Salmo salar (Atlantic salmon): 106566180 Help Entry 106566180         CDS       T04363                                  Name (RefSeq) collagen alpha-1(II) chain-like   KO K19719   collagen type II alpha Organism sasa  Salmo salar (Atlantic salmon) Pathway sasa04510   Focal adhesion sasa04512   ECM-receptor interaction Brite KEGG Orthology (KO) [BR:sasa00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     106566180  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     106566180  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:sasa00536]     106566180 Glycosaminoglycan binding proteins [BR:sasa00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    106566180 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI VWC Motif Other DBs NCBI-GeneID:  106566180 NCBI-ProteinID:  XP_013989529 UniProt:  A0A1S3LG75 LinkDB All DBs Position ssa12:84293497..84386605 Genome browser AA seq 1349 aa AA seqDB search MFSFVDSRTVLLLVATQVILLAVVKCQDEDQDPGSCMQDGQSYSDKDVWKPEPCRICVCD TGTVLCDEIICEEIKDCPKPEIPFGECCPICVRDGEAPPSGAPGAKGQKGEPGDITDVVG PRGPGGPLGPPGEQGPRGDRGDKGDKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGG NFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEAGEPGSAG PLGPRGPPGPSGKPGDDGEAGKPGKGGERGPSGPQGTRGFPGTPGLPGIKGHRGYPGLDG LKGEGGAAGSKGESGAPGENGAPGPMGPRGLPGERGRPGPSGSAGARGNDGLSGPAGPPG PVGPAGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGASGNPGTDGIGG SKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGELGPAG PQGALGPAGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGVGG VSGPKGAGGDPGRPGEPGLPGARGLTGRPGDTGPQGKVGPGGAAGEDGRPGPPGPMGARG QPGVMGFPGPKGANVSVTGAIGPGGASGAQGPPGLQGMPGERGASGIPGPKGDRGDNGEK GPEGASGKDGSRGLTGPIGPPGPAGPNGEKGESGPSGPSGAAGARGAPGDRGETGPPGPA GFAGPPGSDGQPGAKGEQGEGGQKGDAGAPGPQGPSGAPGPSGPTGVSGPKGARGAQGPP GATGFPGAAGRVGPPGPNGNPGAAGPSGPAGKDGPKGVRGDGGPPGRQGDAGLRGAAGAP GEKGDAGEDGPSGPDGPSGPSGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGS GDRGPPGPVGPPGLTGPAGETGREGNAGSDGPPGRDGSTGIKGDRGNTGPAGAPGSPGAN GSPGPVGPTGKQGDRGEAGAQGPAGPSGPAGARGMAGPQGPRGDKGEAGEGGERGQKGHR GFTGLQGLPGPPGQSGDQGASGPAGPSGSRVRFYLSVCVSQGPPGNSGPPGPPGPPGPGI DMSAFAGLSQPEKSPDPLRYMRADQASGNLRTHDAEVDATLKSLNNQIENIRSPEGSKKN PARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVYCNMETGESCVYPKPASIPKKNWWS SKSKAAKHVWFGETMNGGFHFSYGDDSLAANTASVQMTFLRLLSTEASQNLTYHCKNSVA YMDGATGNLKKAVLLQGSNDVEIRAEGNSRFTYAVMEDGCTKHKGTWGKTVIEYRSQKTS RLPIVDIAPVDIGGADQEFGVDVGAVCFL NT seq 4050 nt NT seq  +upstreamnt  +downstreamnt atgtttagctttgtggattcgaggactgtactgctacttgtagcaacccaagtcattcta ttagccgttgtcaaatgtcaggacgaagaccaggacccaggcagctgtatgcaggacgga cagagctatagtgacaaggacgtatggaaaccagagccgtgtcgtatttgtgtgtgcgac acgggaactgtcctgtgtgatgaaataatctgcgaggagattaaagactgccccaaaccc gagatcccattcggagagtgttgccccatctgcgtgcgggacggggaagctcccccaagt ggggcccccggagctaagggtcagaaaggggaaccaggagatatcacagatgtcgtagga ccaagaggacctggaggccctttgggccccccaggagagcagggaccacgtggagacaga ggagacaaaggcgataagggcagccccgggccccgtggcagagatggcgagcctgggacc cccggtaaccccggccctcctggacctccaggacctaacggaccccccggccttggagga aactttgctgctcagatggcgggaggattcgacgagaaggctggcggagcacagatgggc gtgatgcaaggaccaatggggcctatgggtcctcgaggaccacctggcccttctggagct cctggcccacaaggtttccaaggcaaccccggagaggctggagagcccggatcagctggc ccgttgggtccccgtggtccacccggaccctctggtaaacctggagatgatggtgaggct ggcaaacctggcaaaggtggtgaacgtgggccttctggtcctcagggaactcgtggattc