Salmo salar (Atlantic salmon): 106569208
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Entry
106569208 CDS
T04363
Name
(RefSeq) collagen alpha-1(XVIII) chain-like
KO
K08135
collagen type XV alpha
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
sasa00535
]
106569208
Proteoglycans [BR:
sasa00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
106569208
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Laminin_G_2
DUF1554
NigD_N
Motif
Other DBs
NCBI-GeneID:
106569208
NCBI-ProteinID:
XP_013995809
UniProt:
A0A1S3LYP9
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Position
ssa14:complement(25717108..25765274)
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AA seq
1397 aa
AA seq
DB search
MALLRLYSLLLLMAPVHGQWWSAFLGKAQEMTTQPPTTVPTTTQVLWTTEGTEVGQVGTQ
MEVFTTAPVQSTLLQRIQEPAGAGTTEIKPKAKKIYLKMWKSRERGSTGHLDLTELIGVP
LPPSVSFITGYEGFPAYGFGPDANIGRLTKTFMPDPFFRDFAIIVTIKPSSKQGGVLFAI
TDAQQKVVQLGLALTPVEDETQRIQLYYTEGGEESSRSQQVASFKLPDMRNKWTRFTLSV
QDQEVRLYMDCDDFQAETFHRSSRQLTFEPSSGIFVGNAGGTGLEKFVGSIQQLVIKPDP
RAAEEQCEEDDPYASGDGSGDDTLDDHETKDKLMKNMERKKETARPEDMLSVPVRAPPTE
SPELELDENTVHLNPTNKAHTHQEMLLKGGEETRQTEEPGEKSGDGRPLSHGQKGERGEP
GPMGPAGPRGPPGPSTPSEDRAGHGQPGPRGPQGPSGAPGVPGKDGQPGSKGEDGDPGQR
GPHGFPGLAGEVGVKGDKGDTGVGLPGPPGPPGPPGPLKSHSVPYGEDALGSGFGDLDDT
ELIRGSPGPPGPPGQPGPPGPTRFFEASEGLFPGQPGPSGPPGRDGLVGKPGPPVIEDWF
SGSGSGSAFGSEFGSGLFDSGLGSGEGPTGLDGDAGLTGLKGLKGEQGLAGPNGPKGESG
DPGLTGATGPRGPEGKKGDPGLRGLPGPPGPPGGGFFVEDVEGSGKNDMVLGTELRSPQG
PPGLPGPAGPKGEDGKDGAPGLSVKGEPGASGPEGLQGLAGLPGARGLKGDKGDPGPKGE
CGPDGHNVPGPPGPPGPPGPIINLQDLLLNNTEGMFNITEIRGPPGPMGPEGEPGRAGFP
GPRGPKGDSGLPGFQGPPGMKGAKGEAGVTIAADGTVLSSVRGPRGPKGIKGERGFPGAY
GVMGPIGPTGQKGEYGFPGRPGRPGMAGKKGDQGDAIGQPGLPGPPGPPGPPGPVTGLNG
TVFPVRPRPFCKTPVNGSKGSSQGGRRGNGGAKGEKGEIGLTGMPGEPDDILPEGFVGEK
GDVGYEGMKGDQGEPGLPGPPGLPGRSGLVGPKGESVVGTVGHPGAPGEPGVPGIGRPGS
RGPPGPAGPPGPPPVYGSAVSIPGPPGPPGPPGITGHENPVSTYRNTNSLMRESHRAAEG
SMAYVSDKGELYVRTRDGWRKVQLGELILIPAESPSSAVSQALSRPGDRTRPHRPHSQEL
VGTSYVPNYNVLPHTVHSVPALHLVALNAPFSGDMRGIRGADFQCYQQARAMGLTATYRA
FLSSHLQDLATIVKKGDRYNMPVINLKGEVIYSSWMNIFSGNGGVFDPSIPIYSFEGRNV
MTDPTWPQKLVWHGSSTVGIRMTTNYCEAWRAGDMAVTGQASLLQTGRLLGQHTRSCSNH
FIVLCIENSYIDHRRSN
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atggctctcctgcgtctttatagtctgctgctgctcatggctcctgttcatggccagtgg
tggagtgctttcttggggaaagcacaggagatgaccacacagccccccaccaccgtcccc
acaaccacccaggtattgtggaccacagaagggacagaggtgggccaggtggggactcag
atggaggtcttcaccactgcacctgttcagagtaccctgctacagcgcatccaggagcct
gctggtgctggaaccacagagatcaagcccaaggctaagaaaatatatctgaaaatgtgg
aagagtcgtgagcgtggctctacaggacacctagacctgaccgagttgatcggagttcca
ctccctccctctgtctccttcatcaccggctatgagggcttcccggcctacggcttcggg
cctgacgccaacattggacgtctcaccaagaccttcatgcccgatcctttcttcagggac
tttgccatcatcgtcaccatcaagcccagcagcaaacagggaggggtgctgttcgccatc
actgatgcccagcagaaggtggtgcagctggggttggcactgacgcccgtggaggacgag
acccagaggattcagctgtactacaccgaggggggcgaggagtcctcacgcagccaacag
gtggcgtcctttaagttgcctgatatgaggaataagtggacgcgcttcactctgtcggtg
caggaccaggaggtacgcctctatatggactgtgatgacttccaagcagagaccttccac
aggagcagccgccagctcacctttgaacccagctcgggcatcttcgtgggcaatgctgga
ggaactggcctggagaagtttgtgggctctatccagcagctggtgatcaagccggacccc
agggcagcagaggagcagtgtgaagaggatgatccctatgcttctggggatgggagtggg
gatgacacgttggatgaccatgaaacaaaggacaagttgatgaagaacatggaacgaaaa
