Salmo salar (Atlantic salmon): 106568011
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Entry
106568011 CDS
T04363
Name
(RefSeq) BRCA1-A complex subunit RAP80-like
KO
K20775
BRCA1-A complex subunit RAP80
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
106568011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sasa03400
]
106568011
DNA repair and recombination proteins [BR:
sasa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
106568011
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAP80_UIM
Motif
Other DBs
NCBI-GeneID:
106568011
NCBI-ProteinID:
XP_013993466
UniProt:
A0A1S3LR92
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Position
ssa13:70622013..70639557
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AA seq
1164 aa
AA seq
DB search
MPPRKKRENRYTDDGPRKRRRAVDHEEDRVVISDSDEDEDFRPTSLEERKREKESKTRSN
EMTEEEMLDLAMRLSEQEASNTALRQRQEEETMRKAIAESLYADRPTHPHSESLLVDGSP
TQKCQRSPPEAESSIQPPRRKLSYPNHGVADREGAHGVGVANPETSRRGKKEGSPLLDMP
DLSQTQKVYSQSSPLSQASTSMPLSSQEGSSLKNPFGNLSAHVESQECKSTENESQLRKK
SPVFPLAPTVPSASKLILCLHKLSQDLLVDCQASGFLLCSQEGPPSLTLSTKSQMSQSFQ
PKSPTFSKSPVFSRTERTAGGEPGQGSPPMFSETDSGKEEKEASPTFPKRAMFSSSDTGE
EEKAASPTFPGSPVFPRTDQIRDQGPQNCIESVSTSEDHEDRDREDVKSSESSKCLPPRL
RTTLSLNKRLIPIRKTVGVADKVVDQEERQGESSQCAVNRISTPAKFAAEEDLNSEELTL
ALETQPMQELTSNMVLRWSDDDDDDDEKEDGPAKSAQLPSPVFPQENDLPQPSNQCLSTN
TNHHCSPPHIHSPCLVPKKRTHISEDSACEDGESQSKRIRKKFTFKGMYGSPSPFLPRQA
AGRGSQDEAQARYPSSHQPQASSSHLSSPTGSQGDGGVVCYYWGVPFCPRGQDPDAYTQV
IMSQLEVYEKSLKEAQRGLLRKAGWGEPVLPGPPERPFSRRGRPKRHRAPEPLEEEEEEV
QGVRNQQEEVVEVVEDDEEEGEEREWRRSQGGTEEGGRRGRLEWKDYQTLFVSTPEQDEK
SPSPVFHVESNQQHILPRRSLGLRKKERRPSPLPDPLEKEKEEDEKEGEKREEEERMGEE
VVDVGGLEVPGIRNDETQLSDDGTQDLMVTSPAQPQPERQSLPQIQTFLSSPHLLEQRVE
VMEVEEERRSGPVRGPARGEDVRVEVEETGEVQGGVSEPAPPQSPSMDCPMCMRPFPLTE
IELHAAYCDGSTANMEEEEMMAQSQSQVTVKSHRKRTRRGERIGEEQPCSSGSGKAVQGE
KCFLCQQLFHLGDYEKHVEDCIRNQEVSKAASRAGQSGDLLSALDQTEHRDSGTAEAGPC
DTAFRSQHSGLIEDLGESGGSGDIAVPGFRVSTSPIRSFTSISEATDCLIDFKRQYSSCT
SSSSSSRPRQRGRKFNRKFKYTKK
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgcctcctcggaaaaagcgagagaacagatacactgatgatggtcccaggaaacgacga
cgagcagttgatcatgaagaggacagagtcgtcatctcagacagcgacgaggatgaagac
ttcagaccaacatcattagaggagcgcaaacgggagaaggagagtaaaacacgatctaac
gagatgactgaggaagagatgctggacctggccatgaggctgagtgaacaggaggccagc
aacactgctctcaggcaacgacaggaggaggagaccatgaggaaggccatcgctgaaagc
ctctacgcggacagacccactcatccccactcagaatctctgctggtggacgggagccct
acccagaaatgtcaacgttcccctccagaggcagagagcagcatacagccccccaggcgg
aagctctcttaccccaaccatggtgtggctgacagggagggagcccacggtgtaggggtt
gctaacccagaaaccagcaggagggggaaaaaagagggtagtcccttactagatatgcct
gacctgtctcagacccagaaggtctactcccagtcttctcccctcagccaagcttccacc
tccatgcctctttcttcacaggaggggtcttctctgaagaaccctttcggaaacctctca
gcccacgtcgaatctcaggaatgcaagtccacagaaaatgagtcccaactcaggaagaag
tcccctgtattccctcttgctcccacagtcccatcagccagcaaactcatcctgtgcctg
