KEGG   Salmo salar (Atlantic salmon): 106568707
Entry
106568707         CDS       T04363                                 
Name
(RefSeq) collagen alpha-3(IV) chain-like
  KO
K06237  collagen type IV alpha
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa04510  Focal adhesion
sasa04512  ECM-receptor interaction
sasa04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    106568707
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    106568707
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    106568707
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sasa04147]
    106568707
   00536 Glycosaminoglycan binding proteins [BR:sasa00536]
    106568707
Exosome [BR:sasa04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   106568707
Glycosaminoglycan binding proteins [BR:sasa00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   106568707
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 106568707
NCBI-ProteinID: XP_013994756
UniProt: A0A1S3LV83
LinkDB
Position
ssa14:8122243..8196121
AA seq 1655 aa
MRTAWLCFVFLGMMLLGIEAKDCACTGKSRCHCEGVKGNKGEKGYSGETGPPGSVGYPGS
EGHPGTVGPKGDVGPHGPPGQYGNRGPEGKEGFSGTPGLPGIPGLQGPMGQQGAPGCNGT
EGNRGSTGPPGLHSSDGLRGSPGAPGPKGESQTIGSGQPGPRGRDGDQGVPGSPGPTGPS
GEAGLRGVEGLIGLPGAPGLKGQEGRRSSIPGPRGLKGHQGPPGVPGPKGIKLYAHAPFD
MKGEIGELGEKGCKGSPGYAGHIHFKGAKGDQGDLGTEGRPGKDGERGLAGYKGRKGNHG
SAGPDGIPGPWGQKGVQGQDGDPGEVTMIGEAVFGSGGAKGQQGLAGSPGPTGVTGPPGN
TGFQGPPGPPAPNYGDDPYNRGAKGRSGPKGDKGDQGPIIHGEPGREGFPGTTGESGDPG
PPGPSGDSGNLKGFIGPPGEKGAKGLTGEQGYSGQYGLKGQKGEVCRLCTGKGSGEPGPP
GPPGQPGFPGFNAGPGPKGEPGFKGPSGPPGRPGPHGPSGVPGPPGLKGNPGSHNHHGIK
GEKGSPGLAGRSGQDGNQGNPGFPGRKGQQGPKGDPYYGPPGLKGDVGVPGHPGPQGYQG
PDGSPGPVGIGPLGHPGSKGNSGVPGLPGIAGYPGQKGEPSKRVAYQGVPGPPGQMGLPG
LQGPPGPRGSAGLQGVDGYQGEKGDSGGFSTLGGRGPTGPKGDKGHPGPPGTSGSGSPGR
PGTLGIPGEPGSKGDVGFGAPAPVGPKGFQGGVGARGPPGDPGLLGRPGNPGPIGLNGSP
GPKGSKGGVGSQGPPGYAHTDCTGATTGTPGSPGRPGPPGLNGQTGALGAPGAPGFGRSG
PAGDPGPPGVSGPGVQGLDGQKGGRGRDGLTGPPGPRGDPGLDGRSGSGPDGFPGSGGHP
GPRGSDGRDGDKGHRGVPGPVGDNGTPGPSGPAPITDLYGLPGDPGKLGLLGFSGARGDP
GYPGPKGIDGRDGDPGKHGPRGPPGDRGADDLYSVGGPGPSGPRGDIGSMGLPGPHGIKG
VLGYHGGLGQDGRPGPYGPKGTKGEPSYAQPGRLGPPGQKGEPALSNSHGSKGERGSPGC
AGRPGSQGPTGANGDPGHHGHHGPLGPAGPPGTDGPPGPPGPTPSYGAPGQPGLPGPPGP
CGPKGNQGSDGIPGPAGQKGETLIVGLTPGLRGENGQPGPKGDVGFPGPTILGPPGFTGD
QGIEGPQGPRGEPGLGAVCLKGLKGNTGPHGRPGSPGQQGPRGQPGSGGYGYKGDRGDTG
SPGGRGFDGPRGDPGLPGPWGPRAIPGPPGPIGDPGHPGPPGFPGETGDPSYNPGTKGPN
GAKGWPGPPGRPGLDVSGQVRFHQGDPGRLGHPGNQGFPGPIGPPGRPGFAGPTGPKGQH
GHSPPGLPGFPGRKGDKGSPGRTGPVGYQGSPGQKGSRGPWGSSTAGLADSFLLARHSQT
IRVPDCPRGTTLIYSGYSLLFINGNERAHGQDLGSMGSCLPRFSTMPFLFCDTDNTCRYA
ARNDYSYWLSTEKPMPRSMDLIRGDEIGSYISRCSVCEGSSNAIAIHSQTTQTPDCPRDW
