Salmo salar (Atlantic salmon): 106577020
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Entry
106577020 CDS
T04363
Name
(RefSeq) VPS10 domain-containing receptor SorCS3-like
KO
K27083
VPS10 domain-containing receptor SorCS3
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sasa04131
]
106577020
Membrane trafficking [BR:
sasa04131
]
Endocytosis
Others
Others
106577020
Endosome - Lysosome transport
106577020
Endosome - Golgi transport
106577020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
GBP_PSP
Motif
Other DBs
NCBI-GeneID:
106577020
NCBI-ProteinID:
XP_014010139
UniProt:
A0A1S3N3V4
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Position
ssa18:18907138..18967536
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AA seq
1247 aa
AA seq
DB search
MVVSGSVWCWALLTCILISFYNMLTAYAEISWPASSTTTNVWFNRKDKLPLELRANLKST
WVKVPKYIDKESTFSRAFRMETVDGKAAVPKGEEKLPKDLDGVIGKVPPDAVSTVRDKKA
PNRSKHFTADSKKSDSSVEGKDATIASSNRTRTKRSTSFGEYSDRSQIGGPGDAFSAEKL
VEPLQGVYSPRTEYRRTGEDARTSPRQSEPLLVTSTFPLSGDSAHNQAMGHWVGENSSVI
LTLTKQYDFNLGAFTESSLWRSVDYGSTYIKLNKKVGSTLACLYVCPTNKRKIMMLSDPE
LEQSVLISSDEGANFEKYPINFYMDGLLFHPTQENWLLASSPDNKVYSTMDFGRKWQLVS
ENVTPGRFFWAQTGLDREADVVHMETHIAKGRAQYVKCRAQRCTESNRQYLFPGFIDKNS
LVVQDNYVFVQVTKSGQASYFVSYMRESFKRIQLPKYCLPKDMHIISTNEKQVFSAVQEW
NQNDTYSLYISDSPGVYFTLSLENLRTRREPGGNLLVDLYKVEGINGIFLANKLVGHEVK
TFITYNKGQTWALLQAPNTDVAGNSLHCILPFCSLHLHLDTPVNPYLPGRIFSMDSAPGI
IVATGNIGTELSSTNLGMFITSDAGNSWRQIFEEELGVWFLDNGGALVAVSLIATVPIRH
VWVSLDEGKKWDRHSFSLAPLFLDGVLMQPENHIITFTGHLSRVSEWQLIKIDYKAIFSR
RCMDGDYQTWHLHNKGEPCVMGEKQTFMKRRPGNRCMLAQDYSRVISSEPCICRTYDFEC
DYGYERQADGKCTPAFWFNPSTVTRSCSTSHNYLNSTGYRKVLSNNCKEGGKDVYSPRKQ
HCSPRPPRGLRLTTSQGELTATVGSNVTFLVYLDDGNSLWTYIQLDFGDGITFMYNLSRR
GDGIKHSYREDGIFRVTAHAENSQGYDISSMFLHITSPVERVYLSAPIVAIRKKEANLTA
VVWPVHHRTLTFFWWFENSSEPLITLDGSISYTFWKEGMNRIMVQVSSGCNILQDTKIII
VKDFFKSLLLSFSPALDEHNPDIPEWREDVGRVVRTAVSQVSGFPEERLLVSLFPGVPTT
AELFILPETQLPEHGKQNKEDLVSISNLVINALNQGLVQFELKADTQIIVYITQLTLAPL
VYSNPIHSSSVMLMLLSVAFVGLAVFFIFKLKRKIPWIHVQAEENQEKEPEMIGTVGQNN
TMSKMKLSEFPTEKELMEKELKTRSRGEYRRNGERVITREFPTCTNV
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atggtcgtctcggggtcagtttggtgttgggctcttttgacttgcattttaatctctttt
tacaatatgttgacggcatacgctgaaataagttggccagcgagttccacgacgacaaac
gtttggtttaaccgtaaggataaattgcctttggagcttcgcgcaaacctaaaatccaca
tgggtcaaagtcccaaagtatatcgacaaggaatccacattttccagagcttttagaatg
gaaacagttgatggaaaagccgcagttccaaaaggtgaggagaaattgccaaaggacttg
gacggagttattgggaaagtgccaccagacgctgtatctactgtcagagataaaaaggcg
ccaaaccgttccaagcattttactgctgacagcaaaaagtctgacagttccgttgaaggt
aaagacgccacaattgcttcgagtaaccgtacgaggacaaagcgaagcacatcatttggc
gaatattcggacaggagtcaaattggaggtcctggtgacgcattttcagccgagaagctt
gtggagcctttacaaggcgtttacagtccgaggacagaataccgacgaactggggaggac
gcaagaactagcccgaggcaaagtgagccgcttctggttacctccactttccctctgtcc
ggagactctgcgcacaaccaggcaatggggcactgggttggagaaaacagcagcgtgatc
ctgaccttgacgaagcagtatgactttaacttgggtgctttcactgagagttctctgtgg
agatcagtggactatgggagcacttatataaaactgaataaaaaggttgggtcaaccttg
