Salmo salar (Atlantic salmon): 106567908
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Entry
106567908 CDS
T04363
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96-like
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106567908
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106567908
03036 Chromosome and associated proteins [BR:
sasa03036
]
106567908
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
106567908
Chromosome and associated proteins [BR:
sasa03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
106567908
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
106567908
NCBI-ProteinID:
XP_013993264
UniProt:
A0A1S3LRQ4
LinkDB
All DBs
Position
ssa13:76913696..76935609
Genome browser
AA seq
1827 aa
AA seq
DB search
MFNKSFGAPFGGGTGGFGTSSTFGQQNTGFGATTGGFGASAFGATNNTGGLFGATQNKPV
VTANPQQIQTGAGRGGGLFGSSTFSQPVTSSTSSGFGFGAASGTSTSLFGSTNTGGGGGL
FSQQSNAFGAAKPASFGTFGTSAASSGGLFGATNSNPFGGASASLFGASGFTQQAAQPGT
TVKFNPATGSDTMVKGGVTTSINTKHQCITAMKEYENKSLEELRLEDYQAGRKGPTNPMA
APTGGLFGVAAAATPSTGAAGLFGSSATNTGFSFGQAKTNFGTSTGGFGAATGSLFGQQQ
QPQQAQQAASLFKPFGQATTTPNTGFSFGNTSTMGQPQQTSTMGGLFGSTAASQAGGLFG
NTAQTTPATGFGTGTGLFGQTNTAFGNVGTQQSLFGNKTAGFGATTTSASSFGTGTGLFG
NKSALTLGTGTNPSNFGFGPTAAGGSLFGNKTAAGGLGTGLGAGFGAAVGTGQMSLFGNN
KTLGSTLGTMGAFGPQGFSTGTSTLGFGAQQQPVALTDPNAAAAQQAVLQQQINALAYSP
FGDSPLFRNPLSDPKKKEERLKPTNPAAQKALTTPTHYKLTPRPATRVRPKALTSSGSSK
SQLFDGLDDDEPSLTNGAFMPRKSIKKLVLKNLNGSSLYSSPINRDTDDLASPPEYPLNG
LSASVDEDDYVREVVEGGDDLEINKFYTKPSLQDTISELNAHRVGARGRNGLEVSSEDIS
LGEDSIQEEREEEVQEVPPHPAGIVLCRVGYYTIPAMDELAKMVDENGVCVVENFTVGRK
GYGSVFFHGEVNVTGLNLDEIVHFRRKEVIVYPDDKNKPAEGEGLNRRAEVTLDGVWPND
KTTCTQIKNPERLSEMNYEGRLENASRKQGARFLEYRPETGSWVFEVAHFSKYGLLDSDE
DEEVPLKVDPKKLKTATTLPPGLQQLPPSQKQVAPQAQSTAVLELLSRMSEVDSDMADIT
QDAPGESMLGEEEGESGMGEEKGSRLGTVTPTEHNLVSASSQIASSLGINPHTLQIMKAS
LFAEDDDGDMFLEQGGMKSSLDRASPRILLPGTQGRPSIGGLLQTRFSGAGLFPQLPDVP
FGGGIPGRLSMSRPSAVVPEPSRLSPWPSLGPSFLLPAPAAETTVRTVGARRLGGPVAPE
NSVTLGKGRLLMDAALFTGRSFRVGWGPGWTLVHCGDRLSGAGDKEQDQGDTGAGGFGFL
PKPAKRKQLSDSPFKVVIEQVVGLEPRDSEESQAVYQRPLEIGLKHSTISTEGACPFIQP
QSGVAALHEYVEWITDLNQEAGAGDAVLAHWALVWTLCEALWGRLGTTEPEPGTSGYLQQ
LERRRSFSAWLSRSATQRIEQEVGLSQAGGHVEAIFSYLTGHCISDACRLAQKSGDHRLS
LLLSQAVGSQYGRELLALQLGDWNRMQTDSFLQEERLRIFALLAGKPVWQSTDCVVNVCS
ELDWKRCLAVHLWYMLPPTASIADALAKYEAAFQGSAEGQKYACAPLPPYLGQSDPLDME
EEESKRPLYDICFHLLKLYSDRHYSLQELLDPLTVTWERLDYRLSWHLWSVLQALHYTHL
SPARQGLIHTSYAAQLESAGLWDMAIYVLLHISEDMLRERAVREMLQLHCPLLETEESAQ
KERFLTERLLIPEQWLHLAKATRARRETDRHREALHLYRAGHWNLCHRLVIQHLASDCII
NDNHEYLLEFLEGLAVPERSAVIQDWDTAGRVYLDYIRVIQTLHAIQQMDGAGYKLERLH
TEVTSLCSRIELLPCSTAKDRLAQSEMAKRVANILRVVLSLQQGGEGGEIPLSQLAPHIG
RLPMPEDYALEELRSLTQSYLRQLIVS
NT seq
5484 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagtcatttggtgctcctttcgggggagggaccggaggatttgggacttca
tccacgtttggacaacaaaacactggcttcggggcgacgacaggtggcttcggggcctca