ESLWTGYSFVMQTGAGAEGSGQPLVSPGSCLEHFRQVPFIECHGRGTCNYFPDSYSYWLA
SLDPNRMFSKPVPQTVKGRLLENVISRCRVCRKPY
NT seq 4968 nt   +upstreamnt  +downstreamnt
atgaggacagcatggctttgtttcgtgttcctggggatgatgctgctgggaattgaggcg
aaggattgtgcgtgtactgggaagtcgaggtgtcactgtgaaggagtcaaaggcaataag
ggagaaaagggttactcaggagagactggtccacctgggtcggttggctatccgggctca
gagggtcaccctggaacagtgggaccaaagggggacgtgggccctcatggacctccagga
caatatggcaatcggggacctgagggtaaagaaggattttctgggacaccaggtctaccg
ggcatcccaggccttcaaggaccaatgggccaacaaggtgccccaggatgcaatggaaca
gaggggaacaggggttcaactggtccacctggactccacagcagtgatggattaagaggt
tcacctggagcgcctggaccaaagggtgaatctcaaacaattggaagtggccaacctgga
cctagaggaagagacggtgaccagggtgtccctgggtcaccaggaccgacgggaccatca
ggggaagcaggacttcgtggggttgagggattgataggcctacctggagcaccaggatta
aagggtcaagagggacgccgctctagtatccctggccctcgtggtctaaagggacaccaa
gggccccctggagtcccgggaccgaaagggatcaaactatacgcccacgctcccttcgat
atgaagggagagataggtgaactgggtgagaagggctgtaagggttcacctggttatgct
ggccacatccattttaaaggagcaaaaggggaccaaggggaccttggtactgagggaagg
ccagggaaggatggggaacgaggactcgctggatataaggggagaaaggggaatcacggt
tcagcaggtcctgatggaatccctggaccatggggacagaaaggcgttcagggtcaagat
ggtgaccccggggaggtgaccatgattggcgaggctgtgtttggctccgggggtgccaaa
ggacaacaagggttggctggctctccgggtcccactggagttactggtcccccaggtaac
accggtttccaggggcctcctggacctccagctcctaactatggagatgatccctacaat
cgcggagcgaagggccgcagtggacctaaaggagataaaggagaccaaggacccatcatc
cacggcgagccaggcagagagggctttccaggaacaactggggaaagtggagaccctgga
cccccaggaccatctggagactcaggaaatcttaagggctttataggacctccaggggaa
aagggagccaagggcttgacaggcgaacaagggtacagtggccaatatggtttaaaaggt
cagaaaggagaggtctgtaggttgtgtacaggaaaagggtctggagagccgggaccccca
ggaccccccggtcagcctggattcccaggctttaatgcaggaccagggcccaaaggagag
ccaggattcaaaggcccatcaggaccacctggacgaccgggtccccacggcccctcaggt
gttccagggcccccggggctgaagggaaatccaggttcccacaaccaccacgggataaag
ggagagaaaggatccccaggactagctggcagatcagggcaggatggcaatcaagggaac
cctggcttccctggacgcaagggccaacaaggccccaagggtgatccgtactatggcccg
ccgggtctgaagggagatgttggtgtcccaggccatcccggaccacagggataccaagga
ccagatgggtcgccaggtccagtaggcataggacctcttggccacccaggatccaaaggc
aatagtggggtaccaggtctacctggcatagctggctacccaggtcagaaaggtgagccc
agcaaaagagtggcttaccagggagtcccaggcccaccaggacagatggggctgcctggg
ttacagggccccccaggtcctcgtggtagtgctggtttacaaggagtagatggttaccag
ggggagaaaggagacagtggtggattctccaccctgggaggacgaggacccactggaccg
aaaggtgacaaagggcacccgggacccccaggtacctctggtagcggctctcctggacga
cccggcacattgggaatccctggggaaccagggtcaaagggtgatgttgggtttggggcc
ccagctccagtcggccctaaaggtttccaaggtggtgttggggcccggggacctccagga
gacccagggctactgggacgaccagggaatccaggaccaataggcctcaatgggtcacca
ggccccaaaggaagtaaaggtggagtaggttcccaaggaccacctggttacgcacatact
gactgtacaggagccacaaccggaacacctggttcaccaggcagacccggacctccaggt