gcttgcctatacgtctgcccaaccaacaagagaaagataatgatgcttagcgacccagag
ctggagcaaagtgtactcatcagctcggatgaaggtgccaacttcgagaagtatcccatt
aacttctacatggacggtctgctgtttcatccaactcaggaaaactggctgctggctagc
agtcctgacaacaaggtgtacagcacaatggattttggaagaaaatggcagttggttagt
gagaatgtaactcctggccggttcttctgggcacaaactgggctagacagagaggcagat
gtggtccacatggagacccacatcgccaaaggacgtgctcagtatgttaagtgcagagct
caacgatgcacagaatcaaacagacaatacctgttcccgggattcatagacaaaaattct
ctggttgttcaggacaactatgtgtttgttcaggttaccaagtcagggcaggcgagttac
tttgtgtcctatatgagggaatcatttaaacgaattcagctacccaagtactgtcttcct
aaggacatgcacatcatcagtacaaatgagaagcaggtgttttctgctgtacaggagtgg
aaccagaatgacacctacagcctgtatatctcagactctccaggggtctatttcactctg
tctctagagaacctccggaccagaagagagccgggcggaaatttactggtcgacctgtat
aaggtagaaggaataaatggcatatttctagccaacaaattggtgggccatgaagtgaag
acattcatcacctataacaagggtcagacctgggccctgctgcaagcccccaacactgat
gtggctggaaacagtctgcactgcatcctgccattttgttctctgcatctgcacctggat
acgccagtgaatccttacctgcctggacgcatcttcagcatggactcagcacctgggatc
attgtagctacaggcaacattggtacagagctgtcctccactaaccttggaatgtttata
acatctgatgctggaaatagctggagacagatttttgaagaagaactcggtgtttggttt
cttgacaatggaggtgctttagttgcagtttctttaattgcaacagtacccatccggcac
gtatgggtaagtctggacgagggtaagaaatgggatcgccacagtttctctctggctcct
ttgtttctggatggagttctcatgcagccagagaatcacatcatcactttcactggacac
ttaagccgtgtttcagaatggcagctgataaagattgactacaaagccatctttagcagg
agatgcatggacggagattatcagacttggcacctacataacaagggagagccctgtgtg
atgggagagaagcagacctttatgaaacggaggccgggtaaccgctgtatgctggcccag
gactactcccgagtcatatcctcagaaccatgcatctgcaggacatatgattttgaatgt
gattatgggtatgaacgtcaagccgatggaaaatgtacccctgctttttggttcaaccca
agcacggtgacaagaagctgtagcactagccataactacctcaacagcacagggtacaga
aaggttttgtccaataattgcaaagagggagggaaggatgtgtactcccccaggaaacag
cattgttcccccaggcctcccagaggcctcagactgactaccagccagggagagctcacc
gccaccgtgggcagtaatgtcaccttcctggtgtatctggatgatggaaactcgttgtgg
acttatatccagctagactttggggacggcatcacgttcatgtacaacctgagccggaga
ggcgatggaatcaaacacagctatagagaagatgggatcttcagagtgacagcacatgca
gagaacagccagggttatgacatcagctccatgttcctacacatcactagcccagtggag
cgtgtgtatctctcagctcctattgttgccatcaggaagaaagaagctaacctaacggct
gtggtctggcctgtccaccacagaacactcaccttcttctggtggtttgaaaacagctcc
gagcccttaataaccttggatggaagcatctcgtacacgttttggaaggagggcatgaac
aggatcatggtccaagtgtcttctgggtgcaacatactgcaggataccaagatcatcatt
gtcaaagatttcttcaaatccctgctgttatcgttctctccggctttggacgagcacaac
cctgacatcccggagtggagagaggacgtgggccgcgtggtgaggacagctgtatcacag
gtttctggatttccagaggaacggctgttggtatcgttgtttccaggtgttccaacaaca
gcagaactatttatcctgcctgagacacagttgcctgaacatgggaagcagaacaaagag
gacttagtgagtatatcaaaccttgttataaatgccctgaaccaaggattggtccagttt
gagttgaaagctgacactcaaataattgtttacatcacacagctaactttggcacctctg
gtttactccaaccctattcacagtagctcagtcatgctgatgttgctatctgtggcgttt
gttggtttagctgtgttcttcatcttcaagttgaaaaggaaaatcccttggatccatgtc
caggctgaggagaaccaggaaaaggagccggagatgattggcacggtcgggcagaacaat
accatgtccaagatgaagctcagtgagttccccacagagaaggaactcatggagaaagaa
ttgaagaccaggagcagaggagaatatagaagaaatggggagagagtgatcacaagagaa
tttcctacttgtactaatgtctaa
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