Salmo salar (Atlantic salmon): 106569579
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Entry
106569579 CDS
T04363
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03030
DNA replication
sasa03410
Base excision repair
sasa03420
Nucleotide excision repair
sasa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
106569579 (lig1)
03410 Base excision repair
106569579 (lig1)
03420 Nucleotide excision repair
106569579 (lig1)
03430 Mismatch repair
106569579 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sasa03032
]
106569579 (lig1)
03400 DNA repair and recombination proteins [BR:
sasa03400
]
106569579 (lig1)
Enzymes [BR:
sasa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
106569579 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
106569579 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
106569579 (lig1)
DNA replication proteins [BR:
sasa03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
106569579 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
106569579 (lig1)
DNA repair and recombination proteins [BR:
sasa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
106569579 (lig1)
NER (nucleotide excision repair)
Other NER factors
106569579 (lig1)
MMR (mismatch excision repair)
Other MMR factors
106569579 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
106569579
NCBI-ProteinID:
XP_013996548
UniProt:
A0A1S3M043
LinkDB
All DBs
Position
ssa14:40001308..40023128
Genome browser
AA seq
1088 aa
AA seq
DB search
MQRSISSFFQPKTGKEKESKKCDGPVKDKPVKDKPEPVKRPLKVQNGVHKEPDSPVKKFT
KRSRQILDSDDDDEAQAPAGIEQEQEDKAVQPKDEVFKAVTTPLSPASPVTPAASATPVT
PSATPVTPAASPTPGTPDTPTSISPSGIPKRRTARKQFPKRKLDSRSGSEKEEEEQGPQN
KRAKVEETQDSTENEEETMDVGGENSVDKPEVAQNNPEEKETDEEKTKDGEKEKALDVKE
TATEKAEEEKGKSEKAKERSPKGQKVKERSPKERSPKGQKVKERSPKERSPKSQKVKERS
PKERSPKGQKVKERSPKERSPKGQKVKERSPKERSPKGQKVVKDDKEKGSPKNERKAVKE
GKDLKEEKVSECPQATKAPTISSFFAPRKAAVKMERPEKSEGDGKEKSGECIKEEATVSR
TTEDVKDKKGEKTAQAQYDPSRPNYHPVDHACWRQGERVPYLAVARTFEKIEEDSGRLRN
IETLSNLLRSVIVLSPEDLLCCVYLCLNQLGPAYMGLELGVGETVLMKAVAQATGRQLDK
IKAEAAEKGDLGLVAESSRNNQRIMFQPANLIAGGVFNKLKDIGNMSGNSAMNKKIDIIK
GLFVACRFSEARYIVRSLAGKLRIGLAEQSVLSALSQAVCLTPPGQDFPPAVIDAGKGMS
AEKQKAWIEEKSLILKQTYCEMPNYDVIIPVILKEGIDQLPNHCKLTPGVPLRPMLAHPT
KGVGEVMKRFDEAAFTCEYKYDGERAQIHILENGEVRIFSRNQEDNTTKYPDIISRIPTV
KNESVVSCVLDSEAVAWDREKKQIQPFQVLTTRKRKDVAAADIKVQVCVYAFDLLYLNGE
SLVKQSLSCRRALLKESFQEKEGEFVFARAIDSDNTDAIAEFLEQSVRDSCEGLMVKTLE
KDATYEIAKRSHNWLKLKKDYLDGVGDTIDLCVIGAYLGKGKRTGTYGGFLLACYDEDNE
EFQSVCKIGTGFKDEDLEQHYKFLKEHILPKPRPYYRVDQSTEPDLWLDAVQVWEVKCAD
LSLSPIYKAGMGLCDPEKGISLRFPRFLRIRDDKKPEEATSGGQIADLYRKQQVVQNQGD
KADLEDYY
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagcatatcatctttctttcagcccaaaacgggcaaagagaaggagagcaaa
aaatgtgatggcccggtgaaagacaagccggtgaaagacaagccagaaccagtcaaaagg
cctctcaaagttcagaatggggtccataaagagcctgattcgccagtaaagaagttcact
aaacgcagtcgtcagatcttggacagtgatgatgatgatgaggctcaggctccagccgga
atagaacaggagcaagaggacaaggctgtgcaacccaaggatgaagtattcaaggctgtt
accacccccctgtcccccgcatctccagtgaccccagcagcatccgccactccagtgacc
ccatccgccactccagtgaccccagccgcctcccccacccctggaaccccagacaccccc
