Salmo salar (Atlantic salmon): 106576921
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Entry
106576921 CDS
T04363
Symbol
u2af2
Name
(RefSeq) U2 small nuclear RNA auxiliary factor 2
KO
K12837
splicing factor U2AF 65 kDa subunit
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106576921 (u2af2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sasa03041
]
106576921 (u2af2)
Spliceosome [BR:
sasa03041
]
Complex A
U2 snRNP components
U2 related factors
106576921 (u2af2)
Complex B
106576921 (u2af2)
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
AAA_8
Motif
Other DBs
NCBI-GeneID:
106576921
NCBI-ProteinID:
XP_014009926
UniProt:
A0A1S3N4F6
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Position
ssa02:11173749..11185086
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AA seq
501 aa
AA seq
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MSDFDEFERQLSENKQAQLVEHGACNARIVRSIPGNTPEKDKENRHHRRSPSRSRSRERK
RRSRDKDRRSRDRRGDSKERRPRRSSPSQQQPQEIAVSRSPHRETKKKNKVKKYWDVPPP
GFEHISVMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIP
FGITEESMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGI
IFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKE
LLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDVNLNDQITMENQAIAGLNGMQLGDKKLL
VQRASVGSKNATLTSINQTPVTLQVPGLMNSSMTQMAGLPTEVLCLMNMVAVEELVDEEE
YEEIVEDVRDECSKYGQVKSIEIPRPVDGLEVPGTGKIFVEFMSVFDSQKAMQGLTGRKF
ANRVVVTKYCDPDAYHRRDFW
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatttcgacgaattcgagagacagctgtctgaaaacaaacaagctcagttggta
gagcatggcgcttgcaacgccaggatagtgcgctcgattcccgggaacaccccggagaag
gacaaggagaaccgccaccaccgtcgctccccctctcgcagccgcagcagagagaggaag
aggaggagcagagacaaggacagacgcagcagggatcgccgtggagacagcaaggagcgc
agaccgagacgcagctcaccatcccaacaacaaccccaagagattgctgtaagtcgttcc
ccgcaccgtgaaacgaagaagaagaacaaagtgaagaagtactgggacgtccctcctcct
ggctttgaacacatcagtgtgatgcagtacaaagccatgcaggctgcgggtcagatccca
gccacggccctgctgcccaccatgaccccagatggcctggctgtgacccccactcctgtc
cctgtggtgggaagccagatgaccagacaggcccgtcggctttatgtggggaacatcccc
ttcggcatcacagaggagtccatgatggatttcttcaatgctcagatgcgtctgggcggt
ctcactcaggctccaggaaaccccgtcctcgctgttcagatcaaccaggacaagaacttt
gccttcctcgagttccgctcagtggatgagacaacccaggccatggcgttcgacggcatc
atcttccagggacagagtctgaagatccgccgtccccatgactaccagcctctgcccggc
atgagcgagaaccccagcgtctacgtgcctggcgtggtgtccacagtggtgcctgactcg
gcccacaagctgttcatcgggggcctgcccaactacctgaatgatgaccaggtgaaggag
ctcctgacatcgtttgggcctctcaaggcctttaacttggtcaaggatagtgccacaggt
ttgtctaagggttatgcgttctgtgagtatgtagatgtcaacctgaacgaccagatcacc
atggagaatcaggccatagcaggactcaacggcatgcagctgggagataaaaaactcctg
gtgcagagagccagcgtgggatccaagaacgccactctgacaagtataaaccagaccccg
gtgacgctgcaggtgccgggcctgatgaacagctcaatgacccagatggccggcctgccc
actgaggtgctgtgtctgatgaacatggtggctgtggaggagctggtggatgaagaggaa
tacgaggagatcgtggaggatgtgagggacgagtgcagcaagtacggccaggtcaagagc
atcgagatccccagacctgtggatgggctggaggtccctggcactggcaagatctttgtg
gagttcatgtcagtgtttgactcccagaaggccatgcagggtctgacgggcaggaagttt
gctaaccgggtggtggtgaccaaatactgcgaccctgatgcctaccaccgccgagacttc
tggtag
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