Salmo salar (Atlantic salmon): 106571315
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Entry
106571315 CDS
T04363
Name
(RefSeq) DNA polymerase zeta catalytic subunit-like
KO
K02350
DNA polymerase zeta [EC:
2.7.7.7
]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
106571315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sasa03400
]
106571315
Enzymes [BR:
sasa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
106571315
DNA repair and recombination proteins [BR:
sasa03400
]
Eukaryotic type
TLS (translesion DNA synthesis) factors
B-family DNA polymerases
106571315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4683
DNA_pol_B
POL3_N
REV3_N
DNA_pol_B_exo1
zf-C4pol
Motif
Other DBs
NCBI-GeneID:
106571315
NCBI-ProteinID:
XP_013999715
UniProt:
A0A1S3M9F5
LinkDB
All DBs
Position
ssa15:30004383..30098815
Genome browser
AA seq
3016 aa
AA seq
DB search
MFAVRIVTADYYLTSPLKDLDVIYNEFRESDVKKVPVVRIFGATPIGQKTCLHLHGIFPY
LYVPYDGYGQEAELYLRQVAFSIDRALNVSMGNPSSNTQHVFKVALVSGMPFYGYHAKEK
TFMKIYLYNPQMVKRVCELLQGGAVMNKSYQPHEAHIPYLLQLFIDYNLYGMNMVNLGAV
KFRRSQQCKEGSPPDRQGFRSRPSTRPLKSPCTSKLGDSTLGGAFVRWQEDATPCSLVLE
DVEKQSTCELEADAVAADILNRLEIDNQIGRNPGLQVIWEDEKQRRREKNQSSQIETPQS
QDRRFVASTESERIFMKRLKEILKENEFDVTQSGSVEGAAEEQDPFPAELSVYPDVLTPE
LLHCTPANQVEVHRDSQTDTKRNCGKDQGEAIVDEEAILSLLESSQTFLPLSQRSNHSPL
LDSSRDHAMVDLLAGLEDDGYREAPMRQNSQHSLPGGGSTHYNSDEEEEGPELEREEAEL
SLMMSQRWDSDLPEQSPRQRPGVKDAEESFSDEPQESSDEEMERRGDNSLSANLSIPQLD
GAADENSDSSLTDKGSRTHSSLTVTDKILGKRNPFPGETVRLEPLSSTKVLLEFKHPEHR
QAHSQDAEEPANKHFLGQDSHECSTGFKVNKERPYIQPVKHPIPCNIANQAEVSQICVDK
MDVVRPLYTYEKKTMALDESDLDVFPFSNGKITQSRKKYSSMKNVEKNRLSILQNHRSFS
LCYSELRNCPSTTDLELGQKGCKSPILRNSITPTPCPIEEDELLAPLEGEMGQDSEDGDM
GELKIRYEDYQENKTERIIVAQKEAHYKFFPSVILSNCLTRPAKKVVGNKLTDGCAKLEQ
AETRRSRLKLGKRSLAAAAQKANAYAGESPASDTQVSTAFMSITPTCPKSTDTEEKPVTV
AKSVVVETGPTEPLPESPALAPTPLPAPIASPAPAPVPAILNEVSVEGRLAPLLELPVKV
TCTKASGLPGSKYTLRAKRKMSYDSSEDGEQSVSSRMKHPLALRDRFKENYVLSTQELKY
QKRRKMYRKEPREPPIIIKYIIINRFKGQKNMLVKMAKVSAEEQRVVLTPDRVETYTKMA
PIKTFWPKVPESCAVKFPLSEPKANKKQPKRKAKVNTTTKKTVSSPPRVRVRQGGEKPRR
TRGLRKTLTLPSLPCPWPCYCELADDHITEYTDVMVELGYLSERSLSPVDSTPPRCWSPS
DPLMEAISSDRLMNRLNDPCLTSVCHKPPPESLGRGVRNRSRTAKPRNVTSTSPRRRIKL
SEEVKKESTARRKSTIGTPRRRKKDLETVDGTSVGGVCTTAIATRTRRPRRKKQAEEPEL
PPVRSRDCDSSQHLFPEGELPPTESSSEDIPPFQKPASKTSQIIDGSSSKSLTQFSQSIE
PTSEDCESSIMKVNQSFALELAQTQPDQPKGCAVKADTTADECTFHQVKSPTQVGDRKGA
PKAGSPHSGLQNGKTLPEDISGLAVLKKLQQRGGQCLSTTTQPPGSTPEPAAAKPSRARR
APSATPRKPRAPRTTTAKEGKPRNRKEKANSQPEVPVKQKLPMSDDSPVFLSDPGLDSCY
SIEDSLSPELPHNYNFDINAIGIGSQAEFSSLYMGSQFVLTDKNLPQKFLSDITQDAVPA
LALSLEKRPEVLFGSGEELHESLSGPLTPELFDKPKNGELVFNHRSPLDSERLPRSREWG
TSLGKLHGLSHFQGFHCERKELLFSAFDPILPLPLSSVSFADNEGLPTGDLLEGNYAFTS
