Salmo salar (Atlantic salmon): 106574734
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Entry
106574734 CDS
T04363
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04140
Autophagy - animal
sasa04148
Efferocytosis
sasa05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
106574734
04148 Efferocytosis
106574734
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
106574734
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sasa04131
]
106574734
Membrane trafficking [BR:
sasa04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
106574734
Hops complex
106574734
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_C
Vps16_N
DUF740
Sipho_tail
Motif
Other DBs
NCBI-GeneID:
106574734
NCBI-ProteinID:
XP_014006228
UniProt:
A0A1S3MSL5
LinkDB
All DBs
Position
ssa16:76792046..76802492
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AA seq
768 aa
AA seq
DB search
PSLSPSLSFLQWKSGPVRQLGWTVCDDLLCIQEDGTVLIYDLFGAFKRHFSMGNEVVQTQ
VLEAKVFHSPYGTGVAIVTGASRFTLATNIDDLKLRRLPEVPGLQGAPSCWAVLTQDRQT
KVLLANGADLYILDNTSCTPVTPPGLSPQACSIVNMAVSFSYKYLTLFTDSGHLWMGSAN
LKDKLSEVDTKVRTPPKQMVWCRRPKSQQPSVVIMWDRLLLVAGECTDTIQYTLDEDCVC
VAELDGVRIVGGSRHELLQEVPSACQDIFKIASMAPGALLLEAHKEYEKSSQKADEYLRE
IKEQSVLGEAVRQCVEAAGYEHEPETQKTLLRAASFGKCFLSNYPPEPFVSMCRDLKVLN
SVRDYTVGIPLTHTQYKQMTVQVLIDRLVYRKLYPLAIEICRYLKTPEYQGVSRVLKHWA
CCKVQQKEEPDESIAHAVSVKLGEAAGISYSEIAARAYECGRTELAIKLLEFEPRSGEQV
PLLLKMRSQLALSKAIESGDTDLVYTVVTYLKNEMNRGDFFMTLRNQPVALSLYRQFCKH
QEQDTLKDLFNQDDDHQELGNFYVKASYKEKKLEARLSLLQSAVDEYNKAKNEFAAKATE
EEMKLLRFQRRLDEEKGEALLGLSLQETLHALLTSNFHKQAEQLYRDFRVPDKRYWWLKL
TALAEKDDWEEMEKFAKSKKSPIGYLPFVEVCVKQHNKYEAKKYVSKVTPEQKVKAHLAI
GDLEGAAEAAIERRSEGEISTVLSRCSPTTDRALLERLNRARSTAAKK
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
ccctccctttctccttccctctcgtttctccagtggaagagtggcccagtgagacagctg
ggttggacggtgtgtgatgacctgctgtgtatccaggaggatggcactgtcctcatctac
gacctgtttggtgccttcaaaagacacttcagcatgggcaacgaggtggttcaaacacag
gtgctggaagccaaggtgttccactctccctacggaaccggtgttgccatagtaacggga
gcctcacgcttcaccctggccacgaacattgacgacctgaagctgaggagactcccggaa
gtcccaggcctccagggggcaccctcctgctgggcagtgctgactcaggacagacagacc
aaagtgctgctggccaacggagctgacctctacatactggacaacacatcctgcacccct
gtgacccctccaggcctctctccccaggcctgtagcattgttaacatggctgtgtcattc
agctataagtacctgactctgttcacagactctggacacctgtggatgggctcagccaac
ctcaaggacaagctgagtgaggtggacaccaaggtgaggaccccccctaaacagatggtc
tggtgcagaaggccaaagagccagcagccctctgtggtcatcatgtgggacaggctccta
ctggtggccggagagtgtacagacaccatccaatacactctggatgaggattgtgtgtgt
gtagcagagctggatggagtaaggatcgtaggagggtccaggcatgagctgctgcaggag
gtgccctcggcctgccaggacatctttaaaatcgcctccatggctcctggagctttacta
ctggaggcacacaaggagtacgagaagtccagtcagaaggcagatgagtacctgagagag
ataaaggaacagagtgtattgggggaagcggtgagacagtgtgtggaggctgctgggtat
gaacatgaaccagagacccagaaaacactgctcagggctgcgtcctttgggaagtgtttt
ctcagtaactacccaccagagccgtttgtcagtatgtgtcgagacctgaaagttctcaac
tctgtccgagactacactgtggggatccccctcacacacacacagtacaaacagatgact
gttcaggtcctcattgacaggttggtgtaccgtaagctgtatcccctggccattgagatc
tgtcgctatctgaagacaccagagtaccagggagtcagcagagttctcaaacactgggcc
tgctgcaaggtccagcagaaagaagagcctgatgagtccatagcacatgctgtcagtgtg
aagctgggtgaggcagcaggaatctcctactctgagatcgctgccagagcatatgagtgt
ggcaggacggaactggccatcaagttgttggagtttgagcctcgttctggggagcaggtc
cccctgctactgaagatgaggagtcaactggccctgagtaaagctatagagagtggagat
acagacctggtttacacggtggtgacatacctgaagaacgagatgaacagaggagacttc
ttcatgacgctcagaaaccaaccggtagccctgagcctctaccggcagttctgtaagcac
caggaacaggacacactgaaggatctgttcaaccaagatgatgaccatcaggagctgggt
aacttctacgtcaaggccagttacaaggagaagaagctggaggctcgcctgtctctgctg
cagagtgctgtggacgagtacaacaaggccaagaacgagtttgcagccaaggcgacagag
gaggagatgaagctgctacggttccagaggcgtctggatgaggagaagggagaggctctg
ctgggcctgtctctccaggagactctgcatgccctcctcacctccaacttccacaagcag
gctgagcagctctacagggacttcagagtaccagacaaaaggtactggtggctgaagctg
acagctttggcagagaaggatgactgggaggagatggagaaatttgccaagagcaagaag
tcccccatcggctatctaccctttgtggaggtgtgtgtgaaacaacacaataagtacgag
gccaaaaagtatgtttccaaggtgaccccagagcaaaaggtcaaagcccacctggccatt
ggtgatctggagggggcagccgaggcagctatagagaggaggagtgaaggagagatcagc
acggtcctgtcccgctgttctcccaccacagaccgagccctgctggagagactcaaccga
gccagatccactgccgccaaaaagtga
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