Salmo salar (Atlantic salmon): 106575500
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Entry
106575500 CDS
T04363
Name
(RefSeq) ATP-dependent RNA helicase DDX3X-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
106575500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106575500
03041 Spliceosome [BR:
sasa03041
]
106575500
03036 Chromosome and associated proteins [BR:
sasa03036
]
106575500
Enzymes [BR:
sasa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106575500
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
106575500
mRNA cycle factors
Common to processing body (P body) and stress granule
106575500
Spliceosome [BR:
sasa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
106575500
Chromosome and associated proteins [BR:
sasa03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
106575500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
106575500
NCBI-ProteinID:
XP_014007489
UniProt:
A0A1S3MWD3
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All DBs
Position
ssa17:complement(17210883..17233001)
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AA seq
745 aa
AA seq
DB search
MSHVAVENLHGLEQQLAVLGLNNADGQGGGTGRTCYIPPHLRNQEASKIAADAFSRPSAL
SMAPGSYTPGGWDGGRNNGFVQNGYHDNRMNGGNRYNSGPPRMERGRGGGGFRGGRGGSY
NPVQPMQNAGMFGVYDNKDGGGWNTTKDAYTSFAARPDRGKSAFFNNGGSAPRGSYPRGG
FGGSGNSRWVEESRDDEDWSKPTQANERLEQELFAGGNTGINFDNYDDIPVEATGQNCPH
HIDSFQDVEMGEIIMSNIALTRYTRPTPVQKYAIPIIKNKRDLMACAQTGSGKTAAFLLP
VLSQIYTEGPGEALAAQKSGGQDNGKYGRRKQYPLALVLAPTRELALQIYEEARKFAYRS
RVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRML
DMGFEPQIRRIVEQDTMPPKGIRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSE
NITQKVVWVEDGDKRSFLLDLLNATVIPSEVQDNAGENIEKPGKNSLTLVFVETKKGADA
LEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPILVATAVAARGLDISNVKHVINF
DLPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNGNITKDLLDILVEAKQEVPSWLESLAY
EHQHKSNTRGRSKRFTSGGFGARDYRQTSGGGSTGGFGGRGGRQPGGHGGNRGFGGGGGF
GGNFYSSDGYGGNYSHQGGVDWWGN
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggccgtcgaaaatttacacggtctagaacagcagcttgctgtcctaggc
ttgaacaatgctgacgggcagggcggaggtactggcaggacctgttacattccacctcat
ttacggaaccaagaggcttccaaaattgcagcagatgctttctctagaccgagcgctttg
tcaatggcaccaggaagctatacgcctggcggttgggacggtggacgcaacaacggcttc
gtgcagaatggttaccacgacaaccgcatgaatgggggtaaccggtacaacagtggcccg
cctcgcatggagaggggcagggggggtggaggtttccgcggtggcaggggcgggtcctac
aacccggtacagcctatgcagaacgccggcatgtttggcgtctacgacaacaaagatggc
ggcgggtggaacacgactaaagatgcctacaccagcttcgccgcgcgtcccgacaggggg
aagtctgcttttttcaacaacggcgggagtgcgccccgaggaagttatccgcgtggaggg
tttggaggcagtggaaacagccgctgggtggaggagtccagggatgacgaggactggtcc
aaacccactcaggccaatgagcgcctggaacaggagctgttcgctggtggtaacacaggg
attaactttgacaattacgacgacattcccgttgaggccactggccaaaactgcccccat
cacattgacagcttccaagatgtagagatgggagagatcatcatgagcaacatcgccctg
acccgctacactcggcccactccggtccagaagtacgctattccaatcatcaagaacaag
agggacctgatggcctgcgcccagactggttccggtaagactgccgctttcctgttgcct
gtactgagtcagatctacactgaaggcccaggagaagccctcgctgcccagaagtctgga
ggacaggacaacggaaagtatggtcgccgtaagcagtaccccctcgctctggtcctggcc
cccaccagagaactggccctgcagatctacgaagaggccagaaagtttgcataccggtcc
cgtgtgcgtccttgtgtggtgtacggaggggctgacattggccagcagatcagagacctg
gagcgaggctgtcacctgctggtggctacacctggacgcctggtggacatgatggagagg
ggcaagatcggcctcgactactgcaattacctggtgctggatgaggctgaccggatgttg
gacatgggttttgagccccagatcagacgcatcgtggagcaggacaccatgccccctaaa
ggcatccgtcagaccatgatgttcagcgctaccttccccaaggagatccagatcctggcg
cgtgacttcctggaggagtacatcttcctggcggtgggacgcgtgggctccacctcagag
aacatcacccagaaggtggtgtgggtggaggacggtgacaagaggtccttcctcctggac
ctgctcaacgctacagtcattccgagcgaagttcaggacaatgcaggtgaaaacatagag
aaacctggtaagaattctctgacgctggtgtttgtggaaaccaagaagggagcggatgcc
ctggaggacttcctgtaccgcgagggttacgcttgcaccagtatccatggcgaccgctcc
cagagggaccgagaggaggctctgcaccagttccgctcgggacgctgccccatcctggtc
gccacggcggtggctgcccgtggcctggacatctccaatgtcaagcacgtcatcaacttt
gacctgcccagcgatatagaggagtacgtccaccgtattggccgtactggacgtgtgggc
aacctgggtctggccacgtcgttcttcaacgataagaacggcaacatcaccaaggacctt
ctggacatcctagtggaggccaaacaggaagtaccctcctggcttgagagcctggcctat
gaacaccagcacaagagcaacacccgcggacgctccaagaggttcacctctggtggcttc
ggagccagggactaccgtcagaccagtggcggcggcagcactggagggttcgggggtcgc
ggtggacgccagcccggtggacatggaggaaaccgtggatttggtggcggcggtggcttt
ggaggcaacttctacagcagtgatggctatggaggaaactactctcatcaggggggagtg
gactggtggggcaactaa
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