Salmo salar (Atlantic salmon): 106576024
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Entry
106576024 CDS
T04363
Name
(RefSeq) regulator of nonsense transcripts 2-like
KO
K14327
regulator of nonsense transcripts 2
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03013
Nucleocytoplasmic transport
sasa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106576024
03015 mRNA surveillance pathway
106576024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106576024
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
106576024
mRNA cycle factors
P-body specific factors
106576024
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
106576024
NCBI-ProteinID:
XP_014008298
UniProt:
A0A1S3MYI1
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Position
ssa17:complement(34692170..34713565)
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AA seq
1366 aa
AA seq
DB search
MFMLTEIEVFCFSRMPAEGKRSLNMDEKEVSSFSNKEKDRDGDRRPASSRDKVKDEAKMS
GKKDIGKAAEEKRRRLEEDKRKKEEKERKRKEEEKQKAEEEQRKKEEEEKKQQEEQERKV
QEEEAKRQREEEAAQLKEKEEGHQLHQEAWERHQCRKELRVRNQNAHEGRPEETFFSRLD
SSLKKNTAFVKKLRTLTEQQRDALSNDFGSLNLSKYIGEAVGSVVEAKLKISDVGCAVHL
CSLFHQRYAEFAPLLLQAWKRHFEARKEEKAPNVSKLRTDLRFIAELTIVGLFTDKEGLS
LIYEQLKSIIGTDRETHTHVSVVISFCKHCGDDIAGLVPRKVKAAREKFGLAFPPSEIIN
TEKQQPFQNLLREYFTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQHEEFATS
YQKLLANTQSLADFLDENMPELPLDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDAR
NFYENMVDLKAFVPAILFKDNEKGKDKEEAAAKEAKDAAATTEELELELEALDIADDPLE
LDGPDEAENEAELAKKLLDEQGKDEGIKLGYERGQGNRARAHSWVLRANQLNREQEDEEA
STGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKSNRRKLVRALFTVPRQRLDL
LPFYSRLVATLHPCMSDVAEDLCSILKGDFRFHIRKKDQINIETKNKTVRFIGELAKFKL
FSKTDTLHCLKMLLSDFSHHHIEMACTLLETSGRFLFRSPDSHLRTSVLLEQMMRKKQAQ
HLDARYVTMVENAYYYCNPPPMEKTVRKKRPPLQEYIRKLLYKDLSKVTTEKVLRQMRKL
PWQDPESKGYLICCMVNIWNVKYNSIHCVANLLAGLVAYQEDVGIHVVDGVLEDIRLGME
VNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLFSFISFGVNPDGGPSPLDPPEHLFR
IRMVCTLLDTCGQYFDRGSSKRKLDCFLIYFQRYIWWKKSVEVWSAEHQFPIDIDYMISD
TLELLRPKMRLCISLEDSARQVTELEREFLVKLGLAMDGQKDGRPSSAMGSEGEALDEDD
DDDDEEGGADTEEQSGNESEMNEPEEEEGSENEEEEREEEEEENTDYLTDSNKENETDEE
NNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRSGEAVKVHQLDVAIPLQLKSQLK
KGPGGPVCSGEGDADISDTMQFVMLTRKGNKQQFKILNVPLSSHLAANHFNQQQAEQEER
MRMKKLTLDINERQEQEDYQEMMASLAQRPAPANTNRERRPRYQHPKGAPNADLIFKTGG
RKQETKQERNERHEKRDRQERQEKHKRNDRYEGQEARASQLSRTRY
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atgtttatgttgacagaaatcgaagttttttgtttttctagaatgcctgctgagggcaag
agatcattaaacatggatgagaaagaggtgagctcctttagtaacaaggagaaagacagg
gatggtgatagacggcccgcctcctcccgggataaagtgaaggatgaggcaaagatgagt
ggcaagaaagatattggtaaggctgcagaggaaaagcggaggcggcttgaggaagacaaa
agaaagaaggaagaaaaagagcggaaacggaaagaggaggagaaacagaaggcagaggag
gagcagaggaagaaggaggaagaagagaagaagcagcaggaggagcaggagaggaaagtt
caggaggaggaggccaagagacagcgtgaagaggaggcagctcaactcaaggagaaggag
gagggccaccagctccaccaggaggcctgggagcgccatcagtgccggaaggagcttcgc
gtccgcaaccagaacgcccatgagggccgtcccgaggagaccttctttagccgccttgac
tccagcttgaagaagaacacggcctttgtcaagaagctgcgcacgctcaccgagcagcag
cgcgatgccctctccaacgactttggctcactaaacctcagcaagtacatcggcgaggcg
gtgggctctgtggtggaggccaagctgaagatctctgacgtgggctgcgccgtgcacctg
tgctccctcttccaccagcgctacgccgaatttgccccactgctcctccaggcctggaaa
aggcactttgaggcacgcaaggaagagaaggcacccaacgtgagcaagctgcgcaccgac
ctgcgcttcatcgcagagctcaccatcgtaggcctgttcacggacaaggagggcctgtca
