Salmo salar (Atlantic salmon): 106571637
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Entry
106571637 CDS
T04363
Symbol
chd1
Name
(RefSeq) chromodomain helicase DNA binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sasa03021
]
106571637 (chd1)
03036 Chromosome and associated proteins [BR:
sasa03036
]
106571637 (chd1)
Transcription machinery [BR:
sasa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
106571637 (chd1)
Chromosome and associated proteins [BR:
sasa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
106571637 (chd1)
SLIK complex
106571637 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
HDA2-3
DEAD
CHDCT2
Motif
Other DBs
NCBI-GeneID:
106571637
NCBI-ProteinID:
XP_014000422
UniProt:
A0A1S3MB71
LinkDB
All DBs
Position
ssa01:complement(150346064..150385610)
Genome browser
AA seq
1800 aa
AA seq
DB search
MAGRSEDEGVSNSSGESSNSDDESGSGSGSGSSSSSSSSSSSGSGSGSGSDSGSQSDSDS
GKSKEKNEPENKAKIDGAEFWKSNPSILAVQRSAMLRKQQLQQQQQQQSSSNSGSDSSSS
DDSDDDSSGKRRKSGSGSSSGSGSGSGSGSGSDSSAQEQEHSEESDDYEPSHKVKSRKLP
TKANARNGKKSNVQRKKPSAGSSSDDDYDGKKSSSNQGPRRQATQNVSYKEDEEQKTDSD
DLVEVCGEDVPPPDEDEFETLERVMETRIGRRGATGGTTTVYAVEADGDPNANFNPNKEA
GEQQYLFKWKGWSHIHNTWETEETLKLQNVKGMKKLDNFKKKESDKKKWIKCSSPEDVEY
FNCQQELMDDLHSQYQLVERIIGHSNQKSAAGFPDYLCKWQGLSYSECSWEDGALISRKY
QKSIDDYMRRNQSKTIPSRDCKVLKQRPRFIPMKKQPSYIGGEGLQLRDYQLDSLNWMAH
SWCKGNSCILADEMGLGKTIQTISFLNYQFHEHQLYGPFLLVVPLSTLVSWQREIQLWAP
LMNVVVYLGDISSRGMIRTHEWMHVQNKRLKFNILLTTYEILLKDKGFLGNVPWAFIGVD
EAHRLKNDDSLLYKTMMDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFHSWEIFEEE
HGKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAIQKQYYKWILTRNY
KALSKGTKGSTSGFLNIMMELKKCCNHCYLIKPPEDSEFYNKQEALQHLIRSSGKLVLLD
KLLLRLRERGHRVLIFSQMVRMLDILAEYLKSRQFLFQRLDGSIKGEMRKQALDHFNAEG
SEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKRQVNIYRLVT
KSSVEEEIIERAKKKMVLDHLVIQRMDTTGKTVLHTGTAPSSATPFNKEELSAILKFGAE
ELFKEQEGEEQEPQDMDIDDILKRAETRENDPGPSTVGEELLSQFKVANFSMMEEEEIVM
DSERHHRGWDDIIPEEQRRRMEEEERQKELEEIYLLPRMRNCAKQVNFNGSESRRSRNRR
YSGSDSDSVSDRKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARD
AELVDKSEHDLKRLAETVHNGCLKTLRENPCGPEKTSGGRRGKVKGPTFRISGVQVNAKL
VISHEEELAPLHKAIPADPDERKRYTIPCHSKAAHFDIDWGKEDDSSLLIGIYEYGYGSW
EMIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAKKEAQRQAGTANWRK
RKPRSKKTKAVKPAKVDELVKSPSSTPHSDKSSEDEIEEEKEVVPVKLPPRRGRAERVVV
KEEPEPEEEPSPPEEKEPKEREMKKEVKKEKKEESREVKEKDLKEKKETKPVDPVHEQEE
VTGEKPSEVKTEVREKVKKTSDTPVHITAGGENISEESEELDQKTFSVCKERMRPVKAAL
KQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYSNPEQIKQWRKNLWIFVSKFTEF
DARKLHKLYKHAIKKRQENAQAADGITSTVNTHGFKHADIERLKDNSHHDDSSRDSYSSE
RHHSSSRYHEDRDSRDRHTSDPYSRMAGSGGDSRKRPYSSFSNGKDHRDHYRSDRQDSRY
YSDSKHRKVDEHRSGRDGRMDSKERSHSDHRSHSEHHSGSDYSSGHHKSSSRGDSYRYHA
DWQMDQRASASGPRSPRDQRSPRDQRSPYDGRSPLGHRSPFEYSSDHKSTPEQIWSSRKT
NT seq
5403 nt
NT seq
+upstream
nt +downstream