acttccatctcaccctccggaatacccaaacgccgcaccgcacggaagcagttccccaag
agaaagctggacagcaggagtggcagtgaaaaggaagaggaagaacaaggaccgcagaat
aaaagagcaaaggttgaggagacacaggacagcaccgagaatgaagaggaaacgatggat
gtgggaggagagaacagtgtggataagcctgaggtggcgcagaacaacccagaggagaaa
gagacagatgaagagaagaccaaagatggagagaaggagaaagcacttgatgtgaaagag
actgcgactgagaaggctgaggaggaaaaaggaaaaagtgaaaaggctaaagagagaagt
cctaagggtcaaaaagttaaagagagaagtcctaaagagagaagtcctaagggtcaaaag
gttaaagagagaagtcctaaagagagaagtcctaagagtcaaaaggttaaagagagaagt
cctaaagagagaagtcctaagggtcaaaaggttaaagagagaagtcctaaagagagaagt
cctaagggtcaaaaggttaaagagagaagtcctaaagagagaagtcctaagggtcaaaag
gtggtaaaggatgacaaagaaaaaggaagtcctaaaaatgaaaggaaggcagtgaaggag
gggaaagacttgaaagaagagaaagtgtcagaatgcccccaagccacaaaagcccccacc
atcagcagtttctttgctcccaggaaggctgctgtaaagatggagagaccagagaagagc
gagggagacggaaaggagaagagcggggagtgtataaaggaagaggcgacggtgtcccgt
accacggaggatgttaaagacaagaaaggagagaagactgcccaggcccagtatgacccg
tccagacccaactaccacccagtagaccacgcctgctggaggcagggagagagggtcccg
tatttggctgttgcacgcacctttgaaaagattgaggaagattctggcagattgaggaac
attgaaacattatcaaatctcctacgctctgttatcgtcctctctccagaggacctgctg
tgctgcgtctacctgtgtctcaatcagctgggtcctgcttacatggggctggagctggga
gtgggagaaactgttcttatgaaggctgtcgcacaagctactgggcgacagttggacaaa
atcaaggcggaggctgcggagaagggagacttgggtttggtggctgagagttcccgtaac
aaccagagaattatgttccagccagccaatctgattgcggggggtgtgttcaacaaactg
aaagacatcgggaacatgagtgggaattctgccatgaataagaagattgacatcatcaaa
ggtctctttgtagcatgtcgtttctctgaagccagatacattgtcaggtcgctggcaggg
aagctgaggattggcttggctgaacagagtgtactgtctgccctgagtcaggccgtgtgt
ctgactcctccaggacaagacttccctccggcggtgattgacgcggggaaaggaatgagt
gcagaaaaacagaaagcttggatagaagagaagagccttatcctcaaacagacttactgt
gagatgccaaactatgatgtcatcatcccagtcattctgaaggaggggattgaccaactc
cccaaccactgcaaactcactccaggtgtaccgttgaggcccatgctggctcaccccacc
aaaggtgtaggagaggtgatgaagagatttgatgaagccgccttcacctgcgagtacaag
tatgatggagaacgagcacagatccatatcttggagaacggggaagtgcgtattttcagt
cgcaaccaggaggataataccaccaaatatcctgacatcatctctcgcattcctacggta
aagaatgagtctgtggtatcctgtgtgttggactctgaggcagtagcttgggacagagag
aagaaacagatccaaccattccaggttctcaccacacggaagagaaaggatgtggctgca
gctgatatcaaggtccaagtgtgtgtgtacgccttcgacctgctttatctcaatggagag
tctctagtgaagcagtccttgtcatgtcgcagggctctgttgaaggagagcttccaggag
aaggagggagagtttgtgttcgcccgtgccatcgactcagacaacacagacgccatcgct
gagttcctggagcaatcggttcgagactcctgtgagggactcatggtgaagactctggag
aaagatgccacctatgaaatcgccaagcgctctcacaactggctcaagctgaagaaggat
tatctggatggcgtgggggacacgattgatctgtgtgtgatcggagcgtatctggggaag
gggaagagaacagggacctatggaggctttctgctcgcctgctacgatgaggacaatgaa
gagttccagtcagtctgcaagattgggacaggtttcaaggatgaagatttggagcaacat
tacaaattcttaaaggagcatattttgccaaagccccgcccctattaccgtgtggaccaa
tcaactgagcccgacttgtggctcgatgccgtgcaagtatgggaagtgaagtgtgccgac
ctatcgctgtcgccgatctacaaggctggcatgggattgtgtgacccagagaagggcatt
tctcttcggttcccacgcttcctgaggatcagagatgataaaaagccagaggaggccact
tcaggaggacagattgctgatttatacaggaagcagcaggttgttcagaatcagggcgac
aaagctgaccttgaggactactactga
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integrated database retrieval system
