Salmo salar (Atlantic salmon): 106568707
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Entry
106568707 CDS
T04363
Name
(RefSeq) collagen alpha-3(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04382
Cornified envelope formation
sasa04510
Focal adhesion
sasa04512
ECM-receptor interaction
sasa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106568707
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106568707
09142 Cell motility
04820 Cytoskeleton in muscle cells
106568707
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
106568707
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sasa04147
]
106568707
00536 Glycosaminoglycan binding proteins [BR:
sasa00536
]
106568707
Exosome [BR:
sasa04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
106568707
Glycosaminoglycan binding proteins [BR:
sasa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106568707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
106568707
NCBI-ProteinID:
XP_013994756
UniProt:
A0A1S3LV83
LinkDB
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Position
ssa14:8122243..8196121
Genome browser
AA seq
1655 aa
AA seq
DB search
MRTAWLCFVFLGMMLLGIEAKDCACTGKSRCHCEGVKGNKGEKGYSGETGPPGSVGYPGS
EGHPGTVGPKGDVGPHGPPGQYGNRGPEGKEGFSGTPGLPGIPGLQGPMGQQGAPGCNGT
EGNRGSTGPPGLHSSDGLRGSPGAPGPKGESQTIGSGQPGPRGRDGDQGVPGSPGPTGPS
GEAGLRGVEGLIGLPGAPGLKGQEGRRSSIPGPRGLKGHQGPPGVPGPKGIKLYAHAPFD
MKGEIGELGEKGCKGSPGYAGHIHFKGAKGDQGDLGTEGRPGKDGERGLAGYKGRKGNHG
SAGPDGIPGPWGQKGVQGQDGDPGEVTMIGEAVFGSGGAKGQQGLAGSPGPTGVTGPPGN
TGFQGPPGPPAPNYGDDPYNRGAKGRSGPKGDKGDQGPIIHGEPGREGFPGTTGESGDPG
PPGPSGDSGNLKGFIGPPGEKGAKGLTGEQGYSGQYGLKGQKGEVCRLCTGKGSGEPGPP
GPPGQPGFPGFNAGPGPKGEPGFKGPSGPPGRPGPHGPSGVPGPPGLKGNPGSHNHHGIK
GEKGSPGLAGRSGQDGNQGNPGFPGRKGQQGPKGDPYYGPPGLKGDVGVPGHPGPQGYQG
PDGSPGPVGIGPLGHPGSKGNSGVPGLPGIAGYPGQKGEPSKRVAYQGVPGPPGQMGLPG
LQGPPGPRGSAGLQGVDGYQGEKGDSGGFSTLGGRGPTGPKGDKGHPGPPGTSGSGSPGR
PGTLGIPGEPGSKGDVGFGAPAPVGPKGFQGGVGARGPPGDPGLLGRPGNPGPIGLNGSP
GPKGSKGGVGSQGPPGYAHTDCTGATTGTPGSPGRPGPPGLNGQTGALGAPGAPGFGRSG
PAGDPGPPGVSGPGVQGLDGQKGGRGRDGLTGPPGPRGDPGLDGRSGSGPDGFPGSGGHP
GPRGSDGRDGDKGHRGVPGPVGDNGTPGPSGPAPITDLYGLPGDPGKLGLLGFSGARGDP
GYPGPKGIDGRDGDPGKHGPRGPPGDRGADDLYSVGGPGPSGPRGDIGSMGLPGPHGIKG
VLGYHGGLGQDGRPGPYGPKGTKGEPSYAQPGRLGPPGQKGEPALSNSHGSKGERGSPGC
AGRPGSQGPTGANGDPGHHGHHGPLGPAGPPGTDGPPGPPGPTPSYGAPGQPGLPGPPGP
CGPKGNQGSDGIPGPAGQKGETLIVGLTPGLRGENGQPGPKGDVGFPGPTILGPPGFTGD
QGIEGPQGPRGEPGLGAVCLKGLKGNTGPHGRPGSPGQQGPRGQPGSGGYGYKGDRGDTG
SPGGRGFDGPRGDPGLPGPWGPRAIPGPPGPIGDPGHPGPPGFPGETGDPSYNPGTKGPN
GAKGWPGPPGRPGLDVSGQVRFHQGDPGRLGHPGNQGFPGPIGPPGRPGFAGPTGPKGQH
GHSPPGLPGFPGRKGDKGSPGRTGPVGYQGSPGQKGSRGPWGSSTAGLADSFLLARHSQT
IRVPDCPRGTTLIYSGYSLLFINGNERAHGQDLGSMGSCLPRFSTMPFLFCDTDNTCRYA
