Salmo salar (Atlantic salmon): 106575954
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Entry
106575954 CDS
T04363
Name
(RefSeq) transcription intermediary factor 1-alpha-like
KO
K08881
tripartite motif-containing protein 24 [EC:
2.3.2.27
]
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
sasa01001
]
106575954
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sasa04121
]
106575954
Enzymes [BR:
sasa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
106575954
Protein kinases [BR:
sasa01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
106575954
Ubiquitin system [BR:
sasa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
106575954
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
zf-B_box
ANCHR-like_BBOX
PHD
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-RING_5
PHD-1st_NSD
Trypan_PARP
PML_CC
Trm112p
PRANC
DUF1351
ParB
DUF5054
Motif
Other DBs
NCBI-GeneID:
106575954
NCBI-ProteinID:
XP_014008200
UniProt:
A0A1S3MYP8
LinkDB
All DBs
Position
ssa17:complement(30582418..30594476)
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AA seq
1180 aa
AA seq
DB search
MDESPEAAVDNDDLVIIVENEAESLPAEEERAKQLGGSLGLMDTCPVCKLNFHNREPKLL
PCLHSFCNKCLPPPSRNLVNTEQRRDPQLQADNSKPRELLNVIRCPVCRQECWEVEVLDN
FFVKDSVEVPSSTVEKTSQVCMSCDDNTEATGFCVECVEFLCVTCIEAHQRVKFTRDHTI
RQKEEMSPEAVGASTQKPVFCDIHKQEPLKLFCETCDRLTCRDCQLLKHKDHNYQFLEDA
YRNHRQHLENMTHQLQEKRKAIEEVSNCINNGLQQVDENRKSVTNEIKKSICNLIMEINR
KGKILVNQLETLTKDHEVGLKKQQEDVSHLTRHLDHVINFTKWATASHSGTALLYCKRLI
LCQIHYLMRANCNASIVPQSSVRFQCRSGFWASNVDLGSLAVERIPGRQPSSMQQGFPPG
QPGPGPRGEGPPGAFPPGSSAHQRGSTLAQLQLQVEKLAQHPNRAGQPPPNHWSWYQQGL
KLPGPGPGGPPPQRPHQGGSPSQGPPNLVQIQQPGRSYGPPGPQTHPNPRSPTSMLQNTG
FPPQSLRDLIHNSSFPPKPMDVLQGTSRYSHAPPNTGPISTQASIHQRNMMEAAQLRRSD
PSGSSSLSIPNPRASYAPSLATAFPDRHAQGRQNSPMSKSEANIGSASWKRTEPHAAAPP
SAKRRRRSSPGPIIVIKDEPEDDDEVSFVQSSVGASASLPDSSTGIQPKPQQQSFPAPMV
ELQLEPEPQLEPEPQLEPEPQLEPEPQLEPQLEPEPQPEAQPQPEAQPQPEAQPQPEAQP
QPEAQLEPEAQPETQVELEADSQPDREKSPGLPEDDPNEDWCAVCQNGGELLCCDRCPKV
FHLNCHIPSLRESPSGEWFCSFCRDLASPEMEYNPDSQGESPAMKEEPGSERFPPVDKRK
CERLLLCIYCNEFSTDFQEPASPSSIPEYKELIETPMDLSIVKSRLESKESPCYCSAEEF
VKDVRLIFRNCAKYYQADTEVGAAGLSLEEYFEEQLKLLYQDRSFSGGREEGMIPPVEDE
MEEGMEDDGMAPNEGDMPPVEDDLTPVEEGMPSMEKEGTEEAPVEGGMEEEGIPPLEESM
EGEETSPVKGDSPPSDATELVDPSTRGASSPNLPSKDAPQPLSDTPDNPPSEEAPQPLSD
TPDNPPDTSPADSQDTSPAAGFTTENEGTTEEVRDEAEEE
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atggatgagagcccagaagctgctgtggataacgatgaccttgttattattgtggaaaac
gaggcagagagcttgccagctgaagaggagagggcgaaacaactaggaggtagcctcggt
ctcatggacacttgccctgtctgcaagttgaatttccacaacagagagccgaaacttctg
ccatgcctccactctttctgcaataagtgtcttccacctccttcaaggaacttagtcaac
actgaacaacggcgcgacccgcaacttcaagcggacaactcgaaaccacgtgagctcctc
aatgtgatccgctgcccagtgtgtcgacaagagtgctgggaggtggaggtgctcgataac
ttctttgtgaaggactctgtggaagttcccagcagcacagtggagaagaccagtcaggtg
tgtatgagttgtgatgacaacacagaggccacggggttctgtgtggagtgtgtggagttc
ctgtgtgtgacgtgtattgaggcccaccagcgagtcaaatttaccagggatcataccata
cggcagaaggaggagatgtccccagaggctgttggtgcatccacacagaagccagtgttt
tgtgacatccacaagcaggagcccctcaagctgttctgtgagacctgcgaccgtctcaca