aaggaaacagcacggccagaggacatgctaagcgtgccagtgagagccccgcccacagag
tctccagagttggagctagatgagaacactgttcacctgaaccccacaaacaaggcacac
acacatcaggagatgctgctcaaaggtggggaagaaacccgtcagacagaggagccaggg
gagaaatcaggggatggcaggcctcttagccacggacagaaaggagagcgaggagagcct
gggcctatgggtcctgctggcccccgtggcccccctggcccttccactccctctgaggat
agggctggacacggccagccaggaccaaggggccctcaggggccttcaggggcccctggg
gtgccagggaaggacggacagccgggaagcaagggtgaagatggagacccaggacaaaga
ggacctcatggattcccaggtttggcaggagaggttggagtcaaaggagataagggggac
acaggagtaggcttgccggggcctccaggccctcccggacctcccggacctctcaaatct
cacagtgtaccgtatggagaggatgcactcggctctggctttggggaccttgacgataca
gaattgatcagaggttcccctggtcctcccggccctccaggtcaacctggcccgcctggt
cccacccgtttcttcgaagcctccgagggcttgttccctggacaaccaggtccttcaggg
ccacctggcagagacggccttgttgggaaacctggaccaccggtgattgaggattggttt
agtggttctggctcgggctctgcgtttggctctgagtttggctcagggttgttcgactct
gggcttggttctggcgagggtcctactggtctggatggggatgctgggctgacagggctt
aaaggtctgaagggtgaacaaggactagctggaccaaacggaccaaagggtgaatcaggt
gacccagggctgacaggagctacaggaccgaggggaccagaggggaagaagggcgaccct
ggacttcgggggctgcctggcccccccggacccccaggaggaggattctttgtcgaggac
gtggaggggtctgggaagaatgacatggtccttggcacagaactcagaagccctcaggga
cctcctggtctccctggccctgcaggaccaaagggtgaagatgggaaggatggggctcct
gggttgtcagtgaagggtgagcctggtgcttctggacctgagggactccaagggctagct
gggttaccaggcgccaggggattgaaaggagacaaaggtgatccaggaccaaagggggag
tgtggtcctgatggacacaatgtacctggtcctcctggtcctcccgggcctccaggacca
atcatcaatctgcaggatctcctcctgaacaatacagagggcatgtttaacatcactgag
atacgtgggccccctggcccaatgggccctgaaggcgagcctggcagagcaggattccct
ggcccaagaggaccaaagggtgacagtgggcttcctggttttcaaggtccaccaggaatg
aagggtgcgaaaggggaagctggtgtcactatcgctgccgatggaactgtgttgtcaagt
gtcaggggccctcgggggccaaaaggaatcaagggtgaacgtggcttccctggagcttat
ggtgtcatgggaccaattggaccaactggacaaaagggagaatacgggttccctggtcga
ccggggcgacctggaatggcagggaagaagggagaccagggagatgccattggtcaacca
ggacttcctggtcctcctggccctcccggacccccaggaccagtaacaggactcaacgga
acagtttttccggtccgtcccagaccgttctgcaaaacaccagttaatggcagcaaaggg
tcgtcacaaggtggcaggagaggaaacggaggtgctaaaggggaaaagggagagattgga
cttactggaatgcctggagaaccagatgatattctaccagaaggctttgtaggagaaaaa
ggagatgtgggctatgaaggaatgaaaggagaccagggtgaacctgggttgcctggccct
ccaggtcttcctgggagatcaggccttgtggggccaaaaggtgagtccgtcgttggcact
gttggtcatcctggagctcctggtgaaccaggggttcctggcattggacgaccaggctct
cgggggccccctggccctgccggaccccctggaccaccccctgtctatggctcagcagtg
agtattcccggcccacctgggcctcccggtcctccagggattactggccatgaaaacccg
gtgtccacatacaggaacaccaacagtctgatgagggagagccaccgtgctgcagagggc
tcaatggcctacgtctcagacaagggagaactctatgttagaactagagatggctggcgc
aaggttcagcttggtgagctcatcctcatcccagcagagagcccatcctctgcagtgtcc
caggccctgagcagaccaggagatcgcaccagaccccacaggccacacagccaggaacta
gttggaactagctacgtgcccaactataatgtcctacctcatacagtacactcagtacca
gcgctgcacctggtggccctgaatgctccgttctctggggacatgcgtggcatccggggg
gcagacttccagtgctaccagcaggcccgagccatgggtctcactgccacctacagagcc
ttcttgtcctcacacctccaggacctggccaccatcgtcaagaagggagaccgctacaac
atgcccgtcatcaacctcaagggagaggtgatctatagcagctggatgaacatcttctct
gggaacggaggcgtgtttgacccatccatccccatctactcctttgaaggacggaacgtc
atgacggaccctacttggcctcagaagctggtgtggcatggctccagtacggtgggcatc
cgtatgaccactaactactgtgaggcatggcgggcgggtgacatggcggtgacgggccag
gcctcgctcctccagacaggcagacttctgggccaacacacccgcagctgctccaaccat
ttcatagtgctgtgtattgagaacagctacattgaccacaggaggtctaattaa
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