ttaaatggacagacgggtgcgcttggggcccctggcgctccaggttttggacgttcaggc
ccggctggtgaccctgggccccctggggtctccggacccggagtgcagggactagatgga
cagaagggaggcagagggagagatgggttaacaggcccaccaggtcctcgaggtgatcct
gggctggatggaagatctggatcgggccctgacggattccctggatctggaggacatccc
ggccccagagggtcggatggccgtgatggggataaaggccatagaggtgtaccaggccct
gtgggggacaatggaaccccaggcccttctggaccagcacctatcacagacttatatggg
ctcccaggggaccctggaaagcttggtctgcttggtttttctggtgcaagaggagaccct
ggatatcctggaccaaaaggcattgatgggagggatggtgacccaggaaaacatgggcct
agaggtcccccaggtgatcgtggagccgatgacctatattcagtaggaggaccaggccca
tctggacccaggggagatattgggagcatgggtttaccaggtccccatggaataaaggga
gttctgggttaccatggaggcctgggacaagatggtagacccggtccatacgggcctaaa
ggaactaaaggagagcccagttatgctcaaccaggccgcctaggaccacctggacaaaag
ggcgagccagccttgtctaacagccatggttccaagggagagagaggctctcctggttgc
gcaggtcgtccaggctcccaagggcccactggagccaatggagacccaggacatcatgga
catcatggacccctaggtcctgcagggccacctggtaccgatggtcctccaggcccccca
ggacccactccgtcatatggagctccaggacaaccagggttacctggccctcctggtccc
tgtggtcctaaaggtaaccaggggagcgatggcattcctggacctgctggtcagaaggga
gagacattgattgtggggttgactcctggcctacgtggagagaatggacagccaggtcca
aagggagatgtgggttttcctggccccaccattttggggcccccagggtttactggagac
caaggcattgaaggaccccaaggtcctcgtggtgagccggggcttggagccgtttgtctc
aaagggctgaaaggaaacactggtcctcatggcagacctggaagccctgggcaacagggt
ccacggggacagccagggtctggaggttatggatataaaggggacaggggagacacaggc
tctccagggggcagaggctttgacgggcccagaggggacccagggcttccagggccatgg
ggaccaagagccatccctggacctccaggaccaataggtgacccaggtcaccctggaccc
ccaggattccccggtgagacgggtgatcctagttataaccccggcacgaaaggaccaaat
ggggccaaaggctggccaggaccaccaggtcgtccaggacttgacgtgtctggacaagtg
agattccatcaaggggatccaggccgacttggtcaccccgggaaccaaggatttccaggt
ccaattgggccgccaggacggccaggatttgcaggccccacaggccctaagggtcagcat
ggacacagccctccaggcctgcctgggttccctggacgcaagggagacaagggatcacca
ggacggacagggccggtgggctaccaagggtctccgggtcagaagggttctcgtggcccg
tggggctccagcacggcaggcctggctgacagtttcctgctggcccgacacagccagacg
atcagagtgcctgactgccccagaggtaccaccctcatctactctggatactctctgctc
ttcatcaatggcaatgagagagcccacggacaagacctaggctccatgggcagctgccta
ccacgtttctccaccatgcccttcctgttctgtgacacggacaacacctgtcgctacgcc
gcccgcaacgactactcctattggctgtcgacggagaagcccatgccgcgcagcatggac
ctaatcagaggagatgagatagggagctacatcagcaggtgttcagtgtgtgagggcagc
tccaatgccatcgccatccacagccagaccacccagaccccagactgtcctcgtgactgg
gaatccctctggactggatactcctttgtcatgcaaacgggtgcgggtgctgaggggtcg
gggcagccgctagtctccccaggctcgtgcctggaacacttccgccaggtccccttcatc
gagtgccacggccggggaacctgcaactacttcccagactcctacagctactggctggcc
tcactcgacccgaatcgcatgttcagtaagcctgtgccccagactgtgaagggacgtctt
ctagagaatgtcatcagtcgctgccgcgtctgcaggaaaccctattga

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