Salmo salar (Atlantic salmon): 106570217
Help
Entry
106570217 CDS
T04363
Name
(RefSeq) collagen alpha-1(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04510
Focal adhesion
sasa04512
ECM-receptor interaction
sasa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106570217
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106570217
09142 Cell motility
04820 Cytoskeleton in muscle cells
106570217
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
sasa00535
]
106570217
Proteoglycans [BR:
sasa00535
]
Extracellular matrix (ECM) proteoglycans
Others
106570217
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
106570217
NCBI-ProteinID:
XP_013997778
UniProt:
A0A1S3M3H4
LinkDB
All DBs
Position
ssa14:65493344..65529977
Genome browser
AA seq
951 aa
AA seq
DB search
MEHHCALLTRKRPQHPAMLLYPSTCMALLSLLLSPALGQLDLNRLDGDTAVCPPMRNGQD
DLPGFDLITQFQLDVIPLKGVRKVEGSTPLQVAYRLDKEANFQIPTRLNFPRGFPGEYSV
MVTFRMIKNTINKVWNVWQVVDEDGRKQAGLRLNGDQQALEYFLMGQDGNLQTVTFPGLS
VLFNTKWHKVMIGVERDQVTLYVDCQPVDKKPIKGKGPVNTEGDTLIGRLDTDADASVVF
ELQWMLIHCDPKRANRENCQELPITEMYANAEPDPKPIPGPPGPTGPEGPRGPHGEDGRD
GRDGLPGSPGSAGTSGAKGDKGEIGLPGHRGMPGLPGAAGMPGSMGPRGPVGERGLQGFP
GPAGSPGPETAGPPGPPGKAGTPGDEGNIGPEGAPGPRGGLGLPGPPGQPGPPGPVGPPG
AGKAEGSGEDCPAACPAGPQGSPGLPGIKGHKGLPGTDGAAGEAGQKGEPGPSGVQGLPG
KMGDDGQRGPIGFPGTLGEKGDRGPPGFNGIPGPTGPPGSPGVEGSRGRQGLEGEKGDDG
AIGPQGDQGPVGAKGDTGTPGKDGMDGLPGVDGAKGEAGIPGTVGIRGMVGIPGLPGKQG
LVGAGGAKGDTGDDGPVGPIGVPGKTGATGPAGEDGQPGDKGASGETGKQGPVGVTGDTG
IQGDKGDKGDTGEKGLKGHTGYNGDQGPIGPVGPKGSKGDPGLTGDAGVKGDQGPPGVPG
IKGEVGEKGMKGYTGEDGRPGQPGHEGLTGPQGANGLEGERGLTGSPGPRGLPGPKVNDI
KLRELCSAIVEEHLAEFKKEILKKPAAIGAPGLAGLPGPPGPPGPAGTAGEAGPRGLMGM
KGPHGYFGLPGTPGRQGDAGVKGDTGQKGENGVGSPGKPGPQGVAGSPGIGKDGKDGAPG
KDGVNGRPGASGPRGATGAPGYCDPSNCIGRPPPLYMMNGGKKSSSFRKGP
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atggagcaccactgtgctctcttgacaaggaagcgaccacagcacccagcgatgttgctg
tacccctctacctgcatggccctcctctctctgctactctctcctgccctcggccagtta
gatctcaacaggttagatggggacacagctgtctgccctcccatgagaaatggacaagat
gaccttcctgggtttgatctgatcacccagttccagctggatgttattcctctgaagggg
gtgaggaaggtggagggctccactcctctccaggtggcatatcgcctcgataaggaggcc
aacttccagatccctaccaggctcaatttcccccgggggttccctggcgagtactctgtc
atggtcacgttccgtatgatcaagaacacgataaacaaggtgtggaacgtgtggcaggtg
gtggatgaagacggccggaagcaggcagggctcaggctgaatggagaccagcaggccttg
gaatacttcctgatgggccaggatggcaacctgcagaccgtcaccttcccagggctctct
