagcacaagaggccctgaaggaaaaggagcggaaggtattggttcactctgtg
ggtgagcccccagcctcatccaccccctccctgtcccgttccagctccatcagtggggta
gaccacgccggcctgcactcctccttctcccaggaggactctctgggtcactcgttgggg
acgatgacaatgtctatgagtgggaccaacctgtatgaggcggctcggctcagtggaggc
tccagcatcatagagaacctgcagtcccagctcaaactccgagagggagagatagcacag
ctacagctggagatcgctagtctggagaggactcgctcatccatggcggaggagatggtc
agattgaccaatcagaatgaggagatggaggacagtgtgaaggagatccccacactgaaa
gtacaacttcaggagctggagcagagacacaacaccatcctccagatgtatggagagaag
gctgaggaggcagaggagctgagactcgacctggaggacgtcaagaacatgttcaaaacc
cagattgacgaactgctcaagaaccagaagtag
DBGET
integrated database retrieval system
