Salmo salar (Atlantic salmon): 106567634
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Entry
106567634 CDS
T04363
Name
(RefSeq) HMG box transcription factor BBX-like
KO
K21643
HMG box transcription factor BBX
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sasa03000
]
106567634
Transcription factors [BR:
sasa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
106567634
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DUF2028
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
106567634
NCBI-ProteinID:
XP_013992630
UniProt:
A0A1S3LP71
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Position
ssa13:62718626..62743028
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AA seq
928 aa
AA seq
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MRLTTAQLEHHALVTFTFWVACCRLGSAMKGGGRGKEPPVEVEVSGKRPKRKCLQWHPLL
SKKALDFSEEEEEEDEEELEKPLLVRESRGPEVACGGPMEVEEDSSEQRARRPMNAFLLF
CKRHRSLVRQEHPRLDNRGATKILADWWAVLEPKEKQKYTDMAKEYKDAFMKANPGYKWC
PTTNKPVKSPCHTVSNARKKVWSFPSNSPKGCATAKKVPKTDSTPQLNFAMADPTKMGGL
SMLLLAGEHALTVREISSCSSKSGATDVTKHPENSSLFQLAEISSSTLQPSLTDTAGEGK
PLSRRDQAETWSGTSQQGKSDVPKINVKSPLFQLAEQISSDSSQSTAPEGKQCSQSALFQ
LAEMCLASEAGKMETQDDTRAPHIKTEMVVKEDTGGNIPDFPLSSLPSSSTSSSASSSST
PTNASPPPLSGQAASVKKKKKKKEATAREPPKAVDKDKIPRPGSPKKTLKKRPSSESELE
SLLYTIEAVAKGAWGDAEEDIPKKKASTAVVTIPREPSSPKKKSKAKRLLKAKEEAEIEE
DKEDGRCKELPSTVEAVANLASPKTEAEEASIGSTPDPLGSTEKHTAPPSPPHIKHKVEE
KQREAEANAEGCGSRKSERSCKGALYKTLVSEGMLTSLRANVDRGKRGSFRSGSDEGGWT
DETWAFSQMGPTNPKKLKKSKSKDETAPGLGKLEEEFEKKFNSLPQYSPLTFDKKSTTIT
KKKKTDVSSAPEEQPPKPAKGPSPSQKKTLFHKIVSKYKQKKEKPNTVDKDIAMHSDSPM
SDSAAKAKQTPAPCATATLFPEAMGTSASMPVGSQKRKARKSKITHLVRSADGRVSPAEE
DKVRDLTPEQDDKPLPRETLCNETGCYSAPKQEEADRSSAPEVLPAFFSLSALAEVAAME
NIHRGQRVIGDSQKEMAQTPVLISCADQ
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgaggttgacaacggctcagttggagcaccacgctttggttacctttacattctgggtg
gcctgttgcaggcttggcagcgccatgaaaggtggaggaaggggtaaggagcctcctgtg
gaggtggaggtgagcggcaagcggcccaagcgcaagtgtctacaatggcacccgctactc
tccaagaaggccttggacttctcggaggaggaagaggaggaggacgaagaagaactggag
aagccattgctggtcagggagagccgggggccggaggtggcatgcggggggcccatggag
gtggaggaggactcttcagagcagcgggcccgccggcccatgaacgccttcctgcttttc
tgcaagcgccaccgttcactggtgaggcaggagcaccctcggctggacaaccgcggtgcc
accaagatcctggctgactggtgggctgtgctggagcccaaagagaaacagaagtacaca
gacatggccaaggagtataaggatgccttcatgaaggctaacccaggctacaagtggtgc
cccaccaccaacaagccagtcaagagcccctgccacactgtcagcaacgcacgcaaaaaa
gtgtggtctttcccttccaactcccctaagggctgtgccactgccaagaaagtgcccaag
actgacagcacaccacagcttaatttcgccatggcagatcccacaaagatgggtggccta
agcatgctactgttggctggggagcatgcccttactgtcagagagatttcctcctgttct
tcaaagtctggagccacagatgtcactaagcaccctgagaactcctccctattccaactt
gctgagatctcctccagcacgcttcagcccagtttaacagacacagctggcgaggggaag
cccttgagtcggagggaccaggcagaaacgtggtctggcacctcacagcagggaaagtct
gacgtacccaagatcaacgtcaagtcccctctttttcaactggcagagcagatctcctct
gattcaagccagtcgactgcaccggagggaaagcagtgtagccagtcggctctcttccag
ctcgctgagatgtgcttggcctctgaggcagggaagatggagacacaggacgatacccgt
gccccacacatcaaaactgagatggtggtcaaggaggacactgggggcaacatccccgat
tttcctctttcctctctcccgtcttcctccacttcttcctccgcttcttcctcctccacg
cccaccaacgccagtcccccaccgctcagcggccaagcggccagcgtcaaaaagaagaag
aagaagaaggaagctactgccagggagccacccaaagcggtggacaaagacaagatccct
cgtccgggctcgcccaaaaagaccctcaaaaagcgaccatcgtctgagtctgagttggag
agcctcctctacactatcgaggccgtggctaaaggggcctggggcgatgccgaggaggat
atacccaagaagaaggccagcaccgccgtcgttaccattccgagagagcccagctcaccc
aaaaagaagtccaaagccaagaggctcctgaaggctaaggaagaggccgagatagaggag
gacaaagaggatggaaggtgcaaagagctgccatcgacagtggaggcggtagcgaatcta
gcaagccccaagacagaggctgaggaggccagcatcggcagcaccccggaccccctgggc
agcacggagaagcacaccgcccctcccagccccccgcacatcaagcacaaagtcgaggag
aagcagagggaagcggaggccaacgccgaagggtgtggctccaggaagtctgagagaagc
tgcaagggggcgctgtacaagaccctggtgtcggaagggatgctgacctcactgagggcc
aacgtggacagaggcaaaagaggctcttttcgaagtggatctgatgaagggggctggact
gacgagacctgggctttctcacagatgggacccactaatcccaagaagctaaagaagtca
aaatccaaagacgagacggcgccaggtttggggaaactggaggaggagtttgagaagaag
ttcaacagcctgccgcagtacagccctctgacattcgacaagaaaagcaccaccatcacc
aagaagaaaaaaacagacgttagcagcgcaccggaggaacaacccccaaaacctgccaag
ggtccatctccatctcagaaaaagactttattccacaagattgttagcaagtacaagcag
aaaaaggagaaacccaatactgtggacaaagacatagcgatgcatagtgactcccctatg
tcagactcggctgccaaggccaagcagacccccgccccatgtgccaccgccacgcttttc
ccagaggccatgggaactagcgctagcatgccggtgggcagccagaagaggaaggctagg
aagagcaaaataacccacctggtgcgctcggctgacggcagggtgtccccagcagaggag
gacaaagtcagggacctgaccccggagcaggacgacaagccattaccccgagagacttta
tgcaacgaaacagggtgctacagtgcacccaagcaggaggaagcagataggagcagtgca
cccgaagtcctgcccgcattctttagcctgtctgcccttgccgaggtggcagccatggag
aacattcacagaggccagcgtgtgattggcgacagccagaaggaaatggcccagacccct
gtcctcatctcctgcgctgaccaatga
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