Salmo salar (Atlantic salmon): 106568095
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Entry
106568095 CDS
T04363
Name
(RefSeq) protocadherin-1-like
KO
K16498
protocadherin delta 1
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
106568095
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sasa01009
]
106568095
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sasa04515
]
106568095
Protein phosphatases and associated proteins [BR:
sasa01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
106568095
Cell adhesion molecules [BR:
sasa04515
]
Cadherins
Protocadherins
106568095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
PepSY
Fibulin_C
PDGLE
NnrU
Motif
Other DBs
NCBI-GeneID:
106568095
NCBI-ProteinID:
XP_013993601
UniProt:
A0A1S3LRW1
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All DBs
Position
ssa13:complement(85019725..85165578)
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AA seq
1008 aa
AA seq
DB search
MDFMELHLGAVLLWVLVLDFCGWTEAGILYRVQEEQPPSTLIGSLASDQGLPDSGHLYKL
EVGAPYLRVDGKTGDIFTTEIPIDRETLRACRSMVRGKPCFLEFEVSVTDLIHNQSPRLI
EGRIEVQDINDNTPQFPSPVLTISVPENTHMGALFSIPLATDRDSERNRVADYALTAGPD
AATLFGLQVAEDRGEKLPQLIVLGSLDRELKDSYDLNIKAVDGGNPQRYSSALLRVVVAD
ANDNAPKFDKATYEAEVSENSPVGHSVLQVKANDSDMGPNGEIEYTLHQALDPVPKLLQI
DRSTGIIYVKGPLDREEISDLTFYVVARDKGPQPKSSKTFVTIEVTDQNDNSPAVEIRGI
GLVSHSDGVANISEDMPVGTAVALVQVSDRDEGENAVVTCVVAGDVPFQLRPASDSSTDN
KRKYFLQTTTPLDYEKVREYRVEIVAVDSGNPALSSTNSLKVQVTDVNDNSPVFSLTLFE
VNFAEENQPGDKVVDVVATDPDSGTNAELVYSIVADTSTRGLFEIDPDSGEVRAQSPLDR
EHRAHYEFRVNAADKGSPSHRGTATVVVKVLDRNDNDPKFMLSGYSFSVLENMPPLSAVG
MVTVLDIDQGENARVQLSVEPDGGRFVVQNGTGTILSSISFDREKESSFSFRLKAVDGGE
PPRSSYVGVTINVLDENDNDPVVTKPSNSSFRHLSPLGSPDSRVELVEAEDLDTGPNAEL
VFSITGGNPYELFSISSTTGEITLAKELTQKHGGLHRLVVRVSDRGKPARHTTALVHIFV
NETIANVSLVEALVGHSLYTPLETDIAGDPDYGLATQRSNILYGSLAGVAGVVMVIVVVV
FIRHRIQRETKSGYQAGKKETKDLYTPKQGPKNGKGKKGRKGKPSKSSKPLGEEEEVSLQ
KSLKFNLDGVNDSPRIHLPLTYPPGSPDLGRHYRSNSPLPSIQLQAQSPSASQKHHVVQD
LPATNTFVGIGGDDNSTGSDQYSDYSYKASQPKYNSKQDAFGGEDFGL
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atggacttcatggaactgcacttgggagcggttttgttgtgggtcctggtgttggatttc
tgtggttggactgaggctggtatcctgtaccgtgtccaggaggagcagccgcccagcacg
ctgataggcagcctggcatcagaccagggcctgccagactctggtcacctttacaagcta
gaggtgggcgctccatacctgcgtgtagatgggaagacaggggacatttttaccacagaa
attcccatagacagggagacactgagagcctgccgcagcatggtcaggggcaagccctgc
ttcctggagtttgaagtgtccgtcacagacttgatccacaaccagagtcccaggctcatc
gagggccgcatcgaggtccaggacatcaatgacaacactccgcagttcccctcccccgtg
ctcaccatctctgtcccagaaaacacccacatgggggcgctgttctccatccccctggcc
acagacagggactcggagaggaacagggtggccgactacgccctaaccgcggggccagat
