Salmo salar (Atlantic salmon): 106573747
Help
Entry
106573747 CDS
T04363
Symbol
edc4
Name
(RefSeq) enhancer of mRNA decapping 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106573747 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106573747 (edc4)
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106573747 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
106573747 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_EDC4L
WD40_Prp19
Beta-prop_TEP1_2nd
NBCH_WD40
WDR55
Pdc1_Ge1
Motif
Other DBs
NCBI-GeneID:
106573747
NCBI-ProteinID:
XP_014004556
UniProt:
A0A1S3MNZ3
LinkDB
All DBs
Position
ssa16:complement(30307336..30344295)
Genome browser
AA seq
1408 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGNNVDASPCENQRKTSFNGELNGLMPGAGNRSTMD
ESTGPNSENMNTQECQIICLSGDDGSTCIPITSNNVEIVASRDSSIDSKARGSNKVKIQP
VAKYDWEHKHYYGNLIAVSNSYLAYAIRGANNQAMIRVLSLGSAERTLLKGFTGAVTDLA
FAHLDSTLLGCVDEAGNLVIWQLTCHSSKIQDQVVVHIRRPEDTPLNSNRRLIWCPFILE
DNEENPEDASQTLALLHEDRAEVWDLEILRSNNSTWPVDATDLKDGVITIKGHTDRISEG
ALSPDGTVLATASHDGYVKFWQIYIEGQDQPSPLPGFFHRCLHEWQPHNGNPLSCLLFCD
NHKKQDPDVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNSSVLPSLKASLDL
SAECLILSDVQRKVLYVMELLQDQEKGHASFTAVSEFLLTHPVLSFGVQDVSRSRLRHTE
VLPQDEESESMTAEGNQGPMESRAGIQIKLYCVHTKSLQDVQIWFQPNLGSGSSLFLPHS
DSNDGFGFSDHLTDMSMEGLSSDKESGCGSQNDLRKIPTLPAPADFMSPTGATTMPKLMT
PDAFMTPSASVPASPGSSASSLKMVTAMTSNSDSGARGGEELTQNPKMSVESSSSLTLSA
STSSPRASSLLISGLGDNMPGLPSPNPPLSLDPQVIEPMLIQHASPTLARSPDVISSAST
AMSQDIPEIASETLQRSLGGVSGAESRDPLPALHTDSMASAASALHHLSPRNRNNSDHSH
LTLELGAGAVEAEQRLSNTPSLLENALSQENAAAAAAASCSDNTSHPWPAAPDITRETRN
SLRDNGLGDCSREEMKDRHMSSPYHRRTYHLTQNDSQDASAEQSDHDDEVASLASSSGNC
GARSSQRLPVKEWKSSPRGSPKLKRKSKKDDGDASHASQSRQPEHHNHQHQMNPEVQEEL
LMLLRNQQRELADLRQSQLELLQRVTGHMDAVQSSVIAHVEHVMVSQQEHEQRRMERILA
EGQNRNQQLQEHLSQQLAQTLNNTLCNRLDKTLREEMKKTVPPTIIKSLEPVTAQMNNTI
AAKLTAVEAALKENVSKVVKSKNTTDAIGRAAAEAMQGPIQAAYKDAFQSIVLPVFERGC
QSMFQQINDSFKQGTHEYIQQLETHMKSRKQREQEGQDPMIGQLQQMIDTFQNSTDQLAT
TVTASVRSEVQHQLNMTVGNLQESILTQVQRIVKGEVSMAMKEQQAAVTSSIMQAMRSAA
GTPVPTPHLDYQAQQANILQLLQQGQLNQAFQQALSASDLNLVLYVCETIDSQQVFGQHP
CPLIQPVLLSLIQQLSTNLATRSELKISYLEDAVMNLDHGDPVTRDHMSTVLSQVRQKLF
QFLQQDPHSPLSKRARRLVMMLQGLVNH
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaattcaaacatagatatagagggtgcaacccagcatcttcgtgacatatta
aagttggatagacccgggaacaacgtcgacgcatctccatgtgagaaccaaagaaaaaca
tctttcaatggcgaattgaatggacttatgccgggagctggcaacaggtcaaccatggat
gaatccacaggccctaattcagagaacatgaacacccaagagtgccagataatctgcctc
tctggggatgatggctccacttgcattcccatcacatccaacaatgttgaaattgtggcc
agtcgagactcaagcattgacagcaaggcccgtggcagcaacaaggtaaaaatccagcct
gtcgccaagtacgactgggagcacaagcattactacggcaacctgattgcagtttctaac
tcatacctggcgtatgcaatccgaggagcaaacaaccaggccatgatccgtgtgttgagc
ctgggctccgcggagcgcaccctgctgaagggcttcactggtgcagtcacagacctggcc
ttcgcccatctggattccaccctgctgggatgtgttgatgaagctggcaacctggtcatc
tggcagctcacctgccacagcagcaagatccaggatcaagtggttgtccacatccggagg
cctgaagacacacctctaaactccaataggaggttgatctggtgtcccttcatcctagag
gacaatgaagagaaccctgaggatgccagccagaccctggccctgctgcatgaagacagg
gctgaggtgtgggatctggagatcctccgcagcaacaatagcacctggccagtagatgcc
actgacctgaaggacggagttataaccataaaaggacatacagatcgtataagtgaaggt
gccctgtctccagatggcacagtcttggccacagccagtcatgatggttatgtaaagttc
tggcaaatctacattgaaggacaggaccagccaagtcctctccccggcttctttcacaga
tgtctgcatgagtggcagccccacaatgggaaccccctctcctgcctgctgttctgtgac