ARNDYSYWLSTEKPMPRSMDLIRGDEIGSYISRCSVCEGSSNAIAIHSQTTQTPDCPRDW
ESLWTGYSFVMQTGAGAEGSGQPLVSPGSCLEHFRQVPFIECHGRGTCNYFPDSYSYWLA
SLDPNRMFSKPVPQTVKGRLLENVISRCRVCRKPY
NT seq
4968 nt
NT seq
+upstream
nt +downstream
nt
atgaggacagcatggctttgtttcgtgttcctggggatgatgctgctgggaattgaggcg
aaggattgtgcgtgtactgggaagtcgaggtgtcactgtgaaggagtcaaaggcaataag
ggagaaaagggttactcaggagagactggtccacctgggtcggttggctatccgggctca
gagggtcaccctggaacagtgggaccaaagggggacgtgggccctcatggacctccagga
caatatggcaatcggggacctgagggtaaagaaggattttctgggacaccaggtctaccg
ggcatcccaggccttcaaggaccaatgggccaacaaggtgccccaggatgcaatggaaca
gaggggaacaggggttcaactggtccacctggactccacagcagtgatggattaagaggt
tcacctggagcgcctggaccaaagggtgaatctcaaacaattggaagtggccaacctgga
cctagaggaagagacggtgaccagggtgtccctgggtcaccaggaccgacgggaccatca
ggggaagcaggacttcgtggggttgagggattgataggcctacctggagcaccaggatta
aagggtcaagagggacgccgctctagtatccctggccctcgtggtctaaagggacaccaa
gggccccctggagtcccgggaccgaaagggatcaaactatacgcccacgctcccttcgat
atgaagggagagataggtgaactgggtgagaagggctgtaagggttcacctggttatgct
ggccacatccattttaaaggagcaaaaggggaccaaggggaccttggtactgagggaagg
ccagggaaggatggggaacgaggactcgctggatataaggggagaaaggggaatcacggt
tcagcaggtcctgatggaatccctggaccatggggacagaaaggcgttcagggtcaagat
ggtgaccccggggaggtgaccatgattggcgaggctgtgtttggctccgggggtgccaaa
ggacaacaagggttggctggctctccgggtcccactggagttactggtcccccaggtaac
accggtttccaggggcctcctggacctccagctcctaactatggagatgatccctacaat
cgcggagcgaagggccgcagtggacctaaaggagataaaggagaccaaggacccatcatc
cacggcgagccaggcagagagggctttccaggaacaactggggaaagtggagaccctgga
cccccaggaccatctggagactcaggaaatcttaagggctttataggacctccaggggaa
aagggagccaagggcttgacaggcgaacaagggtacagtggccaatatggtttaaaaggt
cagaaaggagaggtctgtaggttgtgtacaggaaaagggtctggagagccgggaccccca
ggaccccccggtcagcctggattcccaggctttaatgcaggaccagggcccaaaggagag
ccaggattcaaaggcccatcaggaccacctggacgaccgggtccccacggcccctcaggt
gttccagggcccccggggctgaagggaaatccaggttcccacaaccaccacgggataaag
ggagagaaaggatccccaggactagctggcagatcagggcaggatggcaatcaagggaac
cctggcttccctggacgcaagggccaacaaggccccaagggtgatccgtactatggcccg
ccgggtctgaagggagatgttggtgtcccaggccatcccggaccacagggataccaagga
ccagatgggtcgccaggtccagtaggcataggacctcttggccacccaggatccaaaggc
aatagtggggtaccaggtctacctggcatagctggctacccaggtcagaaaggtgagccc
agcaaaagagtggcttaccagggagtcccaggcccaccaggacagatggggctgcctggg
ttacagggccccccaggtcctcgtggtagtgctggtttacaaggagtagatggttaccag
ggggagaaaggagacagtggtggattctccaccctgggaggacgaggacccactggaccg
aaaggtgacaaagggcacccgggacccccaggtacctctggtagcggctctcctggacga
cccggcacattgggaatccctggggaaccagggtcaaagggtgatgttgggtttggggcc
ccagctccagtcggccctaaaggtttccaaggtggtgttggggcccggggacctccagga
gacccagggctactgggacgaccagggaatccaggaccaataggcctcaatgggtcacca
ggccccaaaggaagtaaaggtggagtaggttcccaaggaccacctggttacgcacatact
