Salmo salar (Atlantic salmon): 106573910
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Entry
106573910 CDS
T04363
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03013
Nucleocytoplasmic transport
sasa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106573910
03015 mRNA surveillance pathway
106573910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106573910
Enzymes [BR:
sasa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
106573910
5.6.2.5 RNA 5'-3' helicase
106573910
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
106573910
mRNA cycle factors
Common to processing body (P body) and stress granule
106573910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
NPHP3_N
ATPase
SLFN-g3_helicase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
UvrD_C_2
AAA_16
SRP54
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
106573910
NCBI-ProteinID:
XP_014004837
UniProt:
A0A1S3MNS3
LinkDB
All DBs
Position
ssa16:43367107..43387372
Genome browser
AA seq
1104 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDEGLHNGGVDDVAKASQLLAELNFEEDEEDTYYIKDLPLHACSYCGIHDPASVVYCNTS
KKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAK
ADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQ
QINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKL
KESQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGELAPLWKGIGH
VIKVPDTPFVKDYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDE
TSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPP
GTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLCAKSREAIDS
PVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVIC
CTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKK
AAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKG
FDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIIT
PYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLN
DPRRLNVALTRAKYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFS
KPRKLVNAINPGARFMSTAMYDAREALIPGSAYDRSSAGRPSNMYFQTHDQIGMIGAGPA
HMAAMNMPIPFNLVIPPMPPPGYLAQANGPAAGRGGVLKGKAGRGGRQRTRGMGNHSGSG
QSNGPNSQDVSSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVA
LSQDSTYQGERAYQHGGVTGLSQY
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagttctcaaacgctcaccttcctggacacggaggaa
gcggagctacttggggctgatacccagggctcggagtacgagtttaccgattttacactc
cccagccagacgcaaactcaaggccaaacccagagtcagctggacaatcaggtgaatggt
cctgatgaagggcttcacaatggaggagtcgatgatgtggccaaggcgagccaactcctt
gctgagttgaacttcgaggaggatgaagaagacacctattacatcaaagacctcccactg
catgcttgcagttactgtggcatccatgatcctgcatctgtggtgtactgcaacacaagc
aagaagtggttctgcaatggacgtggtaatacatctggcagtcacatagtgaaccacttg
gtgagagccaaatgcaaagaggtgactctgcacaaagatggaccactgggtgagacggtg
ctggagtgctacaactgtggctgtcgcaacgtcttcctcctgggcttcatccccgccaag
gccgactcggtggtggtgctgctgtgcaggcagccatgtgccagtcagagcagcctgaag
gacatcaactgggacagctcccagtggcagccgctgatccaggaccgctgcttcctgtcc
tggctggtgaagatcccctcggagcaggagcagctccgggcccgccagatcaccgcccag
cagatcaacaagctggaggagctctggaaggataatcccacagccactctggaggacctg
gagaagcccggcgtagacgaggagccccagcatgtgctgctgcgctacgaggatgcctac
cagtaccagaacatcttcggccccctcgtcaagctggaggctgactacgacaagaagctg
aaagagtcccagacccaagataatataacggtcaggtgggacctggggctaaataaaaag
cggattgcctatttctccttgcccaagacggattcaggtgacatgcggctgatgcaagga
gatgagatatgtctgcgctacaaaggagagctggccccactctggaagggcatcggccat
gtcatcaaagtcccagacacaccctttgtgaaagactatggagatgagattgctatagaa
ttgcgcagcagtgttggagctcctgtggaaataccccacaacttccaggtggattttgtg
tggaagtccacttcctttgacagaatgcagagtgccctgaagacctttgctgtggacgag
acatccgtgtcaggctacatctatcacaagctgctgggccacgaggtggaggatgtcatc
atcaagtgtcagttgcccaaacgcttcactgcacagggcctgcctgacctcaatcactct
caggtgtatgctgtgaagactgtgctgcagagacccctcagtcttatccaaggccccccc
ggcactgggaaaacggtcacctctgccaccatagtgtaccacctcgccaggcagggcaat
gggcccgtgctggtgtgtgctcccagtaacatcgcagtggaccagctgactgagaagatc
cacatgtcgggcctgaaggtggtcaggctgtgtgctaaaagcagagaagccatcgactcc
cctgtctccttcctggccctgcacaaccagatccgcaacatggacagtatgccagagctc
cagaagctgcagcagctgaaggatgagaccggggagctgtcgtccgctgatgagaagcgc
taccgggccctgaagcgcaccgctgagagagagctgctcatgaatgcagatgtgatctgc
tgtacctgtgtcggggcaggagacccccgcctggccaagatgcagttccgctccatccta
atcgatgagagcacccaggccaccgagccagagtgcatggtgcccgtggtcctgggtgcc
aagcagctcattctggtaggagaccactgccagctgggcccagtagtgatgtgtaagaag
gcagccaaggcgggcctgtcccagtctctgtttgagcgtctggtggtgctgggcatcagg
cccatccgtctgcaggtgcagtaccgcatgcacccggccctcagcgctttcccctccaac
atcttctacgagggctccctgcagaacggagtcaccgctgctgatcgcatcaagaaaggc
tttgacttccagtggccacagccagacaaacccatgttcttctatgtgactcaaggccag
gaggaaatcgctagctctggaacatcctacctgaacagaactgaggcagctaatgtggag
aagatcaccaccaggctgctgaaggctggagccaagcctgaccagataggcatcatcacc
ccctacgagggccagaggtcctacctggtgcagtacatgcagtttagcggctccctccac
accaagctctaccaggaggttgagatcgccagcgtggacgcgttccagggcagggagaaa
gacttcatcattctgtcatgcgtccgagccaacgagcatcagggcatcggcttcctcaac
gacccgcgccgtctcaacgtggccctcaccagagccaagtatggggtgatcattgtgggc
aaccccaaggccctgtccaagcagcctctgtggaaccacctgctcaactactacaaggag
cagaaggttctggtggagggacccctcaacaacctgcgagagagcctgatgcagttcagc
aagccccgcaagctggtcaacgccattaaccctggagcccggttcatgagcactgccatg
tatgacgcccgcgaggctctcattcctgggtctgcctacgatcgcagcagcgcagggcgt
ccatccaacatgtacttccaaacccacgaccagatcggcatgattggggccgggccagcc
cacatggcagccatgaacatgcctattccattcaacttggtgatacctcccatgcctccg
ccaggctacctggcccaggctaacggccctgctgcaggtcgtggtggggtgctgaagggc
aaagcggggcgtggcgggcgccagaggacccgcggcatggggaaccacagtggcagtggg
caaagcaatgggccaaacagccaggacgtgtcttcccagcccttctcccaggggccactc
acccagggctacatcaccatgagccagccctcacagatgagccaacctggcctctcccag
cctgaactgtcccaggacagttatctaggcgatgagttcaagtcccagatcgacgtggct
ctgtcgcaggactcgacttaccagggtgaacgtgcataccaacatggtggggtgactgga
ctgtcacagtactaa
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