Salmo salar (Atlantic salmon): 106566709 Help Entry 106566709         CDS       T04363                                  Name (RefSeq) collagen alpha-1(II) chain-like   KO K19719   collagen type II alpha Organism sasa  Salmo salar (Atlantic salmon) Pathway sasa04510   Focal adhesion sasa04512   ECM-receptor interaction Brite KEGG Orthology (KO) [BR:sasa00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     106566709  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     106566709  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:sasa00536]     106566709 Glycosaminoglycan binding proteins [BR:sasa00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    106566709 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI Motif Other DBs NCBI-GeneID:  106566709 NCBI-ProteinID:  XP_013990493 UniProt:  A0A1S3LHS3 LinkDB All DBs Position ssa13:21505732..21531640 Genome browser AA seq 1420 aa AA seqDB search MFSFVDSRTVLLLVASQVVLLSIVRCQEEDDHVAIGAKGQKGEPGEIADVVGANGPAGPM GPSGEQGPRGSAGAKGDKGNVGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGGNFAAQMAG GFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGETGEPGPAGPLGPHGPP GPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKGEGGAA GAKGEGGAPGENGASGPMGPRGLPGERGRPGPSGTAGARGNDGLPGPAGPPGPVGPAGAP GFPGSPGAKGEAGPTGARGTEGAQGPRGEAGTPGSPGPAGASGNPGTDGIPGAKGSAGAS GIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGELGPAGPQGALGPA GEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGSKGAPGDRGVPGVGGPKGGT GDPGRTGEPGLPGARGLTGRPGDAGPQGKVGPGGAAGEDGRPGPPGPQGARGQPGVMGFP GPKGANGEPGKAGEKGLVGRQGLIGLAGKDGETGAAGPLGPPGPAGERGEQGAAGPSGFQ GLPGPAGPPGEGGKPGDAGVPGEAGAAGATGPRGERGFPGERGGGGPQGLQGPRGLPGTP GSDGPKGAIGPAGGAGAQGPPGLQGMPGERGAGGISGAKGDRGDNGEKGPEGASGKDGSR GLTGPIGPPGPAGPNGIKGEGGPSGPTGAAGARGAPGDRGEGGPPGPAGFAGPPGADGQP GAKGELGEAGQKGDGGAHGPQGPSGAPGPVGPTGVSGPKGARGAQGASGATGFPGAAGRV GSPGPNGNPGAAGPAGPAGKDGPKGVRGDAGTPGRQGDAGLRGVAGAPGEKGDAGGDGLP GPDGPSGPQGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGAGGDRGPPGPVGPP GLSGPSGEPGREGNAGSDGPPGRDGSTGVKGERGNTGPAGAPGAPGAPGAPGPVGPLGKQ GDRGEGGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFTGLQGLPGPP GSAGDQGAAGPAGPSGAKGPPGPVGPAGKDGSNGQPGPLGPPGPRGRSGETGSAGPPGNP GPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADEASSSLRQHDVEVDSTLKSLNNQ IENLRSPDGSQKNPARTCRDLRLCHPEWKSGDYWVDPNIGSTADAIKVFCNMETGETCVY PSIANVPQKNWWTSKSKDRKHVWFGETMNGGFHFSYAEDGTNAASIQLTFLRLLSTEASQ NLTYHCKNSVAYMDASTSNLKKGLLLQGSNDVEIRAEGNSRFTYSVVEDGCKKHTGQWGK TVFEYKTQKTSRLPIVDIAPMDIGGADQEFGLDVGAVCFL NT seq 4263 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttgtggattcacggactgttctgctacttgtagcatcccaagttgtttta ctatccattgtcagatgtcaggaagaggatgaccacgtggcgattggtgctaagggccag aagggggaacccggcgagattgcagatgttgtaggagcaaatggaccagcaggccctatg ggcccctcaggcgagcagggacctcgtggatcagccggagctaagggtgataagggaaat gttggccccagaggcagagatggcgagcctggcacccccgggaaccccggaccccctggc ccacccggacctaacggacctccaggccttggtgggaactttgctgctcagatggctggt ggattcgacgagaaagctggaggtgcacagatgggagtgatgcaaggacctatgggccct atgggtccccgtggtccacctggcccttctggagcccctggcccacaaggtttccaaggt aaccccggagagactggagagccaggcccagctggcccactgggaccacacggaccaccc ggaccttctggcaaaccaggaagtgatggtgaggctggcaaacctggaaaggctggtgag cgtggacctgcaggacctcagggagctcgtggattccccggaactcctggtcttcctgga atcaaaggacacaggggtcatcctggtctggatggagctaagggagaaggcggtgctgct ggagccaagggtgagggtggtgctcccggagagaacggtgcgtctggaccaatgggacca cgtggtctgcctggcgagaggggccgtcccggaccttctggaactgctggtgcccgaggt aatgatggcttgcctggccctgctggtcctcccgggcccgttgggcctgctggagcaccc