Salmo salar (Atlantic salmon): 106576868
Help
Entry
106576868 CDS
T04363
Symbol
ercc6
Name
(RefSeq) ERCC excision repair 6, chromatin remodeling factor
KO
K10841
DNA excision repair protein ERCC-6
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
106576868 (ercc6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sasa03036
]
106576868 (ercc6)
03400 DNA repair and recombination proteins [BR:
sasa03400
]
106576868 (ercc6)
Chromosome and associated proteins [BR:
sasa03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
106576868 (ercc6)
DNA repair and recombination proteins [BR:
sasa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
106576868 (ercc6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
WHD_Rad26_CSB
ResIII
Pneumovirus_M2
HDA2-3
Motif
Other DBs
NCBI-GeneID:
106576868
NCBI-ProteinID:
XP_014009846
UniProt:
A0A1S3N477
LinkDB
All DBs
Position
ssa18:3897731..3955294
Genome browser
AA seq
1488 aa
AA seq
DB search
MPVEDTEDQVPLSLFNPASAALTPGGMEEDGANRGTAGCSISITGTSQGDTEQPAMACPD
STGSGEGSSAIKKSGALLHIDRQRIQAVSASSGAAELQGLGVAVYDQDVLEQGVLQQVDQ
AIHEASQAAAKAEAEKEYQSVLDDVRSCMAALKHINKIIEQLTPYATSSKDINRQMESVR
RQKDNKEKQLKKIRAKQRRLQAILGGEDTQKIEAELLLEDDGDEEPGPSTLGSMLMPAQE
TEWEELIRMGHMTPFGTRVPQKEEKKEPRKFMLSENSGFDAYLADQAKMAVDRKRPAPLK
QKKKTAVGKEGKKTNGAALPSYSVDKKLQKRMRKLQRTALKAHPKAPAKGVTPIPKPRTK
LQAGGDEMDSEGSEYLPSDELMDPEREEGEDRDEGWGEEDEVDYYELKPYRKKSEEKGGK
KGKRRERDEEYYPDSSEEDEGSGKKGKEKLKKDDGDVEFFKQRIRRWRRLRLREREEKRE
RGEEESDQSDAEFDEGFKVPGFLWNKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTI
QVIAFLAGLSYSKLRTRGSNYRYQGLGPTVIVCPATVMHQWVSEFHTWWPPFRVAVLHDT
GSFTQTKEKLISEMAACHGVLITSYSAVRIMQESLQRYDGWHYVILDEGHKIRNPHAGVT
TACKQFRTPHRFILSGSPMQNNLKELWSLFDFVFPGKLGTLPIFMEQFSVPITMGGYSNA
SPVQVQTAYKCACVLRDTINPYLLRRMKADVKANLSLPDKNEQVLFCRLTEEQREVYQSY
LDSKEVYQILNGDMQVFSGLIALRKMCNHPDLFSGGPKILKGVPEDQLTEEEHFGFWKRS
GKLMVVESLLRLWFKQQHRVLLFTQSRQMLGILEVFVRENGYTYVKMDGTTTIASRQPLI
ARYNEDKSIFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKEVT
VYRLLTAGTIEEKIYHRQIFKHFLTNRILKDPKQRRFFKSNDIYELFTLSNPDGTQGTET
SAIFAGTGSDVQAPKKPVRPRSNHRHSVTNHNVSSTGGGAIPSPSPRPGDRTTLLCSNIS
LNKSNRLKDSQEANQGEADIPIGQSQTECDTQHSREEGSNAHILTDPERDRNSILPHKHR
DSPVTSPNPHKHSHTNAVSPSTQKHRDKHSPRKHRDSQGPGSSPYKHREKRKHCDSTVEG
PKNKHGKQAKVEGHRISYLVKKRSYKGQEEREGQPDKQDQRQSDDYVLAKLFKKSGIHSV
MQHDSIMEASNPDFVLVEAEANRVAKDALRALKVSRQHCRLPYNQPAPAPARKRFGQKKN
PLLSAPPATAVPAQEKCKDAAIIKKTIARKPIPGGHFSGEGVEVGGCSSTTAPLSSSTLL