ctcatctacgagcagctgaagagcatcatcgggacagaccgcgagacacacacgcatgtg
tcagtggtcatcagcttctgtaagcactgcggggacgacatcgcgggcctggtgcctcgc
aaggtgaaggctgcacgggagaagtttggcctggccttccctcccagcgagatcatcaac
acagagaagcagcagccctttcagaaccttctgagggagtacttcacctcgctcaccaag
cacctgaagaaggaccaccgcgagctgcagaacattgagaggcagaacaggcgtatcctc
cactccaaaggggagctgagtgaggacagacacaagcagcatgaggagtttgccacgtcc
taccagaagctgctggctaacacccagtctctggccgactttctggatgagaacatgcca
gagcttccactggacaagactgtgcaggaagagcacggccctggcattgacatcttcacc
cctgggaagcccggagagtatgacctggaggggggcatctgggaggacgaggatgccagg
aacttctacgagaacatggtggacctgaaggccttcgtccccgccatcctgttcaaagat
aacgagaagggcaaggacaaagaggaggctgctgctaaagaggctaaagatgctgcggcc
accacagaggagttggagttggagctcgaggctctagacatcgctgatgaccctctggag
ctggatggacctgacgaggcagagaacgaggcagagctcgccaaaaagctgttggacgag
caaggtaaagatgaagggatcaagttagggtatgagagaggtcagggaaacagagctagg
gcccactcatgggtgctcagggccaatcaactaaacagagaacaagaggatgaggaggca
agcaccgggtcccatctgaagctcatcgtggacgccttcatccagcagcttcccaactgt
gtcaacagagacctcatagacaaggctgccatggatttctgcatgaacatgaacaccaag
tcaaacaggaggaagctggtccgggctctcttcaccgttcccagacaaaggttggatctg
ctgcccttttactcccgtctggtggccacccttcacccctgcatgtcagatgtggccgag
gacctgtgctccatactcaaaggagacttcaggttccacatccggaagaaggaccagatc
aacatcgaaacaaaaaataaaactgtaaggtttatcggggagctggccaagttcaagttg
ttctcaaaaacggacactctgcattgtctgaagatgctgctgtcagatttctcccatcac
cacatagagatggcctgcaccctgctggagaccagtggacgcttcctcttcagatccccc
gactcccacctccggaccagcgtccttctggagcaaatgatgcgtaagaagcaggcgcag
cacctggatgctcgctacgtgaccatggtggagaacgcctactactactgcaaccccccg
cccatggagaagactgtcaggaagaagaggcccccgctgcaggagtacatccgcaaactg
ctctacaaggacctctccaaggtcaccacggagaaggtgttgaggcagatgcgtaaactc
ccctggcaggacccagagtctaaaggctacctgatctgctgcatggtcaacatctggaac
gtcaagtacaacagcatccactgtgtggccaacctgctggccggccttgtggcctaccag
gaggacgtgggcatccacgtggtggacggggttctggaggacatccgcctgggaatggag
gtgaaccagcccaagttcaaccagcgtcgaatcagcagtgccaagttcctgggggagctc
tacaactaccgcatggtggagtcagcggtcatcttccgcaccctcttctccttcatctcg
ttcggggtgaacccggacggcggccccagccccctggacccccccgagcacctgttccgc
attcgcatggtctgcaccctgctggacacctgcggacagtactttgaccgcggctccagc
aagaggaagctggactgcttcctcatctacttccagaggtatatctggtggaagaagagt
gtggaggtgtggagtgcagagcaccagttccccatcgacattgactacatgatcagtgac
accctggagctgctccgaccaaagatgaggctctgcatctctctggaagactccgcacga
caggtcaccgagctggagagggagttcctcgttaaactgggactggccatggatgggcag
aaggacggccggccctccagtgccatggggagtgaaggcgaggctctagacgaggatgac
gatgatgacgacgaagagggaggggcggacacagaggagcagtctggcaatgagagcgag
atgaacgagccagaggaagaagaagggtctgagaatgaggaagaggagcgggaggaagaa
gaggaggagaacactgactatctgaccgactccaacaaagagaacgagacagacgaggag
aacaatgaggtaaccatccgtggtggcggtctgaagcatgtggcatgtgcggaggatgag
gacttcatccaggctctggacaagatgatgctggagaacctgcagcagcggagcggggag
gcggtgaaggtgcaccagctggacgtggccatccccctgcagctgaagagccagctgaag
aaaggccctggaggacccgtctgctctggagagggggacgcagacatctcagacaccatg
cagtttgtcatgctcacacgcaagggcaacaagcagcagtttaagatcctgaacgtgcct
ttatcctcccacctggctgccaaccacttcaaccagcagcaggcagagcaggaggagagg
atgaggatgaagaagctcactctggacatcaacgagagacaggagcaagaggactaccaa
gaaatgatggcgtctctggcccagcggcccgctcctgccaacaccaaccgggagcggcgc
ccgcgctaccaacaccccaaaggggcacccaacgccgacctcatcttcaagaccggagga
agaaagcaggaaacaaagcaggagagaaatgaaaggcacgaaaagcgtgacagacaagag
aggcaagagaaacacaagagaaacgacagatatgagggccaggaggctagggccagccag
ctcagccggacacgctactga
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