Salmo salar (Atlantic salmon): 106571441
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Entry
106571441 CDS
T04363
Name
(RefSeq) tripartite motif-containing protein 54-like
KO
K10653
tripartite motif-containing protein 54
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
106571441
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sasa04121
]
106571441
Ubiquitin system [BR:
sasa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
106571441
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
RING_XB3-XBAT31
zf-B_box
zf-RING_5
zf-C3HC4_4
zf-C3HC4_3
zf-RING_2
zf-RING_6
TRIM_CC
Sina_RING
Prok-RING_4
COG2_C
CDC37_M
DUF6747
CoiA_N
Motif
Other DBs
NCBI-GeneID:
106571441
NCBI-ProteinID:
XP_014000021
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All DBs
Position
ssa15:complement(35663740..35681834)
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AA seq
393 aa
AA seq
DB search
MNFALGYKPGHLRESSTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCANDVFQAAN
PLWQSRGSKSMSTGGRFRCPSCRHEAVLDRHGVYGLQRNLLVENIIDIYKQEESSRPLNP
TKVEQQQLMCEEHDEEKINIYCLSCETPTCSMCKVFGQHKDCEVAPLQNVYKRQKTELSD
GIAILVAGNDRIQALLSQMEETCRSIQENGRRQKQSLCDKFDGLYAILEERKKELVGMIS
RQQDDKLDYIRSLMRRHGDHLEGAVKLVETAIQSMEEPQMAVFLQSIKDIFKQISTTAKV
SSMECPEPGYESMVHFVINTENVADMLRTIDFNTLQVSRKRTGRMVMILVFPVKKGLLRG
FMVIPCAHPSRVLMFAFTIRLSTGFAVHSIYIE
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgcactgggctacaaacctggccatctcagggagtctagcaccatggataac
ttggagaagcagctcatctgccccatctgcctggagatgttcaccaagcctgtggtcata
ctgccctgccagcacaacctctgcaggaagtgtgccaatgacgtcttccaggctgccaac
cccctgtggcagtctcgggggtccaagtccatgtccacagggggtcgtttccgctgccca
tcatgtcgtcatgaggcagtgttggaccgccatggtgtgtatggcctacagaggaacctg
ctagtagagaacatcatagacatctacaaacaagaagagtccagcaggcccctgaacccc
accaaggtggagcagcaacagctgatgtgtgaggagcatgacgaagagaagatcaacatc
tactgcctgagctgtgagacgcccacctgctccatgtgtaaagtgtttggccagcacaag
gactgtgaggtggcccccctgcagaacgtctacaagagacagaagacggagctgagtgac
ggcatcgccatcttggtggctgggaacgaccgtatccaggccctcctctctcagatggag
gagacctgcaggtccatccaggagaacggccgtcgtcagaaacagagtctgtgtgataag
tttgacgggctgtatgccatcctggaggagaggaagaaggagttggtggggatgatcagc
cgccagcaggatgacaagctggactacatccgttccctcatgcgtcgccatggagaccac
ctggagggcgccgtcaagctggtggagacagccatccagtccatggaggaaccacagatg
gctgtgttcctacagagcatcaaggatatatttaaacagatcagcaccactgccaaggtg
tccagtatggaatgtccagagccgggctacgagagcatggtccattttgtcatcaacaca
gagaatgtggcagacatgctgaggaccattgacttcaacacattgcaggtttccagaaaa
aggacggggaggatggttatgatcttggtttttccagtcaagaaaggactacttagaggg
tttatggtaatcccctgcgcacatccatccagagtattgatgtttgcctttaccattcgg
ctgtcaactggttttgctgtccacagtatttacattgagtga
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