Salmo salar (Atlantic salmon): 106568354
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Entry
106568354 CDS
T04363
Name
(RefSeq) thrombospondin-4-B-like
KO
K04659
thrombospondin 2/3/4/5
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04145
Phagosome
sasa04510
Focal adhesion
sasa04512
ECM-receptor interaction
sasa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106568354
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
106568354
09144 Cellular community - eukaryotes
04510 Focal adhesion
106568354
09142 Cell motility
04820 Cytoskeleton in muscle cells
106568354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sasa04131
]
106568354
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sasa04147
]
106568354
00536 Glycosaminoglycan binding proteins [BR:
sasa00536
]
106568354
Membrane trafficking [BR:
sasa04131
]
Endocytosis
Phagocytosis
Opsonins
106568354
Exosome [BR:
sasa04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
106568354
Exosomal proteins of colorectal cancer cells
106568354
Exosomal proteins of bladder cancer cells
106568354
Glycosaminoglycan binding proteins [BR:
sasa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106568354
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_CA
EGF_3
EGF_MSP1_1
cEGF
DUF7630
EGF
Motif
Other DBs
NCBI-GeneID:
106568354
NCBI-ProteinID:
XP_013994110
UniProt:
A0A1S3LTE6
LinkDB
All DBs
Position
ssa13:93477586..93494351
Genome browser
AA seq
939 aa
AA seq
DB search
MGLWTTLIVASQLILNLCSEVGAQGSVYDLLNSPDCLPDLLQGGLVEQGVNEAFILTTFK
LQPKTGTTVFGLYNPRDNSKYFEFTVLGKLNRAVLRYLRSDRRMSSVTFNNIQLADGQRH
RLLFHLKGMQQGPGGVELHLDCRLVETVRDLPSVFQGLPAGYGVVELKSMQGKAEEELEE
LKLVVGDTFENVASLQNCHQQGDSVQTLGVNTKQLSNQMLDLTKVINELKDVLIQQVKET
SFLRNTISECQACGLGGSEVMKQKCAPGVCFRGDMCIETEDGVECGPCPDGYTGDGFSCD
DVDECQFNPCFPGVKCVNTAPGFRCDACPLGYSGLAVEGVGVVYAQTNKQVCDDIDECKE
PNNGQCTANSLCHNSAGSYVCGGCKTGYTGDQVKGCKPERSCGNSLTNPCDVNAQCFQER
DGSITCQCGIGWAGNGYLCGKDTDIDGYPDEKLKCKDMLCKKDNCMRVPNSGQEDADKDG
QGDACDTDADGDGILNEQDNCWLKPNVDQRNSDKDSHGDACDNCRTVENPDQRDTDSDGK
GDACDDDMDGDGLKNFLDNCQRVVNRDQLDRDGDGVGDACDSCPDIPNPNQSDIDHDLVG
DSCDTNQDSDGDGHQDTKDNCPNVINSSQLDTDKDGLGDECDDDDDNDNIPDFLPPGPDN
CRLVPNPDQLDENNDGVGDVCESDFDQDKVIDRIDNCPENAEVTLTDFRAYQTVVLDPEG
DAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFSGVDFEGTFHVNTVTDDDYAGFIFGY
QDSSSFYVVMWKQTEQTYWQATPFRAVAEPGIQLKAVKSKSGPGEHLRNSLWHTGDTNDQ
VRLLWKDPRNVGWKDKVSYRWYLQHRPQVGYIRARFYEGTELVADSGVTIDTTMRGGRLG
VFCFSQENIIWSNLKYRCNDTIPGDFQEFSMQHGVVDGL
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atggggctgtggacgacgctgatcgtggcttcgcagctgatcttgaacctgtgttctgaa
gtgggagcccagggctcagtgtatgatctcctcaattccccggactgtctgccagacctg
ctgcagggcggcttagtggagcagggcgtgaatgaggctttcatcctcaccaccttcaag
ctgcagcccaagactggcaccacagtgttcggcctgtacaacccccgggacaacagcaag