gcagcgactctcttcggcctgcaagtggcagaggacaggggagagaagctgccccaactc
atcgtcctgggaagtctggaccgggagctcaaggacagttacgacctgaacattaaggct
gtggacggaggtaacccccagcgctacagcagtgccttgctgagagtggtggttgctgac
gctaacgacaatgcgccaaagtttgacaaggccacgtatgaggctgaggtgtcagaaaac
agccctgtgggacactctgtgttgcaggtgaaagccaatgactctgacatgggccccaat
ggagagatagaatatacgctacaccaggcattagacccagtgccaaaactcctgcaaatt
gatcgctccactggcatcatctatgtcaaagggcctttggatcgggaagaaatcagcgat
ttgacattctacgtagtggccagagacaaaggtccccaacccaaaagttccaagaccttt
gttaccatcgaggtgactgaccagaacgacaattcccctgctgtggagatccgtgggatc
ggcctggtgagccacagtgacggtgtggccaacatatcagaggacatgcccgtgggcacg
gcggtggccttggtccaggtgtctgacagggacgagggggagaatgcagtggtcacatgt
gtggtggcaggggacgtgcctttccagctgcgcccagccagtgactcgtccactgacaac
aagagaaaatatttcctgcagaccaccaccccactggactatgagaaggtgagggaatac
cgtgtggagattgtggctgttgattctggcaatccagctctctccagtactaactcatta
aaggtgcaggtgactgatgttaatgacaactctccagtattttccctgaccctgttcgag
gttaactttgcagaggagaaccagccaggggacaaggttgtggacgtggttgccacggac
cctgacagtggcactaatgcagagcttgtctatagcatcgtagcagacacatctaccaga
ggcctgtttgagattgaccctgactcaggggaggtgagggcacaaagccctctggacaga
gaacatagagcacattatgagttcagggtcaacgcggccgataaaggctcccccagtcat
agaggaacagccacggtcgtggtcaaggtgctggaccgcaatgacaacgaccctaagttc
atgctgagtggctacagtttctctgttctggagaacatgcccccactcagcgctgttggt
atggtgacggtgctggacatagatcagggagagaacgcaagagtgcagctctctgtggag
ccagacggaggaaggtttgtggttcagaacggaacaggaaccatcctgtccagcatctcc
tttgaccgggaaaaggagagcagcttcagcttccgtctgaaggcagtggatgggggagag
cctcccaggtcctcctatgtaggtgttaccatcaatgtcttggatgaaaacgacaatgat
cctgtggtcaccaagccctccaactcctccttcagacacttgtcccctctaggttcccca
gacagccgtgtagagctagtggaggctgaagacctggacactgggcccaatgcagagctg
gtcttcagcatcactggaggaaacccttatgaactcttcagcatctcctccactactggg
gagatcaccctggccaaggagcttacccagaaacatggtgggctccatcgcctggtggtt
agggtgagtgacagaggcaagcctgcacgccacactactgccctggtgcacatcttcgtc
aatgagaccatcgctaatgtcagcctggtggaggcgctggtgggacacagtctctacaca
cctctggagacagacatcgctggtgaccctgactacggcctggccacccagcgcagtaac
atcctgtacggcagcctggctggagtggcaggcgttgtcatggtgattgtggtggtggtg
tttatccgccaccgcattcagagggagacgaagagtggctaccaggctggcaagaaggag
accaaggacctttacacccccaagcaggggcccaagaacggcaaaggcaagaaaggcagg
aaaggaaagccctctaagtcctccaagcccttgggagaggaggaagaggtcagcctccag
aagagtctcaagttcaacctggatggggtcaacgacagccccaggatccacctgcccctg
acatatcccccaggtagccctgacctgggcagacactaccgctccaactctcccctgccc
tccatccagctgcaggcccagtcgccctcggcctcccagaagcatcacgtggtccaggac
ctccctgccactaacaccttcgtagggattggaggagatgacaactcaacaggttcagac
cagtactcggattatagctacaaggccagccagccaaagtacaacagcaaacaggatgct
tttggaggagaagattttggtctatga
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