TTPSSSRRSFSSLSQVKAISQLLRGTGGGAHILKPLMSPPSREEILTTLLDLEMSEATFQ
EPFCSNPSDAPGKPREVGGRKLMVETMLTKELAEFNGDLCLEGLQFWKTAFSTMTRAGSS
HTLGAEDTRDQAQLSPSSAGDQKVILLPCRSAPRRERVQLWLEARKQYEHLQRGRRDMGE
LERGRLEQVTDEQQTDRTEQPTAFHCSALEDEEEFEKPSGIRTRRERRDNLSLQISPVGG
VETQDSPRGVKPVPDINIRDSEEEYYGKSISPDSPDLLPWQEPTQPSPSGPDAVEGERRG
SDRGLPLSPRLCTSPERREEKHFLSPSPFSSKKTRGDGECTSPQLHSTPVLRRHKGRCES
ETVCSTPVTQDAESTSQRLQHRRGEHTETLRRVLLTTQMKNQFAALNAPKKDNSQIEGPS
ISNSYGFKVNMQDLQDAKAMHEVQHLTLMSMELHARTRRDLEPDPEFDPICALFYCFSSD
TPLPDSDKTQLTGAIVVDKDCQESGQGVRGTAPLLVRSGVSGLQVTYAVNEKQLFQEVVT
IMRRFDPDILVGYEVQMRSWGYLLQRASALSVDLCRQLSRVPGDAKENHFAAERDEYGAD
TMTEIHIIGRIVINLWRIMKTEVTLNNYSFENVAFHILHQRFPLYSPRSLSDWFDHNTDL
YRWKVVDHYVSRVAGTVQLLQQHDIIGRTSELARVFGIQFYHVLTRGSQYRVESMMLRVA
KPMNYIPVTPSIQQRAQQRAPQCIPLVMEPESRFYSNSVVVLDFQSLYPSIVIAYNYCYS
TCLGHVDSMGTADEFKFGCTSLRVPPELLYQLRNDITVSPNGIAFVKPTVRKGVLPSMLE
EILNTRFMVKRFMKTYKQDKALMRLLDARQLGLKLITNVTFGYTAANCSGRMPSVEVGDS
IVHKARETLERAIKLVNDTKKWGAHVVYSDTDSMFVLLKGATKEQAFKIGNEIAEAVTAT
NPKPVKLKFEKVYLPCVLQTKKRYVGYMYERLDQKDPVFHAKGIKTARRDGCPAVSKILE
RSIKLLFETRDISQVKQFVQHQCGKVLEAKASMQDLTFAKEYRGRSSYRPGTCVPALELT
RRMMAYDRRLEPRAGERVPYVIVYGTPGLPLIQLVRRPLEVLQDPSLRLNATYYITKQIL
PPLQRIFQLIGVDVLSWYQEIPRVQKASCSTVAERKGTISQYFTTLHCPVCDELTQLGVC
ISCRGEPQRVAITLYQDMRLWESQQDQLLQICRNCSGSAERQVPCVSLDCPVLYKLSRVN
RQLSKVPYLRQLLEQF
NT seq
9051 nt
NT seq
+upstream
nt +downstream
nt
atgtttgccgtccgtatcgtcaccgctgactactaccttacaagtcctctcaaagacttg
gacgtcatttataacgaattcagagaaagtgacgtgaagaaagtaccagtggttcggatt
ttcggggcaactccaataggtcagaagacatgtctccacctccatggcatcttcccctac
ctctatgtgccctacgatggctacgggcaggaggcggagctctacctgcgtcaggtggcc
ttcagcatcgacagggccctcaacgtgtccatgggaaacccctcctctaacacgcagcac
gtcttcaaggtggcgctggtctccggcatgcctttttatggataccatgccaaagagaag
acgtttatgaagatctatctgtacaatcctcagatggtcaaaagggtgtgtgagctgtta
caaggaggtgctgtgatgaacaagagctaccagccccacgaggcccacattccctacctg
ctgcagctattcatcgactacaacctgtacggcatgaacatggtcaacctgggagctgtc
aagttccgccggagccagcagtgcaaagaggggtctcccccagatcgccagggcttccgc
agcagacccagcaccagacccttgaagagcccctgtacctccaaactgggtgacagtacc
ctgggaggcgcgtttgtccgctggcaggaggatgccacaccctgttctctagtcctggag
gatgtggagaaacagagtacgtgtgagctggaggcagatgctgtggctgcagacatcctc
aaccgtctggagatagacaatcagattggcaggaaccctggcctgcaggtcatctgggag
gacgagaagcagagacgacgagagaagaaccagtcatctcagatcgagaccccacagtca
caggatcgcaggtttgtcgcctcgacggagagcgagagaatcttcatgaagagattgaag
gagatcctgaaggaaaatgagtttgatgtgactcagtctgggtctgtggagggcgcggca
gaggagcaggatcccttcccagctgaactgtctgtataccccgatgtcctgaccccagag
ctgctgcattgtacaccagctaaccaggtggaggttcacagagactctcagactgacact
aaaaggaactgtggtaaagaccagggggaggccattgtggatgaggaggccattctgagt
ctgttggaaagcagccagaccttcctccccctctcccagagatccaaccactccccctta