nt
atggctggacgaagtgaagacgagggtgtgagcaacagcagtggagagtcaagcaactcg
gacgatgagtccgggtcgggctctggatcgggctccagctccagctccagctccagttcc
agctcaggaagtggctcaggaagcggctcagactccggcagccagtccgattccgactct
gggaaatccaaggagaagaacgaaccagaaaacaaagccaagatcgacggagccgagttc
tggaagtccaaccccagtatcctagcagttcaaaggtcagctatgctcaggaaacagcaa
ctccagcagcaacaacaacaacagagctcttcaaacagtggatcggattcgtcgagcagt
gatgattcagatgacgactcgagtggaaagagaagaaaatcgggttctggatcgtcctcc
gggtctgggtcgggttctgggagtggttccggttctgactcgtcagcacaggaacaggag
cacagtgaagagtcggatgattacgagcccagtcacaaagtcaaaagcaggaagcttcca
accaaggctaacgccagaaacgggaagaagagcaatgtgcagaggaaaaagccctctgcg
ggctcatcctcagacgacgactacgacggcaagaagtcgtcgtcgaaccaggggcccagg
cgccaggccacgcagaacgtcagctacaaggaggacgaggagcagaagactgactctgac
gacctggtggaggtgtgcggggaggatgtgcctccgccagacgaggatgagtttgagacc
ctggagcgagtgatggagacgcggatagggaggagaggagcgacgggaggcaccaccaca
gtgtacgcagtggaggcggacggagaccccaacgccaacttcaaccccaacaaggaggcg
ggcgagcagcagtacctgttcaagtggaaaggctggtcccatatccacaacacctgggag
acagaggagacgctgaagctacagaacgtcaagggcatgaagaaactagacaacttcaag
aagaaggaatcggacaagaagaaatggataaaatgttcttcaccagaggatgtggaatat
ttcaactgtcaacaggaactcatggacgacttacactcacaatatcagctggtggagagg
ataattgggcattcaaatcagaagtcggcggcgggttttccagactacctgtgcaagtgg
cagggcctgtcgtactccgagtgcagctgggaggacggagccctcatctccagaaagtac
cagaagagcatagatgactatatgcgcagaaaccagtccaagaccattccctccagagac
tgcaaggtgttgaaacagaggccgaggtttattcccatgaagaaacagccgtcctatatc
ggtggagaaggactgcagctccgagactaccagttggacagcttgaactggatggctcac
tcatggtgcaaggggaacagttgcatcctggcagatgagatgggcttgggaaaaaccatc
cagaccatctccttcctcaactaccagttccacgaacaccagctgtacggaccattcctg
ctggtggtgcccctgtccacgctcgtctcctggcagagagagatccaactgtgggccccc
ctcatgaacgtggtggtctacctgggtgacattagcagccggggcatgatcagaacacat
gaatggatgcatgttcagaacaagagactcaagtttaacatcctgctaacaacatatgaa
attctcctaaaagataagggattcctggggaacgtgccgtgggccttcatcggcgtggat
gaagcccaccggctgaagaacgacgactcgctcctttataagaccatgatggactttaag
tccaaccaccggctgctcatcaccggcacgccgctgcagaactcactcaaagagctctgg
tccctgctgcacttcatcatgcccgaaaagttccactcgtgggagatatttgaggaggaa
catgggaagggtagggactctggctacaccagtctacacaaggagctggagcccttcctg
ctgcgtagagtcaagaaggatgtggagaagtctcttcctgctaaagtggagcagatcctc
agagtggagatgagtgccattcagaagcagtactacaagtggatcttgacgaggaactac
aaggccctgagtaaaggtaccaagggtagcacgtctggcttccttaacatcatgatggag
ctgaagaagtgctgtaaccactgctatctcatcaagcccccagaggacagcgagttctac
aacaaacaggaggccttacagcacctaatccggagcagtgggaagctggtgctgctggac
aagctgctgctgcgtctgcgggagcgtggccaccgtgtgctcatcttctcccagatggtc
cggatgctggacatcctggccgagtacctgaagagccgccagttcctcttccagagattg
gacggttccatcaagggggagatgaggaaacaggcgctggaccatttcaacgccgagggc
tctgaggatttctgcttcttgttgtcaacacgggcgggtggtctgggcatcaacctggcg
tcggccgacacggtggtcatctttgattcggactggaacccacagaatgacctgcaggcc
caggccagagcccacaggattggccagaagagacaggtgaacatctaccgtctggtgacc
aagagctcggtggaggaggagatcattgagcgggccaagaagaagatggtgctggaccat
