Salmo salar (Atlantic salmon): 106568707
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Entry
106568707 CDS
T04363
Name
(RefSeq) collagen alpha-3(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04510
Focal adhesion
sasa04512
ECM-receptor interaction
sasa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106568707
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106568707
09142 Cell motility
04820 Cytoskeleton in muscle cells
106568707
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sasa04147
]
106568707
00536 Glycosaminoglycan binding proteins [BR:
sasa00536
]
106568707
Exosome [BR:
sasa04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
106568707
Glycosaminoglycan binding proteins [BR:
sasa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106568707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
106568707
NCBI-ProteinID:
XP_013994756
UniProt:
A0A1S3LV83
LinkDB
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Position
ssa14:8122243..8196121
Genome browser
AA seq
1655 aa
AA seq
DB search
MRTAWLCFVFLGMMLLGIEAKDCACTGKSRCHCEGVKGNKGEKGYSGETGPPGSVGYPGS
EGHPGTVGPKGDVGPHGPPGQYGNRGPEGKEGFSGTPGLPGIPGLQGPMGQQGAPGCNGT
EGNRGSTGPPGLHSSDGLRGSPGAPGPKGESQTIGSGQPGPRGRDGDQGVPGSPGPTGPS
GEAGLRGVEGLIGLPGAPGLKGQEGRRSSIPGPRGLKGHQGPPGVPGPKGIKLYAHAPFD
MKGEIGELGEKGCKGSPGYAGHIHFKGAKGDQGDLGTEGRPGKDGERGLAGYKGRKGNHG
SAGPDGIPGPWGQKGVQGQDGDPGEVTMIGEAVFGSGGAKGQQGLAGSPGPTGVTGPPGN
TGFQGPPGPPAPNYGDDPYNRGAKGRSGPKGDKGDQGPIIHGEPGREGFPGTTGESGDPG
PPGPSGDSGNLKGFIGPPGEKGAKGLTGEQGYSGQYGLKGQKGEVCRLCTGKGSGEPGPP
GPPGQPGFPGFNAGPGPKGEPGFKGPSGPPGRPGPHGPSGVPGPPGLKGNPGSHNHHGIK
GEKGSPGLAGRSGQDGNQGNPGFPGRKGQQGPKGDPYYGPPGLKGDVGVPGHPGPQGYQG
PDGSPGPVGIGPLGHPGSKGNSGVPGLPGIAGYPGQKGEPSKRVAYQGVPGPPGQMGLPG
LQGPPGPRGSAGLQGVDGYQGEKGDSGGFSTLGGRGPTGPKGDKGHPGPPGTSGSGSPGR
PGTLGIPGEPGSKGDVGFGAPAPVGPKGFQGGVGARGPPGDPGLLGRPGNPGPIGLNGSP
GPKGSKGGVGSQGPPGYAHTDCTGATTGTPGSPGRPGPPGLNGQTGALGAPGAPGFGRSG
PAGDPGPPGVSGPGVQGLDGQKGGRGRDGLTGPPGPRGDPGLDGRSGSGPDGFPGSGGHP
GPRGSDGRDGDKGHRGVPGPVGDNGTPGPSGPAPITDLYGLPGDPGKLGLLGFSGARGDP
GYPGPKGIDGRDGDPGKHGPRGPPGDRGADDLYSVGGPGPSGPRGDIGSMGLPGPHGIKG
VLGYHGGLGQDGRPGPYGPKGTKGEPSYAQPGRLGPPGQKGEPALSNSHGSKGERGSPGC
AGRPGSQGPTGANGDPGHHGHHGPLGPAGPPGTDGPPGPPGPTPSYGAPGQPGLPGPPGP
CGPKGNQGSDGIPGPAGQKGETLIVGLTPGLRGENGQPGPKGDVGFPGPTILGPPGFTGD
QGIEGPQGPRGEPGLGAVCLKGLKGNTGPHGRPGSPGQQGPRGQPGSGGYGYKGDRGDTG
SPGGRGFDGPRGDPGLPGPWGPRAIPGPPGPIGDPGHPGPPGFPGETGDPSYNPGTKGPN
GAKGWPGPPGRPGLDVSGQVRFHQGDPGRLGHPGNQGFPGPIGPPGRPGFAGPTGPKGQH
GHSPPGLPGFPGRKGDKGSPGRTGPVGYQGSPGQKGSRGPWGSSTAGLADSFLLARHSQT
IRVPDCPRGTTLIYSGYSLLFINGNERAHGQDLGSMGSCLPRFSTMPFLFCDTDNTCRYA
ARNDYSYWLSTEKPMPRSMDLIRGDEIGSYISRCSVCEGSSNAIAIHSQTTQTPDCPRDW
