Salmo salar (Atlantic salmon): 106571062
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Entry
106571062 CDS
T04363
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04140
Autophagy - animal
sasa04148
Efferocytosis
sasa05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
106571062
04148 Efferocytosis
106571062
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
106571062
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sasa04131
]
106571062
Membrane trafficking [BR:
sasa04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
106571062
Hops complex
106571062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
Vps39_2
zf-RING_16
zf-RING_11
zf-C3HC4_2
DUF5600
DUF1664
zf-ANAPC11
zf-rbx1
zf-RING_UBOX
DUF2175
DUF4446
zf-C3H2C3
zf-RING_5
Apolipoprotein
Motif
Other DBs
NCBI-GeneID:
106571062
NCBI-ProteinID:
XP_013999196
UniProt:
A0A1S3M8B5
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All DBs
Position
ssa15:complement(16964036..16987454)
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AA seq
986 aa
AA seq
DB search
MSSILDEYEDSLNSRHPVQHSSRLSAANIGITHSGFVNVRLEEEKPMFNKQRIDFSPPEK
INHFAVCNNQLCMSLGKDTLLRIDLAKPDRPNQVELGRKEDIRVHKLFLDPTGSHLVISL
STSECLYLNRNTQKVRSLSRWRGHLIESVGWNKLVRTETNTGPILVGTSQGIIFEAEISA
SEGSLFNTNPDQYFKQVHSLEEDGRPAPVCCIEVERGPESKVFIIATTRKRLFQFVGRVA
EGSEQQGFSSIFSQNQELLPSFQEFPFNMGYSEITFYTPKLRSCPKAFAWMMGNGVLYGQ
LDYVKLDSLLSDVQVWDYTPDIDFSFNKPISIVLTQFHFLLLLPDRVKAICTLNGQVVYE
DVFPDKFGTLKKMIKDPAGGLVWIYTEKAVFRYHIQREARDVWQMYMSMNKFDLAKEYCR
DRPECMDTVLAKEAEHCFQDKRYLESAKCYALTQNYFEEIALKFIEAKQEEALKEFLLKK
LNNLKQSEKTQITLLVTWLTELYLNRLGLLQSDEGKHGMFQETRDEFRKFLTSSKHKECL
YNNRTTIYDLLASHGNVDDMVYFSVIMQDYERVISHHCQHDDYSAALEVLSKHCDEKLFY
KFSPILMQHIPKKVVDAWIQMGSRLEPKKLIPALVNYSQMGSTQQINETIRYMEFCVYQL
AVTEEAIHNYLLSLYAMYKPDSLLWYLEQAGTHLSDIRYDLKYALRLCAEHGYLQACVLV
YKIMELYEEAVDLALQVDVDLAKTCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMNC
LSSCNLLKIEDILPFFPDFVTIDHFKEAICSSLEEYNQHIDELKQEMEEATESAKRIRED
IQEMRNKYGVVESQEKCAACDFPLLNRPFYLFLCGHMFHYDCLFQEVSPHLSTYKQTKLD
EMQKKLAAATQTSKSRHRPAPKEEEGGDTDTSLGKGSAGVSREQIKSDIDDIIACECVYC
GELMIKSIDKPFIEPQKYEEEKSSWL
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctatcctggatgaatacgaggactcgctgaacagcaggcaccctgtgcaacac
agtagccgcctgtctgctgccaacatcggcataacacactccggtttcgtgaatgtgaga
ctggaggaggagaagccgatgttcaacaaacagaggattgatttctcacccccagagaag
atcaaccactttgctgtctgcaacaatcagctatgcatgagtttagggaaggacactctt
ctgaggattgaccttgccaagccggaccggcccaaccaggtagaactggggagaaaggaa
gacattagagtacacaagctcttcctggaccccacagggtcccacctggtgatttctctc
agtaccagtgagtgtctgtatctgaacaggaacacccagaaggtgaggtctctgtcccgc
tggagaggacacctcatagagagtgtcggctggaacaagctagtgaggacagagaccaac