ctagatagcagccgggaccatgccatggttgacctgctggcaggcctggaggatgatggg
tacagagaagcccctatgaggcagaactcccagcattctctgcccgggggagggagcact
cactacaacagtgacgaggaggaggaggggccagagctagagagggaggaggcagaactc
agtctgatgatgtcacagagatgggacagcgaccttccagaacagtctcctagacagaga
cctggtgtgaaggatgcagaggagagcttcagtgacgagccccaggaatcctccgatgag
gagatggaaaggaggggggacaactctctctctgccaacctgtccattcctcagctggac
ggcgctgcggacgagaacagtgattcatcgttaacggacaaaggctccaggacccactcg
tccctcaccgtcacagacaagatcctggggaagaggaacccctttcctggggagactgtc
cgcctggagcccctgtcctccaccaaggtcctcctggagttcaaacaccctgaacatagg
caggcccactcacaggacgcagaggaaccagccaataagcacttcctcggccaggacagt
cacgagtgctccacggggttcaaggtgaataaagagagaccttacatccagccggtcaaa
caccccatcccctgcaatatcgccaaccaggctgaggtttctcagatctgtgtggacaaa
atggacgttgttcggcctctgtacacctacgagaagaagacgatggctctggatgagtca
gacctggacgtctttccgttcagcaacgggaagatcacccagagcaggaagaagtacagc
agtatgaagaacgtcgagaagaatcgtctgtccatcctgcagaaccacaggagcttttcc
ctgtgttactctgagctgaggaactgccccagcacgacagatctggagctgggtcagaaa
ggctgtaaaagcccaatactgagaaacagtataaccccaactccctgccccatagaagag
gacgagctcctggccccgctggagggcgagatgggccaggacagcgaggacggcgacatg
ggtgagctgaagatcaggtacgaggactatcaggagaacaagactgagaggatcatagta
gcccagaaggaggcgcactataagttcttccccagtgttattctctccaactgtctaacc
aggccagctaagaaggtagtgggcaacaagctgaccgatggctgtgctaagctagagcag
gcagagacacgcaggtccaggcttaagcttggcaagaggtctttggctgctgcagcccag
aaggctaatgcatacgctggggaaagcccagcctctgacacccaagtcagcacagccttt
atgtccatcacgcctacttgtccaaagagcacggacaccgaggagaagccagtcacagtg
gcaaagtcagttgtagtggagactgggcccacagaaccactgccagaatcccctgccctg
gcccctacccctctgccagcccctatcgcttcccctgcaccggccccagtccctgccatt
ctgaatgaggtgtctgtggagggcaggttggccccactgcttgagctccctgttaaagta
acctgcaccaaagcctcaggtctgcctggcagcaagtacaccctgagggccaaacgaaag
atgagctacgacagcagcgaggacggggaacagtcggtatcctctcgcatgaaacaccct
ctggccctccgagaccgcttcaaagaaaactacgtcctcagcacgcaggaactaaagtac
cagaaacgacggaagatgtacagaaaggagccaagggagccgcccatcatcatcaaatac
ataatcatcaaccggttcaaaggtcaaaagaacatgttggtgaagatggccaaggtgagt
gctgaggagcagcgggtggtgctgacacctgacagagtggagacatacaccaaaatggcc
cccatcaagaccttctggcctaaggttccagagtcttgtgcggtcaagttccctctcagt
gagcccaaggctaataagaaacagcccaaacgaaaggccaaggtcaacaccaccactaag
aaaacggtcagcagtccacccagagtccgagttaggcaggggggtgagaagcctagaagg
actagaggccttagaaaaaccttgactctgccctctctgccatgcccgtggccatgttac
tgtgaactggccgatgaccacatcactgagtacactgatgtgatggtggagttgggttat
ctatctgagagatctcttagccctgttgattcaaccccaccccggtgttggtcccccagt
gacccccttatggaagccataagttctgatcggttgatgaaccgattaaatgatccctgt
ctcacttctgtttgtcacaaaccccccccagagtccttaggccgaggcgtgcggaaccgc
agccggactgctaaacctagaaatgtaacctctaccagcccaagaagacggattaagctt
tcagaggaagtcaaaaaggagagcacagcgagaaggaaaagtacaattgggactccaagg
aggagaaagaaagatctagaaacagttgatggaactagtgtgggtggtgtctgtactact