ESLWTGYSFVMQTGAGAEGSGQPLVSPGSCLEHFRQVPFIECHGRGTCNYFPDSYSYWLA
SLDPNRMFSKPVPQTVKGRLLENVISRCRVCRKPY
NT seq
4968 nt
NT seq
+upstream
nt +downstream
nt
atgaggacagcatggctttgtttcgtgttcctggggatgatgctgctgggaattgaggcg
aaggattgtgcgtgtactgggaagtcgaggtgtcactgtgaaggagtcaaaggcaataag
ggagaaaagggttactcaggagagactggtccacctgggtcggttggctatccgggctca
gagggtcaccctggaacagtgggaccaaagggggacgtgggccctcatggacctccagga
caatatggcaatcggggacctgagggtaaagaaggattttctgggacaccaggtctaccg
ggcatcccaggccttcaaggaccaatgggccaacaaggtgccccaggatgcaatggaaca
gaggggaacaggggttcaactggtccacctggactccacagcagtgatggattaagaggt
tcacctggagcgcctggaccaaagggtgaatctcaaacaattggaagtggccaacctgga
cctagaggaagagacggtgaccagggtgtccctgggtcaccaggaccgacgggaccatca
ggggaagcaggacttcgtggggttgagggattgataggcctacctggagcaccaggatta
aagggtcaagagggacgccgctctagtatccctggccctcgtggtctaaagggacaccaa
gggccccctggagtcccgggaccgaaagggatcaaactatacgcccacgctcccttcgat
atgaagggagagataggtgaactgggtgagaagggctgtaagggttcacctggttatgct
ggccacatccattttaaaggagcaaaaggggaccaaggggaccttggtactgagggaagg
ccagggaaggatggggaacgaggactcgctggatataaggggagaaaggggaatcacggt
tcagcaggtcctgatggaatccctggaccatggggacagaaaggcgttcagggtcaagat
ggtgaccccggggaggtgaccatgattggcgaggctgtgtttggctccgggggtgccaaa
ggacaacaagggttggctggctctccgggtcccactggagttactggtcccccaggtaac
accggtttccaggggcctcctggacctccagctcctaactatggagatgatccctacaat
cgcggagcgaagggccgcagtggacctaaaggagataaaggagaccaaggacccatcatc
cacggcgagccaggcagagagggctttccaggaacaactggggaaagtggagaccctgga
cccccaggaccatctggagactcaggaaatcttaagggctttataggacctccaggggaa
aagggagccaagggcttgacaggcgaacaagggtacagtggccaatatggtttaaaaggt
cagaaaggagaggtctgtaggttgtgtacaggaaaagggtctggagagccgggaccccca
ggaccccccggtcagcctggattcccaggctttaatgcaggaccagggcccaaaggagag
ccaggattcaaaggcccatcaggaccacctggacgaccgggtccccacggcccctcaggt
gttccagggcccccggggctgaagggaaatccaggttcccacaaccaccacgggataaag
ggagagaaaggatccccaggactagctggcagatcagggcaggatggcaatcaagggaac
cctggcttccctggacgcaagggccaacaaggccccaagggtgatccgtactatggcccg
ccgggtctgaagggagatgttggtgtcccaggccatcccggaccacagggataccaagga
ccagatgggtcgccaggtccagtaggcataggacctcttggccacccaggatccaaaggc
aatagtggggtaccaggtctacctggcatagctggctacccaggtcagaaaggtgagccc
agcaaaagagtggcttaccagggagtcccaggcccaccaggacagatggggctgcctggg
ttacagggccccccaggtcctcgtggtagtgctggtttacaaggagtagatggttaccag
ggggagaaaggagacagtggtggattctccaccctgggaggacgaggacccactggaccg
aaaggtgacaaagggcacccgggacccccaggtacctctggtagcggctctcctggacga
cccggcacattgggaatccctggggaaccagggtcaaagggtgatgttgggtttggggcc
ccagctccagtcggccctaaaggtttccaaggtggtgttggggcccggggacctccagga
gacccagggctactgggacgaccagggaatccaggaccaataggcctcaatgggtcacca
ggccccaaaggaagtaaaggtggagtaggttcccaaggaccacctggttacgcacatact
gactgtacaggagccacaaccggaacacctggttcaccaggcagacccggacctccaggt