ARMKARNYLSLPQGEGDEGGEEEGGARIPSGPPAPPTEHDELLVELRNFVAFQGAVDGQA
STKEVLDHFTPRLTQTQTPVFRELLRNICNFHRAKGQEGTWRLKPDYR
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
atgccagtagaagatactgaggaccaggttcctctttccctcttcaacccggcgagtgct
gctctcaccccgggaggaatggaggaggatggggcaaacagaggaactgctggatgctca
atctccatcactgggaccagccagggggacactgagcagcctgcaatggcctgcccagat
agcactggatctggggagggcagcagtgccattaagaagtctggagccctgctacacatt
gaccgtcagcgtatccaggctgtcagtgccagctccggggctgcagagctgcagggtctg
ggcgtcgccgtgtacgaccaggatgtattggagcagggggtcttgcagcaggtggaccag
gccatacacgaggccagccaggctgcagccaaggctgaggcagagaaggagtaccagtct
gtactagacgatgtcaggtcatgtatggcagctctgaagcacattaataagatcatagag
cagctgactccctacgctacttccagtaaagacattaacaggcagatggagtctgtcaga
cggcagaaagacaacaaggagaagcaattgaagaagatcagagcaaagcagaggagacta
caggccatcctggggggagaggacacacagaagatagaggctgagctactgctggaggac
gatggggacgaagagcccggcccatctactctgggcagtatgctgatgccggcacaggag
acggagtgggaggagctaatccggatgggtcacatgacaccgtttggaacgagggtccct
cagaaggaggagaagaaggaaccacgcaagttcatgctgtctgaaaactctggcttcgac
gcttacctggcggaccaagctaaaatggcggtggacaggaagagacctgcacccctaaag
cagaagaagaagactgctgtgggcaaggaagggaaaaagaccaacggagcggctctcccc
tcctactctgtggataagaagctccagaagcgaatgcgtaagctgcagaggaccgctctg
aaggcccaccctaaggccccggctaagggggtcacgccgatccccaagcccaggacgaag
cttcaagctgggggagatgagatggacagtgaggggtccgagtacctccccagtgatgaa
ctgatggaccccgagagagaagagggggaggaccgagatgagggctggggagaggaggat
gaggttgactactatgagttaaagccctacaggaagaagagtgaagaaaagggggggaag
aaggggaaaaggagagagcgtgacgaggagtattaccccgacagctcagaggaagacgag
ggttcagggaaaaagggaaaagagaagctgaagaaagacgacggagatgtggagttcttc
aaacagaggatacggaggtggaggcggctgcggctgagagagagggaggagaagagagag
agaggagaggaggagagtgaccagagtgatgctgagtttgatgaaggattcaaagtgcct
ggattcctctggaataaactcttcaagtaccagcagacaggtgtgaggtggctgtgggag
ctacactgccagcaggcaggggggatcctgggggatgagatgggtctgggtaaaaccatc
caagtcatagcattcctggctggcctcagctacagcaaactacgcacacgagggtccaac
tacaggtaccaaggactaggtcctacagtgatagtttgtccagctacagtcatgcaccag
tgggtcagtgagtttcacacctggtggcccccattcagagtggctgtcctacacgacacg
ggatccttcacccaaacaaaggagaagttaatatcagagatggcagcatgtcatggtgtc
ttgataacgtcgtattcagccgtgaggatcatgcaggagtccctgcagcgatacgacggc
tggcactacgttatactggacgagggacacaagatccgcaaccctcacgctggagttacc
actgcctgcaaacagttccgtactcctcataggttcattctatctggcagtcctatgcag
aacaatctgaaggagctgtggagtctatttgactttgtcttccctggcaaactgggcacg
ctgcctatttttatggaacagttctctgtacccatcaccatggggggatacagcaacgct
