Salmo salar (Atlantic salmon): 106577460
Help
Entry
106577460 CDS
T04363
Symbol
col25a1
Name
(RefSeq) collagen type XXV alpha 1 chain
KO
K24356
collagen type XXV alpha
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sasa00536
]
106577460 (col25a1)
Glycosaminoglycan binding proteins [BR:
sasa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106577460 (col25a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
106577460
NCBI-ProteinID:
XP_014010931
UniProt:
A0A1S3N788
LinkDB
All DBs
Position
ssa18:complement(40340154..40803920)
Genome browser
AA seq
721 aa
AA seq
DB search
MQIALSFAWSRNSYKGCRDQSARKKMERETTSLKQQYCCTAVMNVISSLFSVASLAFCIL
LSVQTSAITDRVLDLETGHGEQIFHRVPSFSVDQFNSLIQERVDELLSQRSYENLSKIRV
ARQVSHTPDCNCPPGPPGKRGRRGRNGEPGPPGPPGLQGDKGDQGDQGPRMVFPKINHGF
LSADQQLIKRRLIKGDQGSAGPPGPPGPPGPPGPRGPPGDTGKDGPRGVQGLPGDPGTPG
ELGLMGPEGPLGQKGPLGPPGIPGVDGLKGEMGERGEKGDMGEDGQKGEVGEKGDAGSSA
AGIKGEPGESGRGGSKGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGERGELGP
PGKGERGEPGQAGQKGGPGEAGNPGPRGSKGETGDKGDLGSMGPRGPPGQKGDQGATEII
DYNRNIQEALQKITTITVTGPPGPPGLSGPEGIKGDQGMPGLPGLDGERGFKGSKGDMGI
PGTSGDKGTVGLPGLPGVNGLKGDKGDSGLPGPEGPSIIGQPGAPGPHGPPGPMGPHGFP
GPKGEAGNHGLKGVRGESGHKGDRGPLGLPGASGLDSKPGIRGMDGPVGPSGPAGPKGDR
GERGAAGELGPRGPYGLPGAAGTPGLDGLPGLRGEKGDPGERGEKGEKGKKGKKGPKGEK
GEQGAPGLDAPCPLGFRGFKGEKGEPGQPGLDGLDAPCQLGPDGLPMPGCWQKGVTPWLV
A
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgcagattgcacttagttttgcatggtcaagaaatagttataaaggttgtagagaccaa
agtgcgcggaaaaaaatggagagagaaacgacatctttgaagcagcaatattgctgcaca
gctgttatgaacgttatctcgtctttattctctgtagcgtcccttgcgttttgcatatta
ttaagtgtacaaacatcagcgatcacggacagggtcctggatttggaaactggacatggc
gagcaaatctttcacagggtccccagcttttctgtggatcagtttaattcattgattcaa
gagagagtggatgagctcctgtcacagcgctcctatgaaaatttatcgaagatacgggtt
gcccgacaagttagccatactcctgattgcaactgtcccccaggcccgccaggaaagcgg
ggaagaagaggccggaatggcgaacctggacctcctggtcctcctggtctacagggtgac
aagggggatcaaggcgaccaaggaccgcggatggtcttccctaagatcaatcatggcttt
ctttctgctgaccagcagctcataaagcggcggcttattaagggagatcagggttcggca
ggtccaccagggcctcctggacccccaggtccccctggcccccgagggccaccaggggac
acaggcaaggatgggccccggggagtgcaaggtctgccgggagatcctgggaccccagga
gagctaggactaatgggacctgaggggccactaggacaaaagggtcccctcgggcctcct
ggcatcccaggtgttgatgggctgaagggtgaaatgggagagcgaggtgaaaagggtgac
atgggagaagatgggcaaaaaggtgaagtcggggagaagggtgatgcaggctcctctgct
gcaggcattaagggtgaaccaggagagtcaggacgtgggggatcaaagggagagccagga
cttccagggctgcctggacttcccgggattaagggtgagcctggattcctaggacctcag
ggagaaccggggctcccaggactaccaggaaccaagggcgagcgaggggaacttggccca
ccaggcaagggagagcggggcgagcctggacaggccggtcaaaagggagggccaggagag
gcagggaacccaggccctagaggttcaaagggagagacaggagacaagggagacctgggc
tctatgggaccaaggggaccccctgggcagaaaggtgaccaaggagccactgaaatcatt
gattacaacaggaacatccaagaagctttacagaagattaccactattacagtgacgggt
ccccctgggcctcctggattatcaggaccagagggaatcaagggagatcaaggcatgcct
ggcctccctggactggacggtgaaaggggtttcaaaggttccaaaggagacatgggaatc
cctggcacatctggagataaaggaactgttggcttacctggtttaccaggcgtcaatgga
ttgaaaggagataagggtgattctggtttgcctggtcctgaagggccctcaattattggc
caacctggagcacctgggccccatggccccccaggccccatgggaccccatggcttccct
ggaccaaagggggaggctgggaatcatggtctgaagggagtacgcggggagtcagggcac
aagggggacagaggacccctgggcctccccggagcctccggcttggacagcaagcctgga
attaggggtatggacgggcctgttggtccctccggtccagccgggccaaagggggacaga
ggtgagagaggagctgcaggtgaacttgggccaaggggaccttatggacttcctggagcg
gctggaacacctggccttgatgggttgccaggcttaaggggagagaaaggcgacccgggg
gaaagaggagaaaagggggagaagggaaagaagggaaaaaaagggcctaagggggagaaa
ggagaacagggtgcccctggattagatgcaccctgcccattgggattccggggctttaag
ggtgaaaagggagaaccggggcaacctggtctggatgggctggatgccccgtgccaattg
ggcccagacggactaccaatgcctggttgttggcaaaagggagtcacgccttggctggtg
gcttga
DBGET
integrated database retrieval system