actgggcccatcctagtgggaaccagccagggaatcatcttcgaggctgagatctctgct
tcagagggaagcctgtttaacaccaaccccgaccagtacttcaaacaggtccattccctg
gaggaggacgggaggcctgctccagtatgctgtatagaggtggagagaggtccggagtct
aaagttttcatcatcgccaccaccaggaagcgtttgttccagttcgtaggtcgtgtggcg
gagggatcagagcagcaaggcttcagctccatcttctcacagaatcaggagcttctgccc
agcttccaggagtttccgtttaatatgggctacagtgagatcaccttctacacccccaag
ctcaggtcgtgccccaaggccttcgcatggatgatgggtaacggagttctctacggtcaa
ctggactacgtcaagctggactcactgctcagtgatgtgcaggtgtgggactacacccca
gacatagacttcagtttcaacaagcccatctccatcgtgttgactcagtttcactttcta
ctcctcctcccagaccgcgtcaaagcgatctgcaccctcaacggacaggtggtgtacgaa
gatgtgttccctgataagttcggcactctgaagaagatgatcaaggacccagcaggaggc
ctggtgtggatctacactgagaaggccgtctttagataccacatccagagagaagccagg
gatgtgtggcagatgtacatgagcatgaacaagtttgacctggctaaggagtactgccgg
gaccggccagagtgcatggacacggtcctggctaaggaggcagaacactgcttccaggac
aaacgctacctggagagtgctaagtgctacgctctgacccagaattactttgaggagatt
gcgttgaagttcatcgaggcgaaacaggaagaagctctgaaagagttccttctgaagaaa
ctcaacaacctgaagcagagtgagaagacccagatcaccttactggtcacctggctgact
gagctctacctgaaccgcctggggcttctacaatcagatgaggggaaacatgggatgttc
caggagacacgtgatgagttccggaagtttctcactagttccaaacacaaggagtgtctc
tataacaaccgtacgaccatctatgacctgttggctagccacggcaacgtggacgacatg
gtctacttctctgtcatcatgcaggactatgagagggtgatctcccaccactgtcagcat
gatgactatagcgccgccctggaggtgctctctaagcactgcgacgagaagctcttctat
aagttctcccccatcctcatgcaacacatacctaagaaggtggtggatgcctggatccag
atgggtagcagactggagcctaagaagctgatcccagccctggtcaactacagtcagatg
ggttcaacacaacagatcaacgagaccatccgttacatggagttctgtgtctaccagctc
gctgtgacagaagaggccatacacaactacctgctgtccctctacgccatgtacaaacct
gatagtctcttgtggtatttggaacaggctgggacccacttgtcagacatccgctatgat
ttaaagtatgctctgaggctgtgtgctgaacatggttacctccaggcctgtgttctggtc
tataagatcatggagctgtatgaggaagctgtcgatctggccctacaagtggatgtggac
ttggccaagacgtgtgctgacctgcctgaggatgatgaggagttgaggaagaagttgtgg
ctgaagatcgcccgtcacgtggtgcaagaggagaaggatgtgaagaaggccatgaactgt
ctgtccagctgtaacctgctcaagatagaagacatactgcccttcttcccagacttcgtc
accatagaccactttaaggaggctatctgcagctctttagaggaatacaaccagcatata
gacgagctgaagcaggagatggaagaggcgacggagagcgccaagcggatcagagaggac
atccaggagatgaggaacaagtacggggtggtggagagccaggagaaatgtgctgcctgt
gacttccccctcctcaacagacccttctatctattcctctgtggacacatgttccattac
gactgccttttccaagaggtgagccctcacctgtccacctacaagcagactaaactagat
gagatgcagaagaagctggctgccgccactcagacctccaagtcccgccaccgccccgcc
cccaaggaggaggaggggggcgacactgacaccagcctggggaaaggaagcgccggggtc
agccgagagcagatcaagtccgacatcgatgacatcatcgcctgcgagtgtgtgtactgc
ggcgagctgatgatcaagtcgatcgacaagccgtttattgagccacagaagtacgaggag
gaaaagtccagctggctctga
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integrated database retrieval system