tcacctgtacaggtccagacagcgtataagtgtgcgtgtgttctgagggataccattaac
ccttacctgctcagacggatgaaggctgacgtgaaggccaacctctctttacctgacaag
aatgaacaggttttgttttgcaggctaacagaggagcagcgtgaggtgtatcagagctat
ctggactccaaagaggtctaccaaatactgaatggagatatgcaggtgttctcgggcctg
atagcactgcgtaagatgtgtaaccacccggacctgttctctgggggtcccaagatcctg
aagggtgtaccagaggaccaactgactgaagaggaacactttggcttctggaaacgttcc
ggcaaactgatggtggtggaatcactgctccgactttggtttaaacagcaacacagagtc
ctgctgttcacacagtccagacagatgttggggatattggaggtgtttgtgagggagaat
ggctacacctatgtgaaaatggatggtaccaccaccatcgcctccagacagcctctcatc
gctcgatacaacgaagacaagtctatctttgtgttcttgttgaccaccagagtggggggg
ctgggagtcaacctgaccggagctaacagagtcatcatctatgaccccgactggaaccct
agcactgacacacaggctcgagagcgagcttggaggatcggtcagaaaaaggaggtgact
gtctatagactactgaccgctgggaccattgaggagaagatctaccacaggcaaatcttc
aaacacttcctgaccaaccgcattctgaaggaccccaaacagcgacgcttcttcaagtcc
aacgacatctacgagttgtttaccttatctaaccctgacgggacgcagggcactgagacc
agcgctatatttgcaggtacgggttctgatgtccaagctcctaagaagccagtcagacca
aggtctaaccatagacactctgtaacaaatcacaatgttagctccactggaggtggagcc
atcccttccccatcgccccggcctggggacaggaccaccctcctttgcagtaacatctct
ctcaataagagcaacaggctgaaggacagccaggaagccaaccagggcgaggcagatatt
cctattggacagtcccagacagaatgtgacacacagcattctagggaggagggaagcaat
gctcatatactcacagacccagaaagagaccgaaactccattctgccccacaaacacaga
gactcacccgtgaccagcccaaacccccacaaacattcacacactaacgccgtcagtccc
agcacacagaaacaccgagacaaacacagtccacgcaagcacagagactctcaaggaccc
ggctccagtccctacaaacaccgggagaagaggaagcactgtgactcgacagtagaagga
cctaaaaacaaacacgggaaacaggccaaggttgagggtcatcgcatctcctacctggtg
aagaagaggagctacaaaggacaagaggagcgcgaggggcagccggataaacaggaccag
agacagagcgacgactatgtactggccaaactcttcaagaagtcgggtatacacagtgtg
atgcagcatgactccatcatggaggcatctaacccagactttgtcctggtggaagctgaa
gctaacagagtagctaaagacgctttgagagctctgaaggtctccagacaacactgtaga
ctgccctacaaccaacctgccccagctccagccaggaagaggtttggtcagaagaagaat
cctttgctgtctgctcctcctgctacagctgtcccagctcaggaaaaatgcaaggacgca
gccatcatcaagaaaaccatcgcaaggaaacccatcccagggggtcacttcagtggagaa
ggggtagaggtgggaggctgttcctctactacggcccccctctcttcctccactctactg
gcccgcatgaaagctaggaactacctcagcctgccccagggagaaggggatgaaggagga
gaggaagaggggggtgcccgtatcccctcaggccctcctgccccccctacggaacacgat
gagctcctggtggagctgagaaactttgtggcattccagggagctgtggatggacaggcc
agcaccaaggaggtcctggaccacttcacccccagactgacccagacccagacccctgtc
ttcagagaactactccgaaacatctgtaacttccacagggcaaaggggcaggaggggacg
tggagacttaaacctgactacagataa
DBGET
integrated database retrieval system