ggtttccctggatccccaggagccaagggagaagctggccccactggtgcacgtggaact gagggtgcacaggggccccgtggagaggctggtacacccggatctcctggacctgctggt gcctctggcaaccctggtactgatggtatccctggagctaaaggatctgctggagcttct ggaattgctggtgcacctggttttcccggaccccgtggcccccccggacctcagggagca acaggacctcttggacccaagggacagtctggagaccccggtattcctggcttcaaagga gaggctggtcccaagggagagcttggccctgctggtccccaaggcgcccttggccccgct ggcgaggagggcaagagaggagcaagaggagagcccggtgctgctggaccacttggacct cctggcgagagaggagctcctggtaaccgtggtttcccaggtcaggatggtcttgctggt tctaagggagcccctggtgaccgtggtgttcccggcgtgggtgggcctaagggaggcact ggtgaccccggccgcacaggagagcctggtcttcctggagccagaggtcttactggtcgc cctggagatgctggtcctcaaggcaaagttggtcctggtggtgctgctggtgaggacggt cgccccggcccacctggtcctcagggagcccgtggccaacctggtgtgatgggattccct ggaccaaagggagccaatggtgagcctggcaaggcaggagagaagggtcttgtgggtcgt caaggtctgataggtctggctggtaaagatggtgagactggtgctgctggacctctcggc cctcctggacctgctggagagagaggagagcaaggagctgctggaccttcaggcttccag ggtctgcccggacctgctggccccccaggagagggaggcaagcctggtgatgcgggtgtt cctggagaggctggtgctgctggtgccactggacctagaggcgagcgtggtttccctggt gagagaggcggtggtggacctcagggtctgcagggacctcgtggacttcctggaactccc ggaagtgatggaccgaagggagccattgggccagctggtggtgctggagctcagggaccc ccaggtctgcagggtatgccaggagagaggggagctggtggaatctccggcgccaagggt gacagaggtgacaatggagagaaaggacctgagggcgcttctggaaaagacggttctaga ggtttgactggtcccattggtcctcctggcccagctggtcccaacggcataaagggtgag ggtggaccttctggcccaactggtgctgctggtgcccgtggtgctcctggtgaccgtggt gagggtggtcctcccgggcctgctggcttcgctgggccacctggtgcagatggtcagcct ggagccaagggagagttaggcgaggctggacagaagggagatggtggtgcccatggacct caaggaccctctggggcccctggacctgtgggtcccactggtgtttctggacctaaagga gctcgtggtgcccagggggcttctggtgctactggtttccctggtgctgctggaagagtt ggttctcccgggcctaacggtaaccctggtgctgctggccccgctggtcctgctggtaaa gacggtcctaagggagttcgtggtgatgctggaaccccaggaagacagggagacgctggg ctgcgtggagttgctggagcccctggcgagaagggagatgctggaggggatggtctccct ggtcctgatggtccttcaggtccccagggtctggctgggtcacgtggtattgttggtctg cctgggcagcgtggagagaggggcttccctggccttcctggtccttctggagagcccggt aagcagggagctcctggtgctggtggtgaccgtggaccccctgggcctgtggggcctcct ggactgtcgggaccttctggcgagcccggaagagagggcaacgctggatctgatgggccc cctggtagagatggatccaccggagtcaagggtgagcgtggtaacactggtcctgcaggt gcacctggtgcccctggcgctccaggtgcccccggccctgttggccccctgggcaagcag ggagacagaggagagggaggtgctcaaggacctgccggacccgctggaccagctggcgct agaggaatggctggaccccaaggaccccgtggagacaagggagaggctggcgagacagga gagaggggacagaagggacaccgtggcttcaccggtctgcagggtcttcccggacctcca ggctccgctggagaccagggagctgctggacctgccggaccgagtggcgctaagggaccc cctggcccagtcggccccgctggtaaggatggatctaacggtcagcctggacccctcgga ccccctggacctcgtggtcgttctggagaaactggctctgctggtccacctggtaacccc ggaccccctggtccacctggtcctcccggccctggcatcgacatgtctgcctttgctggc ctgtctcagcctgagaagtctccggatcccctgaggtacatgagggctgatgaggcgtcc agctccctgaggcagcacgacgtggaggtggactccacactcaagtccctcaacaaccag atcgagaacctgcgcagccctgatggtagccagaagaaccctgcccgcacctgcagagac ctcagactgtgccacccagagtggaagagcggtgactactgggtggatcctaacattggt agcacagctgatgccatcaaggtcttctgcaacatggagactggcgagacctgtgtgtac cccagcatagccaacgtgcctcaaaagaactggtggacaagcaagagcaaggaccgcaaa cacgtctggttcggagagactatgaatggaggattccacttcagctacgctgaggacggt accaacgctgccagtatccagctgaccttcctaaggctgctgtccacggaagcatctcag aacctcacctaccactgcaagaacagcgtggcctacatggacgcatccaccagcaacctg aagaagggtctgctgctccagggctccaacgacgtggagatcagagctgagggaaacagc cgcttcacctacagcgttgtggaggatggctgcaagaaacacacaggccagtggggaaag actgtcttcgagtacaaaacacagaagacctcccgtctgcccatcgtggacattgctcct atggacattggaggagcggaccaggagttcggtctggatgtgggtgcagtctgctttttg taa

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