Salmo salar (Atlantic salmon): 106566108
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Entry
106566108 CDS
T04363
Name
(RefSeq) ATP-dependent RNA helicase DDX19A-like
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03013
Nucleocytoplasmic transport
sasa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106566108
03015 mRNA surveillance pathway
106566108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106566108
Enzymes [BR:
sasa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106566108
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
106566108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HNF-1_N
Motif
Other DBs
NCBI-GeneID:
106566108
NCBI-ProteinID:
XP_013989434
UniProt:
A0A1S3LFX6
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Position
ssa12:81679133..81687668
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AA seq
504 aa
AA seq
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MSTDSWAQAVDEQEAAAESIGSLQIKDKPEENGTANTALAATTTTTTTTTTNTAAASATT
PAKTGGGEGDKTGEEDDKDDKAAQSLLNKLIRSNLVNTTNQVEVLQRDPNSPLYSVKSFE
ELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSH
VDPNNKFPQALCVSPTYELALQTGKVIEQMGKHYSEVKLVYAIRGNKLQRGTQLQEQVVI
GTPGTMLDWCLKFKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPKQCQMLLFSA
TFEETVWNFAQRIVPDPNIIKLKREEETLDTIKQYYVLCNSKEEKFMALCNIYGAITIAQ
AMIFCHTRKTAGWLAGELSREGHQVALLSGEMQVEQRAAVIDRFRDGKEKVLVTTNVCAR
GIDVEQVSVVINFDLPVDRDGNPDNETYLHRIGRTGRFGKRGLAINMVDSRFSMNVLNKI
QDHFNKKIEKLDTDDLDEIEKIAG
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacggactcctgggcccaggctgtggacgagcaggaggccgccgccgaatcgatt
ggtagcctacaaatcaaagacaagccagaggaaaatggtactgccaacactgcattggcg
gcgacgacaacaacaacaactactactacgacaaacacagcagcagccagcgccacaacg
cctgcaaagacaggaggaggagagggagacaaaacaggagaggaggacgataaagatgac
aaggcggcacagtcgttattgaataagttgatacgcagtaatctagtgaacacaaccaat
caagtagaagttctacagagggatcccaactctccgctttactctgtcaaatccttcgag
gaactacggcttaaacctcagctgctccagggagtgtacgccatgggcttcaaccgaccc
tccaaaatccaagagaacgcattacccatgatgctcgctgaacccccacagaacctgata
gcccagtctcagtcagggaccgggaagactgctgcctttgtcctggccatgctcagtcat
gttgatcccaacaacaagttcccacaggctctctgtgtgtctcctacctatgagctggcc
ctgcagacggggaaggtcattgagcagatggggaagcactactcagaggtcaaactagtc
tacgccatcagaggaaacaaactgcagagaggtactcagctccaggagcaggtggtgata
gggacgccaggcaccatgctggactggtgtctgaagttcaagttcatcgaccccaagaag
atcaaagtctttgtcctggacgaagctgacgtcatgatcgctacacagggtcatcaggac
cagagtatacgcattcagaggatgttacccaaacagtgccagatgctgctgttctcggcc
acgtttgaggagacggtgtggaactttgcccagcgcatcgtcccagaccccaacatcatc
aagctgaaacgggaggaagagacgctggacaccatcaagcagtactacgtcctctgtaac
agcaaagaggagaagttcatggctctctgcaacatctacggggccatcaccattgctcag
gccatgatcttctgtcataccaggaaaacggcggggtggttggcaggtgagctgtcccgg
gagggccaccaggtggcgctgctcagtggggagatgcaggtggagcagagagctgctgtc
atcgaccgcttccgagacggaaaggagaaggtcctggtcaccaccaacgtctgtgccaga
ggtattgacgtggagcaggtttccgtggtgataaactttgacctgccggtggacagagac
ggtaacccggacaacgagacgtacctgcatcggattggccgcacgggtcgttttgggaag
cggggattggccatcaacatggtggacagcaggttcagcatgaacgtcctaaacaagatc
caggatcacttcaataagaagatcgagaagctggacacagatgatctggatgagatagag
aaaatcgcaggctga
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