ttaaatggacagacgggtgcgcttggggcccctggcgctccaggttttggacgttcaggc
ccggctggtgaccctgggccccctggggtctccggacccggagtgcagggactagatgga
cagaagggaggcagagggagagatgggttaacaggcccaccaggtcctcgaggtgatcct
gggctggatggaagatctggatcgggccctgacggattccctggatctggaggacatccc
ggccccagagggtcggatggccgtgatggggataaaggccatagaggtgtaccaggccct
gtgggggacaatggaaccccaggcccttctggaccagcacctatcacagacttatatggg
ctcccaggggaccctggaaagcttggtctgcttggtttttctggtgcaagaggagaccct
ggatatcctggaccaaaaggcattgatgggagggatggtgacccaggaaaacatgggcct
agaggtcccccaggtgatcgtggagccgatgacctatattcagtaggaggaccaggccca
tctggacccaggggagatattgggagcatgggtttaccaggtccccatggaataaaggga
gttctgggttaccatggaggcctgggacaagatggtagacccggtccatacgggcctaaa
ggaactaaaggagagcccagttatgctcaaccaggccgcctaggaccacctggacaaaag
ggcgagccagccttgtctaacagccatggttccaagggagagagaggctctcctggttgc
gcaggtcgtccaggctcccaagggcccactggagccaatggagacccaggacatcatgga
catcatggacccctaggtcctgcagggccacctggtaccgatggtcctccaggcccccca
ggacccactccgtcatatggagctccaggacaaccagggttacctggccctcctggtccc
tgtggtcctaaaggtaaccaggggagcgatggcattcctggacctgctggtcagaaggga
gagacattgattgtggggttgactcctggcctacgtggagagaatggacagccaggtcca
aagggagatgtgggttttcctggccccaccattttggggcccccagggtttactggagac
caaggcattgaaggaccccaaggtcctcgtggtgagccggggcttggagccgtttgtctc
aaagggctgaaaggaaacactggtcctcatggcagacctggaagccctgggcaacagggt
ccacggggacagccagggtctggaggttatggatataaaggggacaggggagacacaggc
tctccagggggcagaggctttgacgggcccagaggggacccagggcttccagggccatgg
ggaccaagagccatccctggacctccaggaccaataggtgacccaggtcaccctggaccc
ccaggattccccggtgagacgggtgatcctagttataaccccggcacgaaaggaccaaat
ggggccaaaggctggccaggaccaccaggtcgtccaggacttgacgtgtctggacaagtg
agattccatcaaggggatccaggccgacttggtcaccccgggaaccaaggatttccaggt
ccaattgggccgccaggacggccaggatttgcaggccccacaggccctaagggtcagcat
ggacacagccctccaggcctgcctgggttccctggacgcaagggagacaagggatcacca
ggacggacagggccggtgggctaccaagggtctccgggtcagaagggttctcgtggcccg
tggggctccagcacggcaggcctggctgacagtttcctgctggcccgacacagccagacg
atcagagtgcctgactgccccagaggtaccaccctcatctactctggatactctctgctc
ttcatcaatggcaatgagagagcccacggacaagacctaggctccatgggcagctgccta
ccacgtttctccaccatgcccttcctgttctgtgacacggacaacacctgtcgctacgcc
gcccgcaacgactactcctattggctgtcgacggagaagcccatgccgcgcagcatggac
ctaatcagaggagatgagatagggagctacatcagcaggtgttcagtgtgtgagggcagc
tccaatgccatcgccatccacagccagaccacccagaccccagactgtcctcgtgactgg
gaatccctctggactggatactcctttgtcatgcaaacgggtgcgggtgctgaggggtcg
gggcagccgctagtctccccaggctcgtgcctggaacacttccgccaggtccccttcatc
gagtgccacggccggggaacctgcaactacttcccagactcctacagctactggctggcc
tcactcgacccgaatcgcatgttcagtaagcctgtgccccagactgtgaagggacgtctt
ctagagaatgtcatcagtcgctgccgcgtctgcaggaaaccctattga
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