gtgttgttcaacaccaagtggcacaaggtgatgattggggtggagagagaccaggtcacc
ctgtatgtggactgtcagcccgtggacaagaagcccatcaaggggaaaggccccgtcaac
acagagggagatacgcttattgggaggctggatactgacgctgatgcttctgttgtgttt
gaacttcagtggatgttgatccattgtgacccgaagagagccaatagagagaactgccag
gagttgcctatcacagagatgtatgccaatgctgagcctgaccccaagcctatccctggc
cctcccggtcccaccggccctgaggggccccgggggccacatggagaggacggcagagac
ggtagagatggccttccaggttcacctggcagtgctggcacttctggggccaaaggggac
aagggggagatcggtcttcctggacatagaggcatgcctggcctaccaggagctgctgga
atgcctggttccatgggcccaagaggacctgtgggtgagagaggacttcaaggttttcct
gggccagcaggctctcctggacctgagacagctggacctcccggcccacctgggaaagca
ggaactccaggagacgaggggaacattgggcctgagggtgcccctgggcctagagggggt
ctgggtctccctggtccccctggtcaaccaggaccacctggacctgtgggaccacctggg
gctggcaaagctgaggggagtggagaagattgccctgctgcctgtccagctggaccacag
ggaagcccagggctaccagggataaaggggcacaagggattaccaggtactgatggagct
gcaggggaagctggacaaaagggtgagccaggaccatctggggtgcagggcctaccaggc
aagatgggagatgatggacaaagaggtcctattggttttcctggtactcttggagagaaa
ggagacaggggtccccctggtttcaacggcatcccaggacccactggaccaccgggatct
cctggtgtggagggcagtcgtggacgtcagggtctggagggagaaaaaggtgatgatgga
gcgatcggtcctcaaggagatcagggtcctgttggtgcaaagggagacactggtactcct
gggaaagatggcatggatggactccctggagtggatggagctaaaggggaggctggcatt
cccgggactgtgggaatcaggggtatggtcggaattccagggttaccaggaaagcagggg
ctagttggagctggaggtgccaagggtgatacaggagatgacggaccagtaggaccaatc
ggagttcctgggaagacaggggcaactggaccagcaggagaagatggacaaccaggagac
aagggagcttctggtgagacaggaaagcagggaccagtgggggtcacaggtgatacaggc
atccagggtgacaaaggggacaaaggtgacactggtgaaaaaggactgaaaggtcacact
ggatataacggagaccagggtcctattggtcccgttggcccaaagggaagtaaaggtgat
ccaggtcttacaggagatgctggagtcaagggagaccagggtcctcctggtgttcctgga
atcaaaggagaggttggagagaagggcatgaagggatataccggggaagatggtagacca
gggcagccaggtcatgaaggtttgaccggtccccagggagccaatggactagagggagag
agagggttaactggatcacctgggcctaggggcctacctggtcctaaagtgaatgatatc
aaacttcgcgaactatgctcagcaattgttgaagaacacttggcagagtttaagaaggag
atcctgaagaaacccgcagcgatcggggcccctggattggcaggactgccgggccctcca
ggtcccccgggcccagcagggactgcaggagaggccggccccagaggactgatgggaatg
aagggaccacatggatactttgggttgccaggtacacctggaagacaaggtgacgctggt
gtaaagggggatacaggacagaagggagaaaatggagttggaagtccaggcaaaccaggc
ccacaaggtgtggctggcagccctggcatcgggaaggatggtaaagatggagctcccggt
aaagacggtgttaatggtaggccaggtgcctctggtcccaggggagctacaggagcccca
gggtattgtgacccctcaaactgtataggcaggcccccacctctctacatgatgaatggg
gggaagaaatcctccagcttcaggaaggggccgtga
DBGET
integrated database retrieval system