gcgtttggggcaaccaacaacactggaggactctttggggcgacgcagaataaaccagtg
gtgacagccaatcctcaacaaatccaaactggtgcaggtagaggaggtggcctgtttggt
tccagtacgttcagccagcccgtaacgtcgtccaccagtagcggctttgggtttggcgcg
gccagcggcacgtccactagcctgttcggcagcaccaacacgggcggcggcggaggactc
ttctcccagcagagcaatgctttcggagccgccaaaccagcctcctttggcacgtttggc
acgagcgcagccagcagcggggggctgtttggggcgaccaactccaaccccttcggaggg
gcatctgcctccctgttcggagcttcagggttcactcagcaagccgctcagccaggcacc
actgtcaagttcaatcctgcaacaggaagtgacaccatggtgaaagggggtgtgaccacg
agcattaacaccaagcaccagtgcatcacggccatgaaggagtatgagaacaaatcactg
gaggagctgaggttggaggactaccaggcaggaaggaagggccccactaaccccatggct
gcaccaacggggggtctctttggggttgcggccgcagccacccccagtacgggggctgca
gggctgttcggctcctcagccaccaacacaggcttctccttcggccaggccaaaaccaac
ttcggcaccagtacaggtgggtttggtgcagccacaggcagtctgtttggccagcagcaa
cagccccagcaggcccagcaggcagccagcctgttcaagcccttcggtcaggccacaacc
acacccaatacaggattctccttcggcaacaccagcaccatgggccagccccaacaaacc
agcaccatggggggtctgtttgggagcaccgcggcatcccaggcagggggattgtttgga
aacacagctcagaccacaccagccacaggctttgggacaggcactgggctcttcggacaa
accaacaccgccttcgggaacgtcggcacacagcagagcttgtttggtaataagactgca
gggtttggcgccaccaccaccagcgcctcgtcgtttggcacaggcaccggcctcttcggc
aacaaatccgctctcaccctcggaacaggcaccaacccatctaacttcggttttgggccc
actgctgctggcggaagcctctttgggaacaagacggcagcaggaggactggggactgga
ctgggagccggctttggagcagcggtgggcactgggcagatgtctctttttgggaataac
aagacactgggttccactctgggaacaatgggagcgttcggaccgcagggattcagcaca
ggaaccagcactctgggctttggagcacaacaacagcccgtcgcgctgacggaccctaat
gcggcggcggcccaacaggcagtgctgcagcagcagatcaatgctctggcctactccccc
tttggtgactcccctctcttcagaaaccccctctctgaccccaagaagaaggaggagcgt
ctaaagcccaccaatccggcggcccagaaggcgttgaccacgcccactcactacaagctg
acgccgcggcctgcgacacgtgtgcggcccaaagctctgacatcttcgggctcctccaag
tctcagctgtttgacgggctggatgacgacgagccttctctcaccaatggagccttcatg
cccaggaagagcatcaagaagctggtgctgaagaacctgaatggcagcagcctgtacagc
agcccaatcaacagagacacagatgacctggcctctccaccggagtaccccctcaacgga
ctcagtgccagtgtggatgaggatgattatgtgagggaggtggtggagggaggggatgac
ctggagatcaacaagttctacaccaagcccagcctgcaggacaccatctcagagcttaac
gcccatagggtgggggccaggggcaggaatggcctggaggtgagcagcgaggacatatcg
ctgggagaggactccatacaggaggagcgagaggaggaggtgcaggaggttcccccacac
cctgcaggtatcgttctgtgccgtgtgggctactataccatccccgccatggacgagctg
gccaagatggtggacgagaacggcgtgtgtgtggtggagaacttcaccgtgggcagaaaa
ggttacggctcagtgtttttccatggtgaggtgaatgtgacggggctgaacctggatgag
attgttcacttcagacgcaaagaggtcatcgtctaccccgacgacaagaacaagcctgct
gagggggaggggctcaacaggcgagcggaggtgactctggatggggtgtggcctaatgat
aagaccacttgtactcagataaagaaccctgagcgtctgtctgagatgaactacgagggc
cgcctggagaacgcctcacgcaaacagggcgcccgcttccttgagtaccgccccgagacc
ggctcctgggtgtttgaagtggcccacttctctaagtacggcctgctggactctgacgag
gatgaggaagtgcctctcaaagtggaccccaagaagctgaagacagccacaacacttccc
ccggggctgcagcagcttcctccctcccagaagcaggtggcgccacaggctcagtccacg
