Salmo salar (Atlantic salmon): 106566737
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Entry
106566737 CDS
T04363
Symbol
taf4
Name
(RefSeq) TATA-box binding protein associated factor 4
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
106566737 (taf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sasa03021
]
106566737 (taf4)
03036 Chromosome and associated proteins [BR:
sasa03036
]
106566737 (taf4)
Transcription machinery [BR:
sasa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
106566737 (taf4)
Coactivators
SAGA/TFTC/STAGA complex
106566737 (taf4)
Chromosome and associated proteins [BR:
sasa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
106566737 (taf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
MNHE
Motif
Other DBs
NCBI-GeneID:
106566737
NCBI-ProteinID:
XP_013990551
UniProt:
A0A1S3LHY6
LinkDB
All DBs
Position
ssa13:19638897..19652430
Genome browser
AA seq
1048 aa
AA seq
DB search
MSGVVRFHLATLATQLPNATLSVLSCCPCYISSGWDSLNAICNNSSQTVNLAITNQSTLE
SDVSDGVSNRCMRLTSEGSRVKMAAGSGLLDDVFFNTEVDEKVVSDLVGSLESELTVSGR
GNSSVRVQAAANHIDNSAVGRNSNVQDSEMGLSQELAKPGTGVPGGVINSRRSQGSTMYA
AVGTTAAGSSMTAGHSPSKTGAVSGVITGVPDHGTGTRKTGAAGVQTLNGRSVVINSHNS
GSVAALVSSASSTVPAVAVVNNGPSSVVKGNVILPSTSSTVIQTPLMHNAVTSTVISSQL
SVLNSVPTVTLARPPMQTPGTVTSQSGSNNTVLIRSVNVAHPASSEAQINKLESPKTTIQ
TTSQVTAPSVVGKSLVLQNVRTSTPSTFAACPGGIKAIAPQVFSPRLPQPQQNASNIQNI
QLPPGMVLVRSESGQFLMIHQQTLAQMQSQSQSAMTPRAATPTSTPPVQITSVQAPGTPM
MSRQVTPTTTITKQGSPAQTTVQATTTLQRPPVLQQNTIMLGGAAATSGQAPVQPCSAAV
TQRAGTPGTPGAPTVFSTTEILENVKKCKNFLSTLIKLASSGKQSSETTANVKELVKSLL
EGKIEAEDFTSRLYRELNSSPQPYLVPFLKRSLPALRQMTPDSAAFIQQSQLLHGGAQPA
ASSKALTAVVLGGTSTAQKSRLNSSSPGAKGTMHQSPVISLAQTSYSKPGLMVPQQQGAM
ARPQVTLAQSSMVTLRGQPHSHIIMGQPQVVRQLQTVPVVKQALAPGAKVTLGPQSMLSV
VLKNRQEAGGGTFKDDDDINDVASMAGVNLSEESARILATNSELVGMVTRSCKDEAFLYT
SSLTQRVHEIGRMLGVTDLGPEVINYVSHATQHRLQNLLEKVTVVAQQKNITFKEDDKCE
QVSDVRAQLKFFEQLDQMEKQRKEEQEREILMKAAKSRSRQEDPEQLRLKQKAKEMQQQE
LNQIRQKEANMTALAAIGPRKKRKMNSPVRTGAEDLCSGPSPSGGYSSGGSRPQRQRITR
VNLRDLLFCLENERETSRSHLLYKGFLK
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atgtctggtgtggttcgtttccatttggcaacgctagccacacaactaccaaatgcaacc
ctgtctgtactgtcgtgctgcccgtgttatatctcatctggctgggattccttaaatgca
atttgtaacaattcatcccaaacggtaaatctagcaataaccaatcagagcaccctggaa
tccgatgtcagtgacggagtatccaatcggtgcatgcgtctcacgagcgagggtagcaga
gtaaagatggcggcgggctccggtttattggatgatgttttcttcaacacagaggtggac
gagaaagtagttagtgatctagttgggtctttggagtctgagctcacggtatcgggtcgt
ggaaattcttcagtcagggtccaggctgcagcaaatcacattgacaactcagctgtaggt
cgcaattccaatgtccaggacagcgaaatgggactttcacaagagcttgctaaaccaggg
actggcgtgccagggggtgtcattaatagtaggaggtcccagggttcaaccatgtatgct
gcggtcgggacaaccgcggcgggctcgagcatgacagccgggcacagtccgagcaagact