gactgtacaggagccacaaccggaacacctggttcaccaggcagacccggacctccaggt
ttaaatggacagacgggtgcgcttggggcccctggcgctccaggttttggacgttcaggc
ccggctggtgaccctgggccccctggggtctccggacccggagtgcagggactagatgga
cagaagggaggcagagggagagatgggttaacaggcccaccaggtcctcgaggtgatcct
gggctggatggaagatctggatcgggccctgacggattccctggatctggaggacatccc
ggccccagagggtcggatggccgtgatggggataaaggccatagaggtgtaccaggccct
gtgggggacaatggaaccccaggcccttctggaccagcacctatcacagacttatatggg
ctcccaggggaccctggaaagcttggtctgcttggtttttctggtgcaagaggagaccct
ggatatcctggaccaaaaggcattgatgggagggatggtgacccaggaaaacatgggcct
agaggtcccccaggtgatcgtggagccgatgacctatattcagtaggaggaccaggccca
tctggacccaggggagatattgggagcatgggtttaccaggtccccatggaataaaggga
gttctgggttaccatggaggcctgggacaagatggtagacccggtccatacgggcctaaa
ggaactaaaggagagcccagttatgctcaaccaggccgcctaggaccacctggacaaaag
ggcgagccagccttgtctaacagccatggttccaagggagagagaggctctcctggttgc
gcaggtcgtccaggctcccaagggcccactggagccaatggagacccaggacatcatgga
catcatggacccctaggtcctgcagggccacctggtaccgatggtcctccaggcccccca
ggacccactccgtcatatggagctccaggacaaccagggttacctggccctcctggtccc
tgtggtcctaaaggtaaccaggggagcgatggcattcctggacctgctggtcagaaggga
gagacattgattgtggggttgactcctggcctacgtggagagaatggacagccaggtcca
aagggagatgtgggttttcctggccccaccattttggggcccccagggtttactggagac
caaggcattgaaggaccccaaggtcctcgtggtgagccggggcttggagccgtttgtctc
aaagggctgaaaggaaacactggtcctcatggcagacctggaagccctgggcaacagggt
ccacggggacagccagggtctggaggttatggatataaaggggacaggggagacacaggc
tctccagggggcagaggctttgacgggcccagaggggacccagggcttccagggccatgg
ggaccaagagccatccctggacctccaggaccaataggtgacccaggtcaccctggaccc
ccaggattccccggtgagacgggtgatcctagttataaccccggcacgaaaggaccaaat
ggggccaaaggctggccaggaccaccaggtcgtccaggacttgacgtgtctggacaagtg
agattccatcaaggggatccaggccgacttggtcaccccgggaaccaaggatttccaggt
ccaattgggccgccaggacggccaggatttgcaggccccacaggccctaagggtcagcat
ggacacagccctccaggcctgcctgggttccctggacgcaagggagacaagggatcacca
ggacggacagggccggtgggctaccaagggtctccgggtcagaagggttctcgtggcccg
tggggctccagcacggcaggcctggctgacagtttcctgctggcccgacacagccagacg
atcagagtgcctgactgccccagaggtaccaccctcatctactctggatactctctgctc
ttcatcaatggcaatgagagagcccacggacaagacctaggctccatgggcagctgccta
ccacgtttctccaccatgcccttcctgttctgtgacacggacaacacctgtcgctacgcc
gcccgcaacgactactcctattggctgtcgacggagaagcccatgccgcgcagcatggac
ctaatcagaggagatgagatagggagctacatcagcaggtgttcagtgtgtgagggcagc
tccaatgccatcgccatccacagccagaccacccagaccccagactgtcctcgtgactgg
gaatccctctggactggatactcctttgtcatgcaaacgggtgcgggtgctgaggggtcg
gggcagccgctagtctccccaggctcgtgcctggaacacttccgccaggtccccttcatc
gagtgccacggccggggaacctgcaactacttcccagactcctacagctactggctggcc
tcactcgacccgaatcgcatgttcagtaagcctgtgccccagactgtgaagggacgtctt
ctagagaatgtcatcagtcgctgccgcgtctgcaggaaaccctattga
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