Salmo salar (Atlantic salmon): 106570454
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Entry
106570454 CDS
T04363
Symbol
vps50
Name
(RefSeq) VPS50, EARP/GARPII complex subunit
KO
K23288
syndetin
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sasa04131
]
106570454 (vps50)
Membrane trafficking [BR:
sasa04131
]
Protein recycling
Others
EARP complex
106570454 (vps50)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
106570454
NCBI-ProteinID:
XP_013998288
UniProt:
A0A1S3M4W2
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Position
ssa14:77204600..77446184
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AA seq
1002 aa
AA seq
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MQKIKSLMARQGLKSPQESIADLSPVEDIRIPSKEEMREMREQPIDPQAEQEIINSIQEV
YYSNDSFDMVQHELEKLPPELNLQELEEYRDKLKRQQAAVSKKVADLILEKQPSYVKELE
RVTSLQTNLQLAAVICTNARRQLSISKEDFTEASLGLLANQRRRHLLTGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKTCKHFDVSHYTRVQLAYTLLEKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNA
DTKFQKMQYKDLCTHITQDSYVPCLSDLCKALWEVMLSYHRTMQWHEEQDKEEAPPTTDE
AGAADTEEAVVDHSYVKKKLEHGLTRIWQEVQLKVKAYLLGTDMSNFKYDDFIVVLDVIS
RLMQVGEEFCGSKSELLQESIKRQSVNYFKNYHRTRLEELRMFLENETWELCPVKSNFNI
AQLHEFKFMGQSRSPSVSPSRQVLSSQDPVLSSQDQEVLSLFQHFSQEGNPFERHIDNKD
EETEDVLASNGYESDELEKCVYQDYDSDSDVPDELKQDYVDEQTGDVPLKSASRETLRSR
KKSDYSLNKGSNAPILTNTTLNVIRLVGKYIQMMNILKPIAFDVIHCVSQLFDYYLYAVY
TFFGRNDMPAPSLCVPGGQGGREAGPARPVAPFCWYESSGPGLISSRLRTTLNRIQESLI
QMESLGEGSASVHGGPGEDRKEKVPSPHLSQLVVLTASETLYGLAQRVVATESLVFLAEQ
FEFLQSHLDTMMPAAKKPFLQQFYSQTVSTASELRKPIYWVVAAKALDYEQMLLLMAGVK
WDIREIMSQHNVYVDVLLKEFEEFNKRLGDVSRHVRVPLPVSNVLWEHCIRLANRTLVEG
YGNVKKCSNEGRALMQLDFQQFLMKLEKLTDMRPIPDKDFVETYIKAYYLTENDMEQFIK
NHREYSMKQLANLVNVCLGSHINKKARQKLLAAIDDIDRPKR
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaagataaagtcacttatggcccggcagggcctgaaaagcccacaggagagcatt
gcagacctcagcccagtggaggacatcaggatcccaagcaaggaggagatgagggagatg
agggagcagcccatcgacccccaagcggagcaggagatcattaacagcatccaggaggtc
tactactccaacgactcctttgacatggtgcagcacgagctggagaaactcccacctgag
ctgaacttgcaggagctggaggagtacagagacaagctgaagagacaacaagcagcggtt
tccaaaaaagttgccgatcttatcctggaaaaacagccgtcctatgtcaaggagttggag
agggtgacgtcattacaaaccaatctacagctggctgcagtgatctgcaccaatgctagg
aggcagctgagtatttcaaaggaggacttcaccgaggccagcctggggctcctagccaat
cagaggaggagacacctgctcacagggctgctgaagtcactgaggaccatcaagaccctg
caaaggactgatgttcgcctcagtgagatgctggaggaggaggactatcctggtgctatc
cagttgtgtctggaatgtcagaaggctgccagcacattcaaacactacagctgcataagt
gagttgaattccaagctacaagacactctggagcaaatagaggagcagctggatgtggcc
ttgtctaaaacctgcaagcactttgacgtctcccactacaccagagttcagctggcgtac
accctcctggaaaagacccagacggccatggaccagctccacatgcacttcacccaggcc
atccacaacactgtgttccaggtggttctgggatacgtggagctctgcgcaggcaatgcc
gacaccaagtttcagaagatgcagtacaaggacctctgcacgcacatcactcaagacagc
tacgtcccctgcctgagcgacctgtgcaaggcattgtgggaggtgatgctcagctaccac
cggaccatgcagtggcatgaggagcaagacaaggaggaggccccacccaccacagatgaa
gcaggtgctgcagacacagaggaggcggttgtggaccacagctatgtaaagaagaagctg
gagcatggactcactcgaatttggcaggaagttcagctgaaagtgaaagcctatctactt
ggtacagacatgtctaacttcaaatatgatgacttcatcgtggtcttggatgttatcagc
aggctgatgcaagtgggggaggagttctgcggcagtaagtcagagttgctgcaggaatcc
atcaaacgtcagagcgtaaactacttcaagaactaccacaggacacgcctggaggagttg
cggatgtttctggagaatgagacatgggaactgtgtcctgtcaagtccaacttcaacatc
gctcagctccatgagtttaagttcatgggtcagagccggtccccctcagtgtctcccagt
agacaggtgttgtccagtcaggacccggtgttgtccagccaggaccaggaagtcctgtct
ctgtttcagcacttcagtcaggaggggaacccctttgagaggcacatcgacaacaaggat
gaggagactgaggacgtactggcctccaacgggtatgagtccgatgagctggagaagtgt
gtgtaccaggactatgacagcgacagtgatgtccctgatgaactcaagcaggactacgtg
gacgagcagaccggagacgtccctctcaagagtgcgtcaagggagactctgcgcagcagg
aagaagtccgactacagcctaaacaaaggctccaacgctcccatcctgaccaacacaacc
ctcaacgtgatccgactggtcgggaagtacatacagatgatgaacattctgaaaccaata
gcctttgatgtcatccactgtgtttcccagctgtttgattactacctgtatgctgtctac
accttcttcggccgcaatgatatgcctgcccctagcctgtgtgtgcccggcggccagggg
ggcagggaggctggtccggccaggcctgttgcccctttctgctggtatgaatcatcaggt
ccgggtctgatcagcagccgactgagaacaacactgaacagaatccaggagagcctcatc
caaatggagtctctgggggaaggcagcgccagcgtgcacggtggtccgggggaggacagg
aaggagaaggtgcccagcccccacctcagccagcttgtggtcctgacagccagcgagacc
ctctacggcctggcccagagggtggtcgccacagagtcactggtgtttctggccgagcag
tttgagttcttgcagtctcacctagacaccatgatgcctgcagctaagaagccgttcctc
cagcagttctactcacagactgtctccacggccagtgagctacgtaaacccatatactgg
gtggtggcggccaaggctttagactacgaacagatgctgctgctgatggctggagttaag
tgggacattagggagataatgtcgcagcacaacgtgtacgtggacgtcctgttaaaggag
tttgaagagtttaacaagaggctgggtgatgtgtccaggcacgtccgggtccctctgcct
gtgtctaatgtcctgtgggaacactgcatccgtctggccaacaggactctggtggaaggc
tatggtaacgtgaagaagtgcagtaacgaaggacgggccctgatgcagctggacttccag
cagttcctgatgaagctggagaagctgacggacatgaggcccatccctgacaaggacttt
gtggagacctacatcaaggcctactacctgactgagaatgacatggagcagttcatcaag
aaccacagggagtactccatgaagcagctggccaacctggtaaacgtgtgtctgggctct
cacatcaacaagaaggcccggcagaaactcctggcggctatcgacgacatcgacagacca
aagagatag
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