Salmo salar (Atlantic salmon): 106569602
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Entry
106569602 CDS
T04363
Symbol
lsm7
Name
(RefSeq) LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03018
RNA degradation
sasa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106569602 (lsm7)
09123 Folding, sorting and degradation
03018 RNA degradation
106569602 (lsm7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106569602 (lsm7)
03041 Spliceosome [BR:
sasa03041
]
106569602 (lsm7)
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106569602 (lsm7)
mRNA degradation factors
5'-3' decay
Lsm complex
106569602 (lsm7)
Spliceosome [BR:
sasa03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
106569602 (lsm7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
GPAT_C
DUF150_C
Motif
Other DBs
NCBI-GeneID:
106569602
NCBI-ProteinID:
XP_013996601
UniProt:
B9EP94
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All DBs
Position
ssa14:complement(40935079..40938676)
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AA seq
107 aa
AA seq
DB search
MADRNKEGEKKKKESIFDLSKYIDKQIRVKFQGGREASGVLKGFDPLLNLVLDSTIEYLR
DPDDQFKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDG
NT seq
324 nt
NT seq
+upstream
nt +downstream
nt
atggcggacagaaacaaggaaggagagaagaaaaagaaggagagcatctttgacctgtcc
aagtacatcgataaacaaatccgtgtcaagttccagggaggacgagaggccagtggagtc
ctaaaggggtttgaccccctgttgaacctggtattggacagcaccatcgagtacttgcga
gaccctgacgaccagttcaagctgaccgaggacacgcgacagctgggtctggtggtgtgt
cgagggacctcagtggtgctcatctgtcctcaggacggcatggaggccatccccaacccc
ttcatacaacagcaggacggatag
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