gcggtgctggagctgctgagccgcatgtctgaggtggacagtgacatggccgacattacc
caggatgccccaggggagagcatgttgggggaggaggagggggagagcggcatgggggag
gagaagggcagtcggctgggcactgtgacccccacagaacacaaccttgtctctgcatcc
agtcagatcgcctcctcgctgggaatcaaccctcacactctccagatcatgaaggcatct
ctgtttgctgaggatgatgatggtgacatgttcctggagcagggagggatgaagagctct
ctagacagggcctcccctcgcatcctcctgcctggcactcagggcaggccctccatcggt
ggtctcctgcagactcgtttcagcggggcaggtctcttccctcagctccctgacgtgccc
tttggggggggcattcccgggaggctgtccatgtctcggccttccgctgtggttcctgag
ccctcgcggctctccccctggccctcgctggggccctctttcctgctgccggccccagcg
gcagagaccactgttcggacggtgggggctcgacgcctggggggccctgtagccccagag
aactcagtcacactggggaagggccgtctgctgatggatgcagctctgttcacgggccgg
tcgttccgggttggctggggtccaggctggactctggtccactgtggagacaggctgagt
ggggctggggacaaggagcaggaccaaggagacacaggagctggaggttttggattcctg
cctaaacctgccaagcgcaaacaactctcagacagtccgttcaaggtggtgatcgagcag
gtggttggtctggagccgcgggacagtgaggagagccaggcggtgtaccagcgtcccctg
gagatcggcctgaagcacagcaccatcagtacagagggggcctgccccttcatccagccc
cagagtggggtggccgccttgcacgagtacgtggagtggatcacagacctcaaccaggag
gctggtgccggagacgcggtcctggctcactgggctctggtgtggactctgtgtgaggcc
ctgtggggtcggctgggtacgacagagccagagcctggtaccagcggctacctgcagcag
ctggagagaaggaggagcttctcagcctggctgtcccgcagcgccacccagaggatcgag
caggaggtgggcctgagccaggcgggaggacacgtggaggccatcttcagctacctcact
ggacactgcatcagtgacgcctgcaggctggctcagaagagtggggaccaccgcctctcc
ctgctgctgtcccaggcggtgggctctcagtacggccgggagctgctggcgctgcagctt
ggagactggaacagaatgcagacggactcattcctgcaggaggagaggctacgcatcttc
gccctgctcgccgggaaacctgtgtggcagtctacagactgtgtggtgaatgtgtgttca
gagctggactggaagcgttgtttggcggtccacctttggtacatgctgcctcccaccgcc
tccatcgctgacgccctggccaagtacgaagccgccttccagggctctgcagagggtcag
aagtacgcctgcgcccccctgcccccctacctcggccaatcagacccgctggacatggag
gaagaagagtctaaacggccactctacgacatctgtttccacctgctcaaactatacagc
gacagacactacagcctgcaggagttgttggacccgctgacggtgacatgggagcgtctg
gactaccgtctgagctggcacctgtggtcggtcctgcaggcgctgcactacacacacctg
agccccgcccggcagggcctcatacacaccagctacgctgcccagctggagagcgctggc
ctctgggacatggcaatctatgtactgctgcacatatctgaggacatgctccgtgagcgt
gcggtgagggagatgctccagctccactgccctctgctggagacggaggagtctgcccag
aaagagcgcttcctcacagaaagactactgatcccagaacagtggctccacctggccaaa
gctactagagccagaagagagacagacagacacagagaggccctgcacctgtacagagca
ggccactggaacctctgccacaggctggtcatacaacacctggcctcagactgtatcatt
aatgataaccatgagtacctgttggagttcttggaggggctggctgttccagagcgcagt
gctgtgatccaggactgggacacggcaggcagagtctacctggactacatcagagtcata
cagaccttacacgccatacaacagatggacggtgctggttataagctggaacgtctacac
accgaggtgacatcactctgcagcaggatagagctcctcccctgctccaccgctaaggac
cgcctcgcccaatcagagatggccaagcgcgtggctaacatcctgcgtgtggtgttgagt
ctgcagcagggtggtgagggtggcgagatccccttgtcccagctagcgccccacatcggc
cgtctgcccatgcctgaggactatgccctcgaggagctccgcagcctcacccaatcatac
ctgagacagctcatcgtcagctaa
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