Salmo salar (Atlantic salmon): 106567484
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Entry
106567484 CDS
T04363
Name
(RefSeq) transcription factor SOX-30-like
KO
K09271
transcription factor SOX15/30
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sasa03000
]
106567484
Transcription factors [BR:
sasa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
106567484
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
106567484
NCBI-ProteinID:
XP_013992232
UniProt:
A0A1S3LMP3
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Position
ssa13:50983015..50995104
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AA seq
635 aa
AA seq
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MDRHPKRRAQMTFKKSEQSKNEDDSGPLPSKKHANESEGPASSTEWHRGDGEQKRPVGRP
KGSGRSGNSGVSGDVQVRPKVIFKADSKCGGDGELMPTSSTHLKGAVQGRPVTFEKESAS
SLASKQSKATFDYPTSQVLVIKEEIVTTAPGQAKVKVVQEPATTHHQGCRPVAPTIDFSK
PIHVVHENGMTFTVLDGKAITLSKVPYPPLVHVNVPPPPVKVKTRGMNLTMPPSEAENLE
VPQSIDRNGYVKRPMNAFMVWARIHRPALSKANPTANNADISVQLGIEWSKLTEEEKRPY
YVEARKLKDKHRQEFPGWIYQPRPGKRKCYPSVMSFAPEPSCCSAGTSGPAAESYPVTMM
TMANTTTSSCVPYTQATGSNDHGVQVAITAAPNASQTTSPVSIFFQTTACPHPHPTAPTS
GGKPAERKHEATHSASNPEEASKSRKISRQQAYYNSASEMPSTSMASSSRGLQMPLPNMA
HPHMYPPSPMPHPVGLFPTPRFPFSPPYFMPGPNFYPPGSYPYLHSPYSYPVIQPQDFSN
PMATPMATPGYPYDDNYDQHESTFSLLNRDYPFRQSGEGGQRCQGQAPTASELLGLVPPL
DVRALENVFTNSASVQEVQVTNEEDKEEVRVMRIL
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atggacaggcatcccaagcgaagagcgcaaatgacgttcaagaaaagtgaacaaagtaaa
aacgaagacgacagtgggcctctacctagtaagaaacatgcaaatgaaagcgagggacct
gcatcttcaactgagtggcatcgaggtgatggagaacagaaaagaccagtgggtaggcct
aaaggcagtggacgttctggaaatagtggagttagtggagatgttcaggttaggcctaaa
gttatttttaaagctgatagtaaatgtggtggtgatggagagctaatgcccacaagttca
acacacctcaagggagccgttcaaggtcgaccagttacatttgaaaaggagagcgcatca
tcattagccagtaaacagagtaaagccacatttgattatcccacatctcaagtgctggtc
atcaaggaggagatcgtcacaactgctccaggtcaggccaaggtcaaagttgtccaagaa
cctgcaacaacgcatcatcaaggatgtcgacctgtggctcccactatagacttctccaaa
ccgatccatgttgtccacgaaaatgggatgaccttcacagtattggatggtaaagccata
acgctcagcaaagttccatacccaccacttgttcatgtgaatgttccgccacccccagta
aaggtgaagactagagggatgaatctcaccatgccaccatcagaagcagaaaatcttgaa
gtaccacagagcatagacaggaatggctacgtcaagaggcctatgaatgcgttcatggtc
tgggcgagaatccacaggcctgccctgtccaaggccaacccaacggccaataacgcagac
atcagtgtgcagctaggaatagagtggagcaagctcactgaggaagagaagaggccctac
tatgttgaagcacgtaaactcaaagacaagcacagacaggagttcccaggttggatctat
cagcccagacctggaaaaagaaagtgctacccttctgtgatgtcctttgctcctgaacca
tcctgctgctctgcagggacaagtggtcctgcggctgagtcttatcccgtgaccatgatg
actatggccaatactaccaccagctcctgtgttccatacacacaggccacaggctctaat
gaccatggtgtccaggtggctataacggccgctccaaatgcctctcagactaccagccca
gtctccatattcttccagactactgcctgcccacatccccacccaacagccccaacctct
ggtggtaagcctgcagaacgcaagcatgaagccactcactctgccagcaatcctgaagaa
gcttccaaatccaggaaaatcagcaggcaacaggcctactacaattctgccagtgagatg
ccctcaacaagcatggcatccagctccagaggtctccaaatgccactccctaacatggct
caccctcacatgtatcctccatctcccatgccacatccagtgggcctcttccccacccct
cgcttccccttttctccgccctacttcatgcctggacccaatttttatccaccaggatca
tacccttacctacacagcccatactcctacccagttatccaaccccaggatttctcaaac
cccatggctactcccatggctactccgggctacccctatgatgacaactacgatcagcat
gagtccacattttcccttctcaacagagactacccgtttcggcagagtggagagggcggg
cagagatgtcaagggcaggcccccactgcctctgagctcctaggtttggtcccaccactg
gacgtacgtgccctggagaacgtcttcaccaactctgccagtgtccaggaggtccaagtc
accaatgaggaggacaaggaagaagtgcgcgtgatgagaattctctag
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