gccatcgccacaagaacgaggaggcctcggaggaagaagcaggcagaagagcctgaattg
ccccctgtcagaagcagagactgtgacagttcccagcacctcttcccagagggtgagctg
cctcctactgaatcctcctcagaggacataccaccctttcagaagccagccagcaaaacc
agccaaatcattgacggctccagctctaaatccctaacccagttctcgcagtctattgaa
ccaacgtctgaggactgtgaaagctccattatgaaggtgaaccaaagctttgctcttgaa
ctcgcccaaacgcagcctgaccaaccgaagggttgtgctgtgaaggcagacactactgct
gatgaatgcacgttccatcaggttaaatccccaactcaggtgggggacagaaagggcgcc
cccaaagcagggtccccccactcaggccttcagaatgggaagaccttacctgaggacatc
tctggcctggctgttctgaagaagctccagcagagaggtgggcagtgcctttccactaca
acacagccccctggctccacaccagaacctgctgcagccaagccatcaagagccaggaga
gctccctcagccaccccacggaaaccccgggccccaagaactacaactgccaaggagggg
aaacccaggaacaggaaggagaaggcgaactctcagccggaggtacctgtgaagcaaaag
ctccccatgtcagatgacagcccagtgttcctgtcagacccaggcctggacagctgctac
tccatagaggacagcctgtccccagagctcccacacaactacaactttgacatcaacgcc
atcggtatcggtagccaggcagagttctccagcctgtacatgggcagccagtttgttctg
accgacaagaacctgcctcagaagttcctgagtgacatcacccaggatgcggtacctgcc
ttggcgctgagcttagagaagaggcctgaggtgttgtttggctcaggggaggagctccat
gaaagcttgtccggacctctgactcctgaactctttgacaagccaaaaaatggcgagctt
gtgttcaatcatcgatcacctctggactctgagaggttaccaaggagcagagagtgggga
acatctctgggcaaactccacggcctcagccacttccagggctttcactgtgagaggaaa
gagctgctgttctctgcctttgaccccatcttaccactgcctttgagctctgtgtctttc
gcagacaacgaagggttaccgactggggacctactggaggggaattatgcttttacatca
accacgcccagtagttcgcggcgctccttcagctctctatcccaggtgaaggccatcagc
cagctcctcagagggacaggggggggagcccacatcctcaagcccctcatgtcccctccc
agccgggaagagatcctcaccaccctcctggacctggagatgtctgaggccaccttccag
gagccattctgcagcaacccttcagacgccccagggaaacccagggaggttggtgggcgt
aagctgatggtggagacaatgttgaccaaggagctggctgagttcaacggggacctgtgc
ctggaggggctacagttctggaagacagccttctctaccatgacccgggccggctcctct
cacacactgggagcagaggacaccagagaccaggcccagctcagcccctcttcagccggg
gaccagaaggtcatcctgctgccttgcaggagtgctcccaggcgggaacgcgtccagcta
tggctggaggccagaaaacagtacgagcatctgcagaggggcaggagagacatgggagaa
ctggagaggggaaggttggaacaggtaacagacgagcagcaaacagacaggactgaacag
cccactgcgttccattgttcagcattggaggacgaggaggagtttgagaagccctcaggt
atcaggactcggagggagaggagggacaatctgtccctacagatatcacctgttggaggg
gtggaaactcaggacagccccagaggagtgaagcctgtaccggacattaacatcagagac
tctgaggaggagtactatggtaaatccatctctccagactcaccagacctgctgccatgg
caggagcccacgcagcccagtccctcaggaccagacgcagtagagggagagaggagaggg
tcagatcgagggttacccctgtcccccaggctctgcacatccccagagaggagagaggag
aagcacttcctcagtccttctcccttctcttccaagaagacccggggggacggggagtgt
accagcccccagctccacagcaccccagtccttaggcgacacaaaggcaggtgtgagtcg
gagactgtgtgcagcacccctgtgactcaagacgcagagtccacgtctcagagactgcag
cacaggagaggggaacacacagaaaccctgaggagagtgctactgaccacacagatgaag
aaccagtttgctgctttgaacgctccaaagaaagacaactctcagatcgagggccccagc