cataagctcagccaggacctcctagtagactgtcaagcctctgggttcctactatgttct
caagagggtcctccaagcttaactctttccacaaagtcccagatgtctcagtcttttcag
ccaaagagccctacattctccaaaagccctgtgttctccaggacagagagaactgcaggc
ggggaaccaggccaagggagtccccctatgttctctgagactgattcaggaaaggaagaa
aaagaggcaagtccaacttttcctaaaagagccatgttctccagtagtgatacaggagaa
gaagagaaagcggcaagtcccacctttcccggaagcccagtcttccccagaactgatcag
ataagggaccagggtccacagaactgtattgaaagtgtctctacatcagaagaccatgag
gatagagaccgagaggatgtgaagagcagcgaatcctcaaagtgccttccaccacgcctc
agaacaaccctgtccctgaacaagagactcatacctataaggaagacagttggagttgca
gacaaagttgttgaccaagaggaacgtcagggtgaatcctcacagtgcgctgtaaacaga
attagcacgcctgcgaagtttgctgcagaagaagaccttaattcagaggaacttacattg
gctttggagactcagccaatgcaggagttaaccagtaatatggtgctacgctggtcagat
gatgatgatgatgatgatgaaaaggaagacggtcctgcaaagtcagctcagttgcccagc
ccagtcttcccacaagagaatgacctcccacaaccaagcaaccagtgtctctccacaaac
accaaccaccactgttcccctccacacatacacagcccctgcctcgtccccaagaaacgc
actcacatctccgaagactccgcatgcgaggacggagagagccagtccaagcgcatccgg
aagaagttcaccttcaagggcatgtatggatctccctccccctttctccccagacaggct
gcaggcagagggagccaggatgaggcacaagccagatacccctcttcccaccagccccag
gcctcttccagccacctctcttcccccacaggcagccagggggatgggggagtggtgtgc
tactattggggcgtgcctttctgtccacgagggcaggacccagatgcctacacgcaggtg
atcatgtcccagctggaggtgtatgagaagagcctgaaggaagcccagaggggtctgctg
aggaaggcaggctggggggagcctgtccttcctggtcccccagagagacctttttccagg
aggggacgccccaagagacacagggccccagaacctctggaggaagaggaggaagaagtg
cagggagtgagaaaccagcaggaggaggtagtggaggtggtagaggatgatgaagaggag
ggtgaggaaagggagtggcggcggtcacagggagggacggaagagggagggaggagagga
agactggagtggaaggactatcagacactgtttgtgtccactcctgaacaagacgaaaaa
tcgccctcacctgtatttcatgtagaatccaatcaacaacacattctacctcgaaggagt
cttggccttagaaaaaaagagagaagaccatcgccactgcctgacccgctggagaaggaa
aaggaagaagatgaaaaagagggagagaagagggaggaggaagaaaggatgggggaggaa
gtggtagatgtcggtggcttagaagttccaggtataagaaatgatgagacccaactcagt
gacgatggcacccaagacctgatggtcaccagccctgcacagccccaaccagagaggcag
tccctgcctcagatccagacttttctctcatcaccccatcttctggagcagcgtgtagag
gtgatggaggtggaagaggagaggaggagtggccctgttaggggtcctgctagaggagag
gatgtgagggtggaagtggaggagacgggggaggtacagggtggggtctcagaacctgca
ccccctcagagccccagcatggactgtcctatgtgcatgcgccccttccccctgacggag
attgagctgcacgctgcctactgtgatggtagtaccgctaacatggaggaagaggagatg
atggctcagagccaatcgcaagttacagtgaagtctcataggaagaggaccagaagggga
gagagaattggagaggagcagccctgttcttctggctctggcaaggcagtgcagggagag
aagtgcttcctgtgtcagcagctctttcatctcggggactatgagaagcacgtagaggac
tgcatcaggaaccaagaagtgtccaaggctgcatccagggccggacagagtggagacttg
ctgagtgctttggaccagacagagcacagagattcagggactgctgaggccggaccatgt
gatactgccttcaggagccaacacagtggccttattgaagatctgggagagtctggggga
agtggagacattgccgtcccaggtttcagagtgagcacctcgcccatccgatccttcacc
tccatctcagaagccacagactgccttattgacttcaagcgccagtactcttcctgtact
tcctcctcttcctcctccaggcccagacaaagagggaggaaattcaataggaaattcaaa
tatactaaaaaatag
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