tgcagagactgtcagctgctcaagcacaaagaccacaattaccagttccttgaagatgcc
tacagaaaccacaggcaacacctggaaaacatgacacatcagctacaggagaagaggaaa
gccatagaagaagtgtccaattgcatcaacaatggactccagcaagttgatgaaaaccgc
aagtctgtcaccaatgagataaagaagtcaatttgcaacttgatcatggagatcaacaga
aagggaaaaatcttggtcaatcaacttgagacactgacgaaggaccatgaggtcggactg
aagaaacaacaagaagatgtcagccacctcaccagacatctagatcacgtcatcaacttc
accaagtgggccacagccagtcacagtggcacagctctgctgtactgcaagagactgatt
ctttgccaaatccattacctaatgagggccaactgtaacgcatccatcgtccctcagagc
tcagtccgcttccagtgccgctccggtttctgggcctcaaatgtcgaccttgggtctttg
gcagtagagagaatccctggtcgtcagcccagttccatgcagcagggcttccctcctggc
cagcctggccccggccctagaggagagggccctcccggggccttccctccaggctcctcc
gcccatcagcgtgggagcaccctggcccagctccagctgcaggtagagaagcttgcccag
caccccaacagggctggacagccccctcccaaccattggtcctggtaccagcagggtctg
aaactaccggggccaggtccagggggcccacctccacagaggccccaccaggggggttct
ccatcacagggtccccccaacttggtccagatccagcagccaggccggagttatggaccc
cccgggccccaaacccatcccaaccccaggagccccacctctatgctgcaaaacacaggc
ttccctcctcagtctttaagggatctcatccacaactccagcttccctccaaaaccaatg
gatgtgctacagggtacctcccgctactctcatgcacctcctaacacaggacccatcagc
actcaagcctctatacaccagcgtaacatgatggaagccgcacaactgaggaggagtgac
cccagtggatcttcatcattatccatacccaaccccagagctagttatgctccgagccta
gccactgccttcccagaccgacatgcacaaggaagacagaattcccccatgtccaaatct
gaagccaacatagggtctgcttcctggaagcgcacagagcctcatgctgcggctcccccc
tcagctaagcggaggcgaaggtcgtcccccggaccaatcatcgtcatcaaggacgaacca
gaggacgatgacgaagtcagctttgtgcagtctagtgttggagcctcagccagcctgcca
gacagcagtacaggcatccagcccaagccccagcagcagtctttcccagcacccatggtg
gagctccagctagagccagagccccagctagagccagagccccagctagagccagagccc
cagctagagccagagccccagctagagccccagctagaaccagagccccagccagaggcc
cagccccagccagaggcccagccccagccagaggcccagccccagccagaggcccagccc
cagccagaggcccagctagagccagaggcccagccagagacccaggtagagctagaggca
gactcccaaccagaccgagaaaaatccccaggtctccctgaagacgacccgaatgaagac
tggtgcgccgtgtgtcagaatgggggagaactgctctgctgtgacagatgtcccaaagtc
ttccatctgaactgtcatataccttcacttagagagtctcccagtggtgagtggttctgt
tcgttctgtcgtgacctggccagtcctgagatggagtataacccagatagccagggagaa
tcaccagccatgaaggaagagccaggatcagagagattccctccagttgataaaaggaaa
tgtgagagactgttactctgcatctactgcaacgagttcagtacagatttccaggagcct
gcttcaccctcgtcaatcccagagtataaggagctgattgagactccaatggacctgtct
atagtgaagagcaggctggagtcgaaggagagcccatgttactgcagtgctgaggagttt
gtcaaggatgtcaggctcatattcaggaactgtgcaaagtattaccaggcagacactgag
gtgggagctgcaggactgagcctggaggagtactttgaagagcagctgaagctcctctac
caagacaggagcttctctgggggcagagaggagggcatgataccccctgtggaggatgag
atggaagaagggatggaagacgacgggatggctcctaacgaaggggatatgcccccggtc
gaggacgatctaacacctgttgaagaagggatgccttctatggagaaagaaggaacggaa
gaggctcctgtggaaggagggatggaggaagaagggatacctcctttagaagagagcatg
gaaggggaagagacttctccagtgaaaggagactcaccaccttctgatgctactgaacta
gtagatccatcaacaaggggtgcatcatcacccaaccttcccagcaaggatgctcctcaa
cccctctcagataccccagacaaccctccttccgaggaggccccccaacccctctcagat
accccagacaaccctcctgacaccagccctgctgactcccaggacaccagccctgctgca
ggcttcaccacagaaaatgaggggacgactgaagaagtgcgagacgaagcagaagaggaa
tga
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