atcagcaattcatacggattcaaagtcaacatgcaagacctccaggacgctaaagccatg
cacgaggtgcagcacctgacgttgatgagcatggagcttcacgcgcggacccgacgggac
ctggaacccgaccccgaatttgaccccatatgtgccttattctactgcttcagctctgac
acacctttacctgactcagacaagacccagctgactggggccatcgtggtagataaggac
tgccaggagagtggccaaggtgtcagaggaacagcgcccctgctggtaagatcaggtgtc
tcaggactgcaggtcacctacgctgtgaatgagaagcagctgttccaggaagttgtcact
atcatgaggaggtttgacccagacattctggtgggctacgaggtccagatgcgttcctgg
ggctacctcctccagcgggcatcagcactcagtgtggacctgtgccggcagctttcccgg
gtgccaggtgacgccaaagagaaccatttcgcagcagagagagacgagtatggagcagac
accatgacagagatacacatcatcggacgtatcgtcatcaacctgtggagaattatgaag
actgaggtgacattgaacaactacagttttgagaatgtggccttccacatcctgcaccag
cgcttccccctgtacagcccccgctccctgtcagactggttcgaccacaacactgacctg
tacaggtggaaggtggtggaccactatgttagccgggtggccggtaccgtgcagcttctc
cagcagcatgacatcatcggcaggaccagcgagctggccagggtgtttgggatccagttc
taccacgtgctcaccaggggatcccagtaccgtgtggagtccatgatgctgcgtgtggcc
aagcccatgaactacatcccggtgacgcccagcatacagcagagagcccagcagagggcg
ccgcagtgcatcccgctggtcatggagcctgagtcgcgcttctacagcaattctgtggtg
gtgctggacttccagtcgctctacccctccatcgtcatcgcctacaactactgctactct
acctgcctgggccacgtggacagcatgggaacggccgatgagtttaagtttggctgcacc
tccctgcgggttccccctgagctcctctaccaactccgcaatgacatcaccgtctctccc
aacggcatcgcctttgtcaagcccacggtgaggaagggggtcctgcccagcatgttggag
gagatcctgaacacgcggttcatggtgaagcgcttcatgaagacctacaagcaggacaag
gccttgatgaggctgctggacgccaggcagctgggactcaagctcatcaccaacgtcacc
ttcggctataccgccgccaactgctctggacgcatgcccagcgtagaggttggtgacagt
attgtccacaaggccagggagaccctggagagagccatcaagctggtcaacgacaccaag
aaatggggagcccacgttgtgtacagtgacacagacagcatgtttgtcctgctaaaggga
gcaactaaagagcaggccttcaagatcggcaacgagatcgcagaggcagtgactgctacc
aaccctaaacctgtcaagctgaagtttgagaaggtgtatctgccgtgcgtgctccagaca
aagaagcggtacgtgggctacatgtacgagaggctggaccagaaggaccccgtgttccac
gccaaggggattaaaacagcgcgccgagacggatgccctgctgtttccaagattttggag
cgttccatcaagctgctgtttgagacgcgggacatcagccaggtgaagcagtttgtgcag
catcagtgtgggaaggtgctggaggccaaggccagcatgcaggacctgaccttcgctaag
gagtacaggggcaggagctcctaccggccggggacctgcgtccctgctctggagctcacc
aggcgtatgatggcctatgaccggcgcctggagccacgggcgggcgagagggtgccctac
gtgatcgtgtacgggacgcccggcctgcccctcatccagctggtgcggcggcccttagag
gtgctgcaggacccaagtctgcgcctcaacgccacctactacatcaccaagcagatcctg
cccccgctgcagcgcatcttccagctcatcggcgtggacgtgctcagctggtaccaggag
atccccagggtccagaaggcatcgtgctccacggtggctgagaggaaggggaccatctcc
cagtacttcaccacgctgcactgtcctgtgtgtgatgagcttacccagctaggtgtgtgt
atcagctgccggggcgagccccaacgcgtggccatcactctctaccaggacatgcggctg
tgggagagccagcaggaccagctgctacagatctgtaggaactgtagcggcagtgcggag
cggcaggttccgtgtgtgtctctggactgtcctgtgctctacaagctgtcccgggtcaac
agacagctctccaaggtgccctacctccgacagctcctggagcagttctga
DBGET
integrated database retrieval system