tactttgagttcaccgtgctggggaaactcaacagagccgtgctgcgttacctgaggagt
gatcggaggatgagctccgtgaccttcaacaacatccagctggcagacggtcagcgccac
cgcctccttttccacctgaagggcatgcagcagggacccgggggggtggagctacacctg
gactgcaggctggtggagacggtccgggacctcccctccgtgtttcagggtctgcctgca
ggctacggtgtggtggagctgaagagcatgcagggcaaagcagaggaagagctggaggag
ctgaaactagtggtgggagacacgtttgagaacgtagcttctcttcaaaactgccaccaa
caaggagactcagtgcagactctgggggtcaacacaaagcagctgtccaatcaaatgctt
gatctcaccaaggtgataaatgagctgaaggatgtcctcattcagcaggtcaaagagaca
tcttttctcagaaacaccatctctgagtgccaggcttgtggactgggtggaagcgaagtc
atgaagcagaagtgtgcccctggcgtttgtttccgcggcgacatgtgtattgagacggag
gacggggttgagtgtggaccctgccctgatggatacacaggggacggcttcagctgtgat
gatgtggatgagtgtcaatttaacccatgcttccccggggtgaagtgtgtgaacacagct
ccagggtttcgctgtgacgcctgtcctctgggctactctggtctggctgttgaaggggtg
ggagtggtctacgcacagacaaacaaacaggtctgtgatgacatcgacgagtgcaaagaa
cccaacaatggacagtgcaccgccaactctctctgtcacaactctgcgggttcatacgtc
tgtgggggctgtaagacaggctacacaggggaccaggtgaagggctgtaagccagagagg
agctgtggtaacagtttgaccaacccctgtgacgtcaacgcccagtgtttccaagaaaga
gacggctccatcacctgtcagtgtgggattggctgggctggtaatggctacctatgtgga
aaggatacagacattgatggataccctgatgagaaactcaagtgcaaggatatgctctgt
aaaaaggataactgcatgcgcgttcccaactctggccaagaggatgctgacaaggacgga
caaggagacgcttgtgacaccgacgctgatggtgacggtattctgaatgaacaggataac
tgctggctgaagcctaacgtagaccagaggaacagtgacaaggacagccatggtgatgcc
tgtgacaactgtcgcacagtggagaaccctgatcagagggacactgacagtgatgggaaa
ggagacgcctgcgatgatgacatggatggagatggcttgaagaacttccttgataactgc
cagcgggtggtgaaccgggaccagttggaccgggatggagacggagtgggagatgcctgt
gacagctgccctgatatccctaatcctaaccagtccgacattgaccatgacctggttggg
gattcttgtgacacaaatcaagacagtgatggcgacggtcaccaggacaccaaggacaac
tgtcccaacgtgatcaacagctcccagctggacacagacaaagacggcctgggggatgag
tgtgatgatgacgatgacaacgacaacatccctgacttcctgccaccgggacccgacaac
tgcagactggtgcccaaccccgaccagctggatgagaacaatgatggtgttggagatgtg
tgtgagtcagactttgaccaggacaaggtgatagacaggatagacaactgtccagagaac
gctgaggtcactctgacagacttcagagcctatcagacggtggtgctggacccggagggc
gatgcccagattgaccccaactgggtggtacttaatcagggaatggagattgttcagacc
atgaacagtgaccctggacttgctgtcggttacactgcgttcagtggggtggactttgag
gggacattccatgttaacacggtgactgacgatgactacgcaggcttcatctttggctac
caggactcctcctccttctacgtggtcatgtggaaacagactgagcagacctactggcag
gccacaccctttagagcagtggctgagcctggcatccagctcaaggctgtgaagtctaag
tcaggtccaggggagcacctgaggaactccctgtggcacacaggggacaccaacgaccag
gtgcgtctgctgtggaaggaccccaggaacgtgggctggaaggacaaggtttcctaccgt
tggtacctgcagcaccgaccccaggtcggctacatcagggcccgtttctatgagggtaca
gagctggtggctgactctggtgtgaccatcgacaccaccatgagaggaggccgactgggc
gtgttctgtttctctcaggaaaacataatctggtccaacctaaagtaccgctgcaatgat
accatccctggggacttccaggagttcagcatgcagcacggcgttgtcgacggtctctaa
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integrated database retrieval system