ggggcagtcagtggtgtgataacgggggttcccgatcacggaactgggaccagaaaaact
ggggcggctggtgtacaaactttaaatggaaggagcgttgtgataaactctcataattca
ggaagtgttgccgctttggtgagctcggcaagcagcacagtgcccgccgttgcggttgtc
aacaacggaccgagctcggtggtcaaaggaaacgtgatcttaccctcaacttccagcaca
gtcattcaaacacctcttatgcacaatgctgtcacttcaactgtgatatcgtctcagctg
tctgttctaaacagtgtgcccactgtcacgctcgcgaggccgcctatgcaaacccccgga
acagtcacctcgcagagcgggagtaataatacggttctgatacgatctgtcaacgttgcc
caccctgcaagttcagaagcgcaaatcaacaaattggagtcgccaaaaacgaccatacaa
acgacttcacaagtgaccgctcccagtgttgtaggtaaaagcctggtattacaaaatgtg
aggacctccaccccatcgacttttgcagcctgtcctggtgggataaaggcgatcgcgcca
caggtgttctccccgagacttccgcaaccccaacaaaatgcttcaaacatccaaaacatt
cagctccctccaggcatggtgctggtacgcagtgagagtgggcagtttctgatgatccac
cagcagaccctggcccagatgcagtcccagtcccagagcgccatgaccccacgggcagcc
acccccaccagcactccccctgtccagatcacttctgtacaggctccagggacgcccatg
atgtcccgtcaggtgacccccaccacaaccatcactaagcagggctccccggcccagacc
accgtccaggccaccaccaccctccagaggcctcctgtactacaacagaacaccattatg
ctgggtggagcggccgccacctcaggtcaggctccagtgcagccttgctcggcagcagtc
acccagagagcagggacccctgggacaccaggcgcccccacggtcttttctaccacggag
atcctggaaaacgtgaagaagtgtaagaacttcctgtccacgctgatcaaactggcatcc
agcgggaagcagtcgtctgagaccacagccaacgtcaaggagttagtcaagagcctgctg
gagggtaagatcgaagcggaggacttcaccagtcggttataccgggagctcaactcctct
cctcagccatatctcgtgcctttcctcaagaggagtcttcctgcactgcgtcaaatgacc
ccagactcggcagccttcatccagcagagccagctgcttcacggtggtgcccagcctgcc
gcctcctctaaggccttgactgctgtggtgctggggggcacgtccacggcacagaaatcc
cgtctcaacagtagcagccctggggccaaggggaccatgcaccagtctcctgtcatcagc
ctggcccagacatcttatagcaagcctggcctgatggtgcctcagcagcagggggcaatg
gcgaggcctcaggtgactctggcccagtcatccatggttacgctccgaggccagccccac
agtcacatcatcatggggcagccgcaggtggtcagacagctgcagacagttcctgtagtg
aagcaggctctagcaccaggggccaaggtaacactggggccccagtctatgctctctgta
gtactgaagaacaggcaggaggcaggcggaggaaccttcaaggatgatgatgatataaat
gacgtggcctctatggctggagtcaacctatcagaggagagtgcccgcattctggcaacc
aactctgagctggtcggcatggtgactcgctcctgtaaagacgaggccttcctctacacc
tcctcactaacgcagagagtacatgagataggcaggatgttaggggtgactgacctgggg
ccggaggtgatcaactacgtttcccatgctacacagcatcggctgcagaacctgctggag
aaagtgacggtggtggcgcagcagaaaaacatcaccttcaaggaggatgataagtgtgaa
caggtgagtgacgtgcgagcgcagctgaagttctttgagcagctggatcagatggagaaa
cagaggaaggaggagcaggagagagagatcctgatgaaggcagctaagtctcgatcacga
caagaggacccagaacagcttcggcttaaacagaaggctaaagagatgcagcagcaggaa
ctgaatcagatcaggcagaaggaggccaacatgacggccctggcagccatcggccccagg
aagaaaaggaaaatgaactcccctgtcagaaccggggctgaggacttgtgctctggtccc
tctccgtcaggtgggtacagtagcggaggctccaggcctcagcgccagcgcatcacccgg
gtcaacctcagggacctgctcttctgtctggaaaatgagagagagaccagccgctcacac
ctgctttataaaggcttcctcaaataa
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integrated database retrieval system