ccaggaactcccggtctgcctggaatcaaggggcacagaggctatccaggtcttgatgga ctcaagggagagggtggagctgctggttctaagggtgagtctggtgctcccggtgagaat ggcgctcctggaccaatgggaccacgtggtctgcccggtgagagaggtcgtcccggaccc tctggttctgctggcgctcgtggtaatgacggtctgtctggccctgctggtcctcccggc ccagttggtcctgctggtgctccaggcttccccggctctccaggttctaagggagaagct ggccccaccggtgctcgtggacctgagggcgctcagggaccccgtggagagtcaggaacc cctggatctcccggacccgccggtgcatctggtaaccctggtactgatggtattggtgga tctaaaggatcagctggtgctcctggtatcgctggcgcgcctggcttccccgggccccgt ggccctccaggaccccagggagccactggacctctcggaccaaagggaacatctggtgac cccggtatcccaggtttcaagggtgaggctggacccaagggagagcttggaccagccggt ccccaaggagcacttggccctgcaggagaggaagggaagaggggacccagaggagagccc ggcgctgctggacctcttggacctcccggagagagaggcgcccccggtaaccgtggtttc ccaggtcaggatggcctggctggtcccaagggagcccctggcgagcgtggagtcggcggc gtgtctggccctaagggagccggcggtgaccctggacgccctggcgagcccggtcttcct ggcgcaagaggtcttactggtcgtcctggcgatactggtcctcaaggcaaagttggacct ggtggtgctgctggtgaggatggtcgccccggaccccctggccctatgggagcgcgcggt cagcctggtgtgatgggattccccggacccaagggagccaacgtgagtgtcactggagcg atcggaccaggtggtgcatcgggtgcccagggaccccccggtctgcagggtatgcccgga gagagaggagcctcgggcatccccggacctaagggagacagaggtgacaacggagagaag ggacctgagggtgcttctggcaaagacggctcaagaggtttgactggtcccattggtcct cccggcccagctggtcccaacggagagaagggtgaatctggtccatctggaccttccggt gctgccggtgcccgtggtgctcctggagacaggggtgagaccggacctcctgggcctgct ggcttcgctgggcctcctggatctgatggtcagcccggagccaagggagagcagggagag ggcggccagaagggagacgctggtgctcctggaccccagggaccctctggagctcctgga ccttccggacctactggcgtttctggacctaaaggtgctcgcggtgctcagggaccccct ggtgccactggtttcccgggtgctgccggcagagtcggaccccctggtcccaacggtaac cctggtgctgctggtccttctggccctgctggtaaagatggtcctaagggtgtgcgtgga gacggtggacccccaggcaggcagggagacgctgggctgcgtggagccgctggagcccct ggagagaaaggagatgctggagaggatggtccctctggtcccgatggtccttcaggtcct tcaggtctggctggacagcgtggtattgttggtcttccaggacagcgtggagagagaggt ttccctggcttgcccggaccctctggagagcctggtaaacaaggagctcctggtggaagc ggagaccgtggaccccctggcccagtgggaccccctggactgactggacccgctggagag accggtagagagggcaacgctggttctgatggaccacccggtagagatggatccactgga atcaagggtgaccgtggtaacaccggtcctgctggtgctcctggctccccaggagctaat ggttcccccggccctgtcggccccaccggcaagcaaggagacaggggagaggctggagct caaggaccggctgggccttccgggcctgctggagccagaggaatggctggaccccaagga ccccgtggagacaagggtgaggctggagagggtggcgagagaggacagaagggacacaga ggattcactggtctgcagggtctgcccggacctcccggtcaatctggagaccagggtgcc tctggacctgccggaccaagtggatcaagagtgagattctatctttctgtctgtgtatct cagggtccacctggaaactctggaccccctggtcctcctggtcctcccggccctggtatc gacatgtctgccttcgctggtttgtctcagcctgagaagtcccccgatcccctgaggtac atgagggccgaccaggcctccggaaacctgaggacgcacgacgccgaggtggacgccacg ctcaagtccctcaacaaccagatcgagaacatccgctcccccgagggctccaagaagaac cctgcacgtacttgcagagacctgaagctgtgccaccccgactggaagagcggagagtac tggatcgaccctaaccagggctgcaccatagacgccatcaaggtctactgtaacatggag actggagagtcctgcgtctaccccaagcctgccagcatccccaagaagaactggtggtcc agcaagagcaaggctgccaaacacgtctggttcggagagaccatgaacggaggattccac ttcagctatggtgatgacagtctggcagccaacactgccagcgtccagatgaccttcctg cggctgctgtccaccgaggctagccagaacctcacctaccactgcaagaacagcgtggcc tacatggacggggccacgggaaacctgaagaaggccgtgctgctccagggctccaacgac gtggagataagagctgagggcaacagccgctttacatacgccgttatggaggacggctgc acgaaacataaaggaacgtggggaaagacagtgattgagtacagatcacagaagaccagc cggctgcccatcgtggacattgctcctgtggatattggaggagcggaccaggagtttggt gttgacgtcggcgcagtttgcttcttgtaa

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