ctagtcatccagaggatggacaccacgggcaagacggtcctccacaccggcaccgccccg
tccagtgccactccgttcaacaaggaggagctgtcggccattttgaagtttggtgccgag
gagctgttcaaggagcaggaaggggaggagcaggagcctcaggatatggacatcgacgat
atcctgaagagagcggagaccagagagaatgaccccggcccctccactgttggagaggag
ctgctctcacagttcaaggtggccaacttctccatgatggaggaggaggagatcgtcatg
gattctgagcgccaccatcggggctgggacgacatcatccccgaggagcagcgtcggcgg
atggaggaggaggagaggcagaaagagctggaggagatctacctgctgccccgcatgagg
aactgtgccaaacaggtcaactttaacggcagtgagagccggcgtagtagaaacagacgg
tattccggctccgacagcgactccgtctcggatcgcaagaggcccaagaaacgaggacgg
cctcggaccattccacgagaaaacatcaagggcttcagcgatgctgagatacgaagattt
atcaagagctacaagaagtttggtggaccacttgaaagactggatgctatcgcccgtgat
gccgagctagtggacaagtctgaacatgacctgaagcgtctggccgagacggttcacaac
ggctgtctgaagactctcagggagaacccctgtggaccagagaagacgtcaggaggcaga
agagggaaagtgaaaggccctacgttcagaatctcgggagtccaggtgaacgccaagctg
gtgatctcccacgaggaggagctggcgccgctccacaaagccattcctgccgaccctgat
gagaggaagaggtacacaattccatgccactccaaggcagcacactttgacattgattgg
ggcaaggaggacgactctagcctgctcataggaatctacgagtacggttacggcagctgg
gaaatgattaagatggaccctgacctcaacctgacacacaagctcctaccagacgaccct
gacaagaagccacaggccaagcaactgcagacgagagcagactatcttatcaaattactg
agcaaggacctggccaagaaggaagcacagaggcaagcagggacggccaactggcggaag
aggaaaccgaggagtaagaagaccaaagctgtgaagccagccaaggtggacgaactggtg
aagagtccgtcctctacgccccactcagacaagtcctcagaggacgagattgaggaggaa
aaggaggtggtcccagtaaagctgccacccagaaggggccgagcggagcgcgtggtggtg
aaggaggagcctgagccagaggaggagccctcgccgcctgaggagaaggagcccaaagaa
agggagatgaagaaagaggttaaaaaggagaagaaagaagagagccgcgaggtgaaagag
aaggacctgaaagagaagaaagaaaccaagcccgtggatccagtacatgaacaggaagag
gtcacaggggagaagccgagcgaggtgaagactgaggtacgggagaaggtgaagaaaact
tcggacactccggtccacatcacagcagggggagagaacatctcggaggagtcggaggaa
ctggaccagaagactttcagtgtgtgtaaggagaggatgcgaccggtcaaggcggccctg
aagcagctggaccgtccggagaagggcctgtcggaacgcgagcagctggagcacacacgc
cagtgtctcatcaagatcggagaccacatcacagagtgtctgaaggagtactccaacccc
gagcagatcaaacagtggagaaaaaacctgtggatatttgtttcaaaatttacagaattt
gatgcaagaaaattgcataaactgtataagcacgcaatcaagaaaagacaagagaatgct
caggcagcagatgggatcactagcactgtaaatacccatggctttaaacatgcagacatc
gagaggctaaaggacaactctcaccacgacgacagcagcagggacagctacagctctgaa
agacaccactcgtcgtcgcgctaccatgaggaccgcgacagccgggacaggcacacctcc
gacccctacagcaggatggcggggagcgggggggactccaggaagagaccctactcgtcc
ttcagcaacggcaaagaccacagagaccactacaggtcagaccggcaggacagcagatac
tacagcgacagtaagcacaggaaggtggacgagcaccggtcaggccgagacggacggatg
gacagcaaggagcgctcccactctgaccaccgctcccattccgaacaccactcgggctcc
gactactcgtcgggccaccacaagtcgtcatcgcgaggtgactcctaccgctaccatgca
gactggcagatggaccaacgggcatcagccagcggtccccgttcgccgcgtgaccaacgc
tcaccacgcgaccagcgctcgccctacgacggacgctcgccgttaggccaccggtcgccc
ttcgagtactcgtcagaccacaagagcacgccagagcagatctggagcagccgcaagaca
taa
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integrated database retrieval system