aaccacaagaaacaggacccagatgttccattctggcgctttctgattactggagctgat
cagaatcaggagctgaagatgtggtgcacagtgtcatggacctgcctgcagaccatcagg
ttttctccagacccgttcaactcctcagtcctgcccagtctaaaggccagcctggacctc
tctgcagaatgcctcatcctcagcgacgtacagagaaaggtgttgtatgtgatggagttg
ttgcaggaccaggagaagggccatgccagcttcacagccgtgtccgagttcctgcttaca
caccctgtactcagctttggtgttcaggacgtcagccgcagccgcctgcgccacacagag
gtcctcccccaagatgaggagagcgagagtatgactgcagagggcaaccagggcccaatg
gaatccagagctgggatccaaataaagctatactgtgtccacacaaagtcccttcaagat
gtgcagatctggttccagccaaaccttgggtctggctcgtccttatttctgcctcactca
gactcaaacgatggctttggtttttcggatcacttgacagacatgagcatggaaggtttg
agctctgacaaggagtccggatgtggctcccaaaatgatctccggaagattcccaccctt
cctgctcctgctgacttcatgtcccccactggcgccaccactatgcccaagctcatgacc
cctgacgccttcatgaccccaagtgcttcagtcccagcctccccaggcagcagtgccagc
agcctgaaaatggtgacagccatgaccagcaactctgacagtggcgctaggggaggagag
gagctcacccagaaccccaagatgtctgtggagagcagtagcagtctgactctcagtgcg
agcaccagcagccccagagccagctcccttctcatctcaggcctaggagacaacatgccg
gggcttccctctccaaacccgcccctctcgttggacccacaggtcattgagcctatgctg
attcagcatgcctctcccaccctggcccgctctccagacgtcatctcatctgcctccacg
gccatgtcccaggacatccctgagatcgcctctgagacgctgcagcgaagcctgggaggt
gtgtctggagctgaatcccgagaccctctcccagccctccacacagacagcatggcttct
gcagcctcagcccttcaccacctctctccacggaaccggaacaactctgaccacagccac
ctgaccctggagctgggtgctggagcagtggaggctgagcagaggctcagcaacactcct
tcactactggagaatgccctgtcacaggagaatgctgctgcagccgccgctgcctcctgc
tccgacaacacaagccacccctggcctgcagctcccgacatcacacgggaaacgcgcaac
agcctgcgggacaacggcctaggagactgctcaagggaggaaatgaaggaccgacacatg
tcctctccataccacagacgcacctaccacttaacccagaatgacagtcaggacgccagt
gcagaacagagtgaccatgatgacgaggtggccagtctagcgtcgtcctccgggaactgt
ggagccaggtcgtctcaaagactgccagtgaaggagtggaagagctctcccagaggctcc
cctaaactaaagaggaagagtaaaaaagatgacggggatgcgtctcatgcctctcagtcc
aggcagcctgagcatcataatcatcaacatcagatgaaccctgaggtgcaggaagagctg
ctgatgctgctgcgtaaccagcagagggagctagcggatctccgtcagagtcagctagaa
ctgctgcagagagtgacaggccacatggacgcagtgcagagctctgtcatagcccatgtg
gagcacgtcatggtcagccagcaggagcacgaacagaggagaatggagagaatcctagca
gagggacagaaccgtaaccagcaactccaggagcatctctcccagcagctggctcaaact
ctcaacaacaccctgtgtaaccgtctggacaagactctccgagaggagatgaagaaaact
gttcctcccaccattatcaagagtctggaacctgttactgcccagatgaataacaccatc
gctgctaagctgacggctgtggaggcagcactgaaggagaacgttagcaaagtcgtcaag
tcaaagaacaccacagatgcaattggccgggcagctgctgaggcaatgcaggggcctatc
caggctgcctacaaggatgcgttccagagcattgtgctgcctgtgtttgagaggggctgc
cagtctatgttccagcagatcaatgacagcttcaagcagggaacccatgagtatatccag
caactggagacccatatgaagagcaggaagcagcgtgagcaggagggccaggaccctatg
attggccagctgcagcagatgattgacacgttccagaattctacggatcagctggccacc
actgtcacagcaagtgtccgctcggaggtccagcaccagctcaacatgacggtgggaaac
ctgcaagaatcgatcctgacccaggtgcagcgcatagtgaagggtgaggtgagcatggcc
atgaaggagcagcaggcagctgtgacctccagcatcatgcaggccatgcgctctgctgca
ggcacgcccgtccctaccccacacctagactaccaggcccagcaggccaacatactgcag
ctgctgcagcagggacagctcaaccaggccttccaacaggccctgtcagcttctgaccta
aacctggttctgtatgtgtgcgagaccatcgactcccagcaggtgtttggccagcatccc
tgccccctgatccagccagtgctgctgtccctcatacagcagctatccactaacctggcc
acacgctctgagctcaagatcagttacttggaggatgctgtgatgaacctggaccatggt
gatccggtgacgagagaccacatgagtactgtgctctcccaggtccgacagaaactgttc
cagttcctgcagcaggacccacacagtcctcttagcaagagagcccggcgcctggtgatg
atgcttcaaggcctggtcaatcactag
DBGET
